Wall clock time and date at job start Mon Mar 30 2020 03:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47112 * 2 1 4 4 N 1.46905 * 109.47048 * 180.02562 * 3 2 1 5 5 C 1.47912 * 111.00000 * 291.71424 * 4 3 2 6 6 C 1.50802 * 108.49839 * 153.78881 * 5 4 3 7 7 H 1.09003 * 108.95332 * 331.87435 * 6 5 4 8 8 C 1.52994 * 108.95550 * 213.22150 * 6 5 4 9 9 C 1.53698 * 112.09794 * 92.54688 * 6 5 4 10 10 N 1.48064 * 112.47518 * 318.55141 * 9 6 5 11 11 C 1.44579 * 113.85164 * 318.32151 * 10 9 6 12 12 C 1.40011 * 111.00088 * 163.73956 * 4 3 2 13 13 H 1.09007 * 108.95605 * 67.42609 * 12 4 3 14 14 C 1.50700 * 108.96194 * 308.68429 * 12 4 3 15 15 H 1.08007 * 119.99444 * 354.29076 * 14 12 4 16 16 C 1.37873 * 120.00315 * 174.29892 * 14 12 4 17 17 N 1.31515 * 119.99937 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 120.00137 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47278 * 59.99844 * 18 16 14 20 20 H 1.48501 * 109.47154 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47291 * 299.99540 * 18 16 14 22 22 H 1.09000 * 109.47385 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46893 * 299.99920 * 1 2 3 24 24 H 1.09000 * 109.47267 * 59.99322 * 1 2 3 25 25 H 1.09006 * 109.46893 * 240.00080 * 2 1 3 26 26 H 1.09000 * 109.47267 * 120.00678 * 2 1 3 27 27 H 1.08996 * 109.47258 * 60.00280 * 3 2 1 28 28 H 1.09003 * 109.47440 * 299.99981 * 3 2 1 29 29 H 1.09000 * 109.62842 * 273.48624 * 5 4 3 30 30 H 1.08993 * 109.63188 * 34.08385 * 5 4 3 31 31 H 1.08995 * 109.47343 * 297.41710 * 8 6 5 32 32 H 1.09002 * 109.47178 * 57.41573 * 8 6 5 33 33 H 1.09002 * 109.47504 * 177.40999 * 8 6 5 34 34 H 1.09008 * 108.88106 * 197.78038 * 9 6 5 35 35 H 1.09000 * 108.88214 * 79.32900 * 9 6 5 36 36 H 1.00895 * 110.99863 * 84.43328 * 10 9 6 37 37 H 1.08999 * 109.57426 * 334.41275 * 11 10 9 38 38 H 1.09000 * 109.57165 * 214.03613 * 11 10 9 39 39 H 0.96998 * 120.00502 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0396 0.9314 1.2820 6 6 5.4088 0.3494 1.0354 7 1 5.4621 -0.0069 0.0066 8 6 5.6233 -0.8343 1.9807 9 6 6.5253 1.3805 1.2652 10 7 6.1831 2.7154 0.7236 11 6 5.5390 2.6739 -0.5700 12 6 4.0107 2.6973 -0.3666 13 1 3.7684 3.4173 0.4152 14 6 3.3540 3.1313 -1.6517 15 1 2.6945 2.4556 -2.1762 16 6 3.5951 4.3909 -2.1580 17 7 4.3979 5.2138 -1.5192 18 14 2.7817 4.9286 -3.7513 19 1 1.3058 4.8817 -3.5940 20 1 3.2004 6.3155 -4.0774 21 1 3.1918 4.0162 -4.8489 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5139 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 4.1129 1.7485 1.9996 30 1 3.3773 0.1576 1.6700 31 1 5.5947 -0.4850 3.0127 32 1 4.8354 -1.5713 1.8246 33 1 6.5924 -1.2902 1.7781 34 1 7.4366 1.0270 0.7827 35 1 6.7076 1.4703 2.3361 36 1 5.6334 3.2436 1.3845 37 1 5.8242 1.7599 -1.0909 38 1 5.8425 3.5407 -1.1570 39 1 4.5673 6.1000 -1.8752 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249991303.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:11 Heat of formation + Delta-G solvation = 1.660090 kcal Electronic energy + Delta-G solvation = -17075.367091 eV Core-core repulsion = 14631.588533 eV Total energy + Delta-G solvation = -2443.778558 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.98267 -35.33868 -33.85641 -32.20543 -31.80005 -27.70729 -26.38131 -25.22904 -23.92551 -22.77971 -20.47984 -19.70305 -18.97954 -16.62477 -15.46747 -15.07572 -14.52217 -14.37349 -14.17435 -13.96407 -12.99517 -12.90619 -12.61652 -12.27295 -12.02223 -11.87070 -11.41216 -11.31021 -11.09881 -11.04160 -10.92717 -10.72522 -10.61201 -10.23398 -10.09239 -9.83593 -9.73311 -9.68677 -9.07621 -8.39635 -7.25823 -7.05769 -6.01267 -4.05944 3.31298 3.36570 3.38775 4.39829 4.86827 5.20316 5.30347 5.32696 5.40801 5.49076 5.59656 5.69233 5.81632 5.88763 6.02943 6.07547 6.09278 6.15197 6.20906 6.29013 6.32614 6.48573 6.49047 6.59938 6.66763 6.77739 6.84613 6.94866 7.14961 7.33735 7.66131 7.83361 8.08888 8.22035 8.38493 8.47938 8.78167 9.04891 9.58908 11.04774 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020837 B = 0.011347 C = 0.007761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.441115 B = 2467.039412 C = 3606.942802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.063 3.937 4 N -0.541 5.541 5 C 0.065 3.935 6 C -0.122 4.122 7 H 0.080 0.920 8 C -0.139 4.139 9 C 0.069 3.931 10 N -0.700 5.700 11 C 0.080 3.920 12 C 0.196 3.804 13 H -0.011 1.011 14 C -0.511 4.511 15 H 0.064 0.936 16 C 0.061 3.939 17 N -0.884 5.884 18 Si 0.893 3.107 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.277 1.277 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.013 0.987 28 H 0.097 0.903 29 H 0.022 0.978 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.333 0.667 37 H 0.043 0.957 38 H 0.101 0.899 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.528 -8.734 5.209 10.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.065 4.065 4 N -0.264 5.264 5 C -0.063 4.063 6 C -0.143 4.143 7 H 0.098 0.902 8 C -0.198 4.198 9 C -0.061 4.061 10 N -0.329 5.329 11 C -0.049 4.049 12 C 0.086 3.914 13 H 0.006 0.994 14 C -0.550 4.550 15 H 0.082 0.918 16 C -0.141 4.141 17 N -0.522 5.522 18 Si 0.721 3.279 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.202 1.202 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.031 0.969 28 H 0.115 0.885 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.150 0.850 37 H 0.061 0.939 38 H 0.119 0.881 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.656 -8.724 4.562 9.867 hybrid contribution -1.532 0.613 0.038 1.651 sum -2.188 -8.111 4.600 9.578 Atomic orbital electron populations 1.21725 0.96645 1.00648 1.01606 1.21594 0.94415 0.98302 1.01498 1.22108 0.88077 0.94721 1.01567 1.59272 1.06509 1.32141 1.28527 1.21856 0.95193 0.98023 0.91249 1.21616 0.95692 0.96216 1.00787 0.90182 1.21826 1.00987 0.97898 0.99080 1.22356 0.96539 0.88967 0.98275 1.59840 1.52851 1.13970 1.06246 1.22015 0.92813 1.01508 0.88609 1.18753 0.93454 0.83543 0.95625 0.99367 1.21166 1.27800 0.98720 1.07272 0.91819 1.24966 0.95261 0.96620 0.97268 1.69932 1.35763 1.07605 1.38924 0.86641 0.79663 0.77623 0.83963 1.20435 1.21342 1.20207 0.93434 0.93316 0.92700 0.91748 0.93165 0.96858 0.88510 0.95988 0.91814 0.93348 0.93120 0.93104 0.92433 0.92989 0.84965 0.93869 0.88116 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.12 -1.93 5.95 -26.73 -0.16 -2.09 16 3 C 0.06 1.24 4.66 -3.82 -0.02 1.23 16 4 N -0.54 -11.50 3.88 -232.88 -0.90 -12.40 16 5 C 0.06 1.18 4.66 -4.37 -0.02 1.16 16 6 C -0.12 -2.05 2.25 -91.36 -0.21 -2.25 16 7 H 0.08 1.51 7.23 -51.93 -0.38 1.13 16 8 C -0.14 -1.84 8.85 37.15 0.33 -1.51 16 9 C 0.07 1.19 5.87 -2.82 -0.02 1.18 16 10 N -0.70 -14.73 6.53 -113.49 -0.74 -15.47 16 11 C 0.08 1.91 5.49 -4.44 -0.02 1.89 16 12 C 0.20 4.82 1.40 -71.80 -0.10 4.72 16 13 H -0.01 -0.30 7.57 -51.93 -0.39 -0.70 16 14 C -0.51 -13.63 7.34 -34.44 -0.25 -13.89 16 15 H 0.06 1.70 6.34 -52.48 -0.33 1.37 16 16 C 0.06 1.66 5.17 -17.82 -0.09 1.57 16 17 N -0.88 -24.87 11.62 55.43 0.64 -24.22 16 18 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.05 0.77 6.36 -51.93 -0.33 0.44 16 27 H 0.01 0.27 8.10 -51.93 -0.42 -0.15 16 28 H 0.10 2.13 5.42 -51.93 -0.28 1.85 16 29 H 0.02 0.42 7.13 -51.93 -0.37 0.05 16 30 H 0.06 1.06 5.53 -51.93 -0.29 0.77 16 31 H 0.05 0.59 8.11 -51.93 -0.42 0.17 16 32 H 0.05 0.64 8.02 -51.93 -0.42 0.22 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.98 8.14 -51.92 -0.42 0.55 16 35 H 0.05 0.81 7.95 -51.93 -0.41 0.40 16 36 H 0.33 7.16 7.50 -39.29 -0.29 6.87 16 37 H 0.04 1.04 6.93 -51.93 -0.36 0.68 16 38 H 0.10 2.76 6.10 -51.93 -0.32 2.44 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 289.90 15.07 4.37 4.37 Total: -1.00 -27.01 289.90 -8.53 -35.54 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.68 Total: 5.82 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -0.19 Total: -9.67 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -1.00 Total: -52.10 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.01 -8.53 -35.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249991303.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.202 kcal (2) G-P(sol) polarization free energy of solvation -27.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds