Wall clock time and date at job start Mon Mar 30 2020 03:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47038 * 2 1 4 4 N 1.46898 * 109.46999 * 180.02562 * 3 2 1 5 5 C 1.48104 * 111.00397 * 65.96856 * 4 3 2 6 6 C 1.46135 * 112.19374 * 156.47861 * 5 4 3 7 7 C 1.54248 * 111.89946 * 60.86855 * 6 5 4 8 8 H 1.08997 * 109.60969 * 41.13245 * 7 6 5 9 9 C 1.53004 * 109.60774 * 161.64041 * 7 6 5 10 10 N 1.44253 * 108.64492 * 281.38471 * 7 6 5 11 11 C 1.48198 * 114.27632 * 93.39604 * 10 7 6 12 12 C 1.44185 * 111.07036 * 303.39786 * 4 3 2 13 13 H 1.08999 * 108.93536 * 96.38554 * 12 4 3 14 14 C 1.50696 * 108.75853 * 337.99318 * 12 4 3 15 15 H 1.08005 * 119.99749 * 351.15837 * 14 12 4 16 16 C 1.37871 * 120.00665 * 171.16120 * 14 12 4 17 17 N 1.31522 * 119.99749 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00326 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47559 * 89.99890 * 18 16 14 20 20 H 1.48508 * 109.46842 * 209.99870 * 18 16 14 21 21 H 1.48499 * 109.47021 * 329.99431 * 18 16 14 22 22 H 1.08996 * 109.46993 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46879 * 299.99692 * 1 2 3 24 24 H 1.08995 * 109.47047 * 59.99997 * 1 2 3 25 25 H 1.09004 * 109.46719 * 240.00222 * 2 1 3 26 26 H 1.08992 * 109.47642 * 120.00433 * 2 1 3 27 27 H 1.09004 * 109.47185 * 60.00507 * 3 2 1 28 28 H 1.09001 * 109.47717 * 300.00363 * 3 2 1 29 29 H 1.09000 * 108.93150 * 35.78029 * 5 4 3 30 30 H 1.08997 * 108.93600 * 277.18220 * 5 4 3 31 31 H 1.09002 * 108.99348 * 300.23947 * 6 5 4 32 32 H 1.09000 * 108.99395 * 181.48986 * 6 5 4 33 33 H 1.08999 * 109.47230 * 179.15564 * 9 7 6 34 34 H 1.09002 * 109.46527 * 299.15027 * 9 7 6 35 35 H 1.08996 * 109.47186 * 59.15261 * 9 7 6 36 36 H 1.00901 * 111.00319 * 326.93630 * 10 7 6 37 37 H 1.09001 * 108.82011 * 78.98570 * 11 10 7 38 38 H 1.08997 * 108.82335 * 197.39625 * 11 10 7 39 39 H 0.97001 * 119.99890 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0393 0.8796 -1.2637 6 6 5.3953 1.3441 -1.5486 7 6 6.3894 0.9291 -0.4447 8 1 6.1796 -0.0928 -0.1288 9 6 7.8196 1.0210 -0.9806 10 7 6.2340 1.8239 0.6760 11 6 5.2964 1.3399 1.7166 12 6 4.0278 0.7017 1.1223 13 1 4.2618 -0.3126 0.7992 14 6 2.9680 0.6372 2.1917 15 1 2.0665 1.2241 2.0946 16 6 3.1490 -0.1708 3.2940 17 7 4.2466 -0.8859 3.4121 18 14 1.8349 -0.2512 4.6192 19 1 0.8701 -1.3324 4.2947 20 1 2.4714 -0.5331 5.9310 21 1 1.1187 1.0480 4.6855 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8898 27 1 1.6767 1.9563 0.8901 28 1 1.6767 1.9564 -0.8899 29 1 3.3849 1.1738 -2.0842 30 1 4.0458 -0.2079 -1.1911 31 1 5.3883 2.4311 -1.6296 32 1 5.7229 0.9212 -2.4984 33 1 8.5209 0.7418 -0.1944 34 1 7.9345 0.3441 -1.8272 35 1 8.0221 2.0426 -1.3022 36 1 5.9835 2.7510 0.3665 37 1 5.8067 0.5999 2.3331 38 1 5.0052 2.1807 2.3462 39 1 4.3738 -1.4547 4.1874 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249984316.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:41 Heat of formation + Delta-G solvation = -7.730457 kcal Electronic energy + Delta-G solvation = -17330.005450 eV Core-core repulsion = 14885.819688 eV Total energy + Delta-G solvation = -2444.185762 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.66941 -37.34445 -35.07247 -33.46129 -32.97595 -29.96147 -28.69650 -26.69931 -24.85569 -24.03490 -22.86020 -21.35493 -20.26217 -18.24835 -17.36409 -16.50097 -16.23735 -16.03486 -15.49084 -15.22011 -14.65845 -14.38554 -14.12246 -13.69457 -13.54134 -13.31881 -12.94194 -12.87562 -12.66941 -12.48742 -12.38492 -12.18951 -12.04620 -11.84242 -11.77717 -11.57167 -11.33434 -11.06041 -10.72143 -10.48208 -9.07196 -8.76374 -8.11921 -6.14035 1.38438 1.41320 1.49466 2.41332 3.18591 3.30012 3.75192 3.84050 4.22157 4.28429 4.39699 4.45603 4.53902 4.61680 4.68755 4.75214 4.86376 4.94393 4.96953 5.04156 5.05760 5.08747 5.11441 5.22480 5.26502 5.33132 5.42543 5.51810 5.57600 5.72417 5.78375 5.88543 6.02304 6.43501 6.52785 6.75076 6.94029 7.02895 7.48435 8.96282 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024589 B = 0.011554 C = 0.008515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.451030 B = 2422.915233 C = 3287.551240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.163 4.163 3 C 0.077 3.923 4 N -0.534 5.534 5 C 0.055 3.945 6 C -0.132 4.132 7 C 0.093 3.907 8 H 0.031 0.969 9 C -0.125 4.125 10 N -0.695 5.695 11 C 0.103 3.897 12 C 0.202 3.798 13 H -0.033 1.033 14 C -0.521 4.521 15 H 0.080 0.920 16 C 0.014 3.986 17 N -0.921 5.921 18 Si 0.944 3.056 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.264 1.264 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.064 0.936 25 H 0.037 0.963 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.005 0.995 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.339 0.661 37 H 0.043 0.957 38 H 0.035 0.965 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.139 3.873 -9.326 10.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.202 4.202 3 C -0.050 4.050 4 N -0.257 5.257 5 C -0.073 4.073 6 C -0.171 4.171 7 C -0.018 4.018 8 H 0.050 0.950 9 C -0.183 4.183 10 N -0.325 5.325 11 C -0.027 4.027 12 C 0.092 3.908 13 H -0.015 1.015 14 C -0.560 4.560 15 H 0.097 0.903 16 C -0.185 4.185 17 N -0.560 5.560 18 Si 0.771 3.229 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.189 1.189 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.056 0.944 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.023 0.977 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.158 0.842 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.346 3.985 -8.845 9.707 hybrid contribution -1.610 -1.335 0.729 2.215 sum -1.957 2.650 -8.116 8.759 Atomic orbital electron populations 1.21598 0.94977 1.01176 1.01611 1.22362 0.96835 0.99310 1.01656 1.22053 0.87057 0.95273 1.00654 1.61854 1.07844 1.53845 1.02149 1.21090 0.97450 0.95840 0.92874 1.21255 0.94196 1.02117 0.99518 1.21178 0.95723 0.95141 0.89734 0.95028 1.21703 0.94271 1.02290 1.00051 1.59485 1.52518 1.05822 1.14659 1.22103 0.90812 0.97305 0.92494 1.19233 0.93599 0.89306 0.88666 1.01546 1.21970 1.04381 1.25023 1.04640 0.90263 1.25658 0.97151 0.95597 1.00070 1.70089 1.27280 1.28693 1.29975 0.85751 0.79624 0.78640 0.78913 1.20504 1.21569 1.18872 0.93275 0.93344 0.91660 0.94410 0.91232 0.91406 0.91363 0.90672 0.97696 0.90743 0.89678 0.93646 0.91382 0.91576 0.84243 0.93850 0.94611 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 9.91 71.98 0.71 -3.52 16 2 C -0.16 -6.26 5.01 30.60 0.15 -6.11 16 3 C 0.08 2.92 4.74 86.30 0.41 3.33 16 4 N -0.53 -21.83 4.61 -889.74 -4.11 -25.93 16 5 C 0.06 1.95 4.12 83.96 0.35 2.29 16 6 C -0.13 -4.03 4.97 28.91 0.14 -3.88 16 7 C 0.09 3.32 2.72 45.83 0.12 3.45 16 8 H 0.03 1.37 6.96 -2.39 -0.02 1.35 16 9 C -0.13 -3.52 9.44 71.98 0.68 -2.84 16 10 N -0.70 -27.66 6.18 -490.24 -3.03 -30.69 16 11 C 0.10 5.00 5.78 86.37 0.50 5.50 16 12 C 0.20 9.89 0.97 44.99 0.04 9.93 16 13 H -0.03 -1.89 6.50 -2.39 -0.02 -1.91 16 14 C -0.52 -27.07 5.09 25.60 0.13 -26.94 16 15 H 0.08 4.00 4.69 -2.91 -0.01 3.99 16 16 C 0.01 0.78 5.33 84.65 0.45 1.23 16 17 N -0.92 -53.22 11.93 21.45 0.26 -52.97 16 18 Si 0.94 43.13 29.54 68.60 2.03 45.15 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 22 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.04 1.42 7.10 -2.38 -0.02 1.40 16 26 H 0.07 3.32 5.23 -2.39 -0.01 3.30 16 27 H 0.07 2.77 5.81 -2.38 -0.01 2.76 16 28 H 0.07 2.20 7.91 -2.39 -0.02 2.18 16 29 H 0.07 2.30 7.71 -2.39 -0.02 2.28 16 30 H 0.00 0.19 6.91 -2.39 -0.02 0.17 16 31 H 0.07 2.15 7.62 -2.39 -0.02 2.13 16 32 H 0.08 2.14 8.00 -2.39 -0.02 2.13 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.34 12.48 8.08 -89.69 -0.72 11.76 16 37 H 0.04 2.43 6.99 -2.39 -0.02 2.41 16 38 H 0.04 1.80 7.97 -2.39 -0.02 1.78 16 39 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -57.92 286.30 -0.86 -58.78 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.29 Total: 23.21 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 3.69 Total: -17.56 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -6.88 Total: -109.59 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -57.92 -0.86 -58.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249984316.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.050 kcal (2) G-P(sol) polarization free energy of solvation -57.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds