Wall clock time and date at job start Mon Mar 30 2020 03:21:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52999 * 109.47038 * 2 1
4 4 N 1.46898 * 109.46999 * 180.02562 * 3 2 1
5 5 C 1.48104 * 111.00397 * 65.96856 * 4 3 2
6 6 C 1.46135 * 112.19374 * 156.47861 * 5 4 3
7 7 C 1.54248 * 111.89946 * 60.86855 * 6 5 4
8 8 H 1.08997 * 109.60969 * 41.13245 * 7 6 5
9 9 C 1.53004 * 109.60774 * 161.64041 * 7 6 5
10 10 N 1.44253 * 108.64492 * 281.38471 * 7 6 5
11 11 C 1.48198 * 114.27632 * 93.39604 * 10 7 6
12 12 C 1.44185 * 111.07036 * 303.39786 * 4 3 2
13 13 H 1.08999 * 108.93536 * 96.38554 * 12 4 3
14 14 C 1.50696 * 108.75853 * 337.99318 * 12 4 3
15 15 H 1.08005 * 119.99749 * 351.15837 * 14 12 4
16 16 C 1.37871 * 120.00665 * 171.16120 * 14 12 4
17 17 N 1.31522 * 119.99749 * 359.97438 * 16 14 12
18 18 Si 1.86800 * 120.00326 * 180.02562 * 16 14 12
19 19 H 1.48497 * 109.47559 * 89.99890 * 18 16 14
20 20 H 1.48508 * 109.46842 * 209.99870 * 18 16 14
21 21 H 1.48499 * 109.47021 * 329.99431 * 18 16 14
22 22 H 1.08996 * 109.46993 * 179.97438 * 1 2 3
23 23 H 1.08995 * 109.46879 * 299.99692 * 1 2 3
24 24 H 1.08995 * 109.47047 * 59.99997 * 1 2 3
25 25 H 1.09004 * 109.46719 * 240.00222 * 2 1 3
26 26 H 1.08992 * 109.47642 * 120.00433 * 2 1 3
27 27 H 1.09004 * 109.47185 * 60.00507 * 3 2 1
28 28 H 1.09001 * 109.47717 * 300.00363 * 3 2 1
29 29 H 1.09000 * 108.93150 * 35.78029 * 5 4 3
30 30 H 1.08997 * 108.93600 * 277.18220 * 5 4 3
31 31 H 1.09002 * 108.99348 * 300.23947 * 6 5 4
32 32 H 1.09000 * 108.99395 * 181.48986 * 6 5 4
33 33 H 1.08999 * 109.47230 * 179.15564 * 9 7 6
34 34 H 1.09002 * 109.46527 * 299.15027 * 9 7 6
35 35 H 1.08996 * 109.47186 * 59.15261 * 9 7 6
36 36 H 1.00901 * 111.00319 * 326.93630 * 10 7 6
37 37 H 1.09001 * 108.82011 * 78.98570 * 11 10 7
38 38 H 1.08997 * 108.82335 * 197.39625 * 11 10 7
39 39 H 0.97001 * 119.99890 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5090 1.4425 -0.0006
5 6 4.0393 0.8796 -1.2637
6 6 5.3953 1.3441 -1.5486
7 6 6.3894 0.9291 -0.4447
8 1 6.1796 -0.0928 -0.1288
9 6 7.8196 1.0210 -0.9806
10 7 6.2340 1.8239 0.6760
11 6 5.2964 1.3399 1.7166
12 6 4.0278 0.7017 1.1223
13 1 4.2618 -0.3126 0.7992
14 6 2.9680 0.6372 2.1917
15 1 2.0665 1.2241 2.0946
16 6 3.1490 -0.1708 3.2940
17 7 4.2466 -0.8859 3.4121
18 14 1.8349 -0.2512 4.6192
19 1 0.8701 -1.3324 4.2947
20 1 2.4714 -0.5331 5.9310
21 1 1.1187 1.0480 4.6855
22 1 -0.3633 -1.0276 -0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5138 -0.8899
25 1 1.8933 -0.5138 -0.8901
26 1 1.8934 -0.5138 0.8898
27 1 1.6767 1.9563 0.8901
28 1 1.6767 1.9564 -0.8899
29 1 3.3849 1.1738 -2.0842
30 1 4.0458 -0.2079 -1.1911
31 1 5.3883 2.4311 -1.6296
32 1 5.7229 0.9212 -2.4984
33 1 8.5209 0.7418 -0.1944
34 1 7.9345 0.3441 -1.8272
35 1 8.0221 2.0426 -1.3022
36 1 5.9835 2.7510 0.3665
37 1 5.8067 0.5999 2.3331
38 1 5.0052 2.1807 2.3462
39 1 4.3738 -1.4547 4.1874
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000249984316.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:41
Heat of formation + Delta-G solvation = -7.730457 kcal
Electronic energy + Delta-G solvation = -17330.005450 eV
Core-core repulsion = 14885.819688 eV
Total energy + Delta-G solvation = -2444.185762 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.66941 -37.34445 -35.07247 -33.46129 -32.97595 -29.96147 -28.69650 -26.69931
-24.85569 -24.03490 -22.86020 -21.35493 -20.26217 -18.24835 -17.36409 -16.50097
-16.23735 -16.03486 -15.49084 -15.22011 -14.65845 -14.38554 -14.12246 -13.69457
-13.54134 -13.31881 -12.94194 -12.87562 -12.66941 -12.48742 -12.38492 -12.18951
-12.04620 -11.84242 -11.77717 -11.57167 -11.33434 -11.06041 -10.72143 -10.48208
-9.07196 -8.76374 -8.11921 -6.14035 1.38438 1.41320 1.49466 2.41332
3.18591 3.30012 3.75192 3.84050 4.22157 4.28429 4.39699 4.45603
4.53902 4.61680 4.68755 4.75214 4.86376 4.94393 4.96953 5.04156
5.05760 5.08747 5.11441 5.22480 5.26502 5.33132 5.42543 5.51810
5.57600 5.72417 5.78375 5.88543 6.02304 6.43501 6.52785 6.75076
6.94029 7.02895 7.48435 8.96282
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.024589 B = 0.011554 C = 0.008515
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1138.451030 B = 2422.915233 C = 3287.551240
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.163 4.163
3 C 0.077 3.923
4 N -0.534 5.534
5 C 0.055 3.945
6 C -0.132 4.132
7 C 0.093 3.907
8 H 0.031 0.969
9 C -0.125 4.125
10 N -0.695 5.695
11 C 0.103 3.897
12 C 0.202 3.798
13 H -0.033 1.033
14 C -0.521 4.521
15 H 0.080 0.920
16 C 0.014 3.986
17 N -0.921 5.921
18 Si 0.944 3.056
19 H -0.279 1.279
20 H -0.290 1.290
21 H -0.264 1.264
22 H 0.048 0.952
23 H 0.047 0.953
24 H 0.064 0.936
25 H 0.037 0.963
26 H 0.069 0.931
27 H 0.068 0.932
28 H 0.068 0.932
29 H 0.075 0.925
30 H 0.005 0.995
31 H 0.074 0.926
32 H 0.085 0.915
33 H 0.044 0.956
34 H 0.067 0.933
35 H 0.065 0.935
36 H 0.339 0.661
37 H 0.043 0.957
38 H 0.035 0.965
39 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.139 3.873 -9.326 10.162
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.202 4.202
3 C -0.050 4.050
4 N -0.257 5.257
5 C -0.073 4.073
6 C -0.171 4.171
7 C -0.018 4.018
8 H 0.050 0.950
9 C -0.183 4.183
10 N -0.325 5.325
11 C -0.027 4.027
12 C 0.092 3.908
13 H -0.015 1.015
14 C -0.560 4.560
15 H 0.097 0.903
16 C -0.185 4.185
17 N -0.560 5.560
18 Si 0.771 3.229
19 H -0.205 1.205
20 H -0.216 1.216
21 H -0.189 1.189
22 H 0.067 0.933
23 H 0.067 0.933
24 H 0.083 0.917
25 H 0.056 0.944
26 H 0.088 0.912
27 H 0.086 0.914
28 H 0.086 0.914
29 H 0.093 0.907
30 H 0.023 0.977
31 H 0.093 0.907
32 H 0.103 0.897
33 H 0.064 0.936
34 H 0.086 0.914
35 H 0.084 0.916
36 H 0.158 0.842
37 H 0.062 0.938
38 H 0.054 0.946
39 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -0.346 3.985 -8.845 9.707
hybrid contribution -1.610 -1.335 0.729 2.215
sum -1.957 2.650 -8.116 8.759
Atomic orbital electron populations
1.21598 0.94977 1.01176 1.01611 1.22362 0.96835 0.99310 1.01656
1.22053 0.87057 0.95273 1.00654 1.61854 1.07844 1.53845 1.02149
1.21090 0.97450 0.95840 0.92874 1.21255 0.94196 1.02117 0.99518
1.21178 0.95723 0.95141 0.89734 0.95028 1.21703 0.94271 1.02290
1.00051 1.59485 1.52518 1.05822 1.14659 1.22103 0.90812 0.97305
0.92494 1.19233 0.93599 0.89306 0.88666 1.01546 1.21970 1.04381
1.25023 1.04640 0.90263 1.25658 0.97151 0.95597 1.00070 1.70089
1.27280 1.28693 1.29975 0.85751 0.79624 0.78640 0.78913 1.20504
1.21569 1.18872 0.93275 0.93344 0.91660 0.94410 0.91232 0.91406
0.91363 0.90672 0.97696 0.90743 0.89678 0.93646 0.91382 0.91576
0.84243 0.93850 0.94611 0.93296
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.23 9.91 71.98 0.71 -3.52 16
2 C -0.16 -6.26 5.01 30.60 0.15 -6.11 16
3 C 0.08 2.92 4.74 86.30 0.41 3.33 16
4 N -0.53 -21.83 4.61 -889.74 -4.11 -25.93 16
5 C 0.06 1.95 4.12 83.96 0.35 2.29 16
6 C -0.13 -4.03 4.97 28.91 0.14 -3.88 16
7 C 0.09 3.32 2.72 45.83 0.12 3.45 16
8 H 0.03 1.37 6.96 -2.39 -0.02 1.35 16
9 C -0.13 -3.52 9.44 71.98 0.68 -2.84 16
10 N -0.70 -27.66 6.18 -490.24 -3.03 -30.69 16
11 C 0.10 5.00 5.78 86.37 0.50 5.50 16
12 C 0.20 9.89 0.97 44.99 0.04 9.93 16
13 H -0.03 -1.89 6.50 -2.39 -0.02 -1.91 16
14 C -0.52 -27.07 5.09 25.60 0.13 -26.94 16
15 H 0.08 4.00 4.69 -2.91 -0.01 3.99 16
16 C 0.01 0.78 5.33 84.65 0.45 1.23 16
17 N -0.92 -53.22 11.93 21.45 0.26 -52.97 16
18 Si 0.94 43.13 29.54 68.60 2.03 45.15 16
19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16
20 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16
21 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16
22 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16
23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16
24 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
25 H 0.04 1.42 7.10 -2.38 -0.02 1.40 16
26 H 0.07 3.32 5.23 -2.39 -0.01 3.30 16
27 H 0.07 2.77 5.81 -2.38 -0.01 2.76 16
28 H 0.07 2.20 7.91 -2.39 -0.02 2.18 16
29 H 0.07 2.30 7.71 -2.39 -0.02 2.28 16
30 H 0.00 0.19 6.91 -2.39 -0.02 0.17 16
31 H 0.07 2.15 7.62 -2.39 -0.02 2.13 16
32 H 0.08 2.14 8.00 -2.39 -0.02 2.13 16
33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16
34 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16
35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16
36 H 0.34 12.48 8.08 -89.69 -0.72 11.76 16
37 H 0.04 2.43 6.99 -2.39 -0.02 2.41 16
38 H 0.04 1.80 7.97 -2.39 -0.02 1.78 16
39 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16
Total: -1.00 -57.92 286.30 -0.86 -58.78
By element:
Atomic # 1 Polarization: 22.92 SS G_CDS: 0.29 Total: 23.21 kcal
Atomic # 6 Polarization: -21.25 SS G_CDS: 3.69 Total: -17.56 kcal
Atomic # 7 Polarization: -102.71 SS G_CDS: -6.88 Total: -109.59 kcal
Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal
Total: -57.92 -0.86 -58.78 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000249984316.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.050 kcal
(2) G-P(sol) polarization free energy of solvation -57.916 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.866 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.864 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.781 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.730 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds