Wall clock time and date at job start Mon Mar 30 2020 03:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47112 * 2 1 4 4 N 1.46905 * 109.47048 * 180.02562 * 3 2 1 5 5 C 1.47912 * 111.00000 * 291.71424 * 4 3 2 6 6 C 1.50802 * 108.49839 * 153.78881 * 5 4 3 7 7 H 1.09003 * 108.95332 * 331.87435 * 6 5 4 8 8 C 1.52994 * 108.95550 * 213.22150 * 6 5 4 9 9 C 1.53698 * 112.09794 * 92.54688 * 6 5 4 10 10 N 1.48064 * 112.47518 * 318.55141 * 9 6 5 11 11 C 1.44579 * 113.85164 * 318.32151 * 10 9 6 12 12 C 1.40011 * 111.00088 * 163.73956 * 4 3 2 13 13 H 1.09007 * 108.95605 * 67.42609 * 12 4 3 14 14 C 1.50700 * 108.96194 * 308.68429 * 12 4 3 15 15 H 1.08007 * 119.99444 * 354.29076 * 14 12 4 16 16 C 1.37873 * 120.00315 * 174.29892 * 14 12 4 17 17 N 1.31515 * 119.99937 * 359.97438 * 16 14 12 18 18 Si 1.86793 * 120.00137 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47278 * 59.99844 * 18 16 14 20 20 H 1.48501 * 109.47154 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47291 * 299.99540 * 18 16 14 22 22 H 1.09000 * 109.47385 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46893 * 299.99920 * 1 2 3 24 24 H 1.09000 * 109.47267 * 59.99322 * 1 2 3 25 25 H 1.09006 * 109.46893 * 240.00080 * 2 1 3 26 26 H 1.09000 * 109.47267 * 120.00678 * 2 1 3 27 27 H 1.08996 * 109.47258 * 60.00280 * 3 2 1 28 28 H 1.09003 * 109.47440 * 299.99981 * 3 2 1 29 29 H 1.09000 * 109.62842 * 273.48624 * 5 4 3 30 30 H 1.08993 * 109.63188 * 34.08385 * 5 4 3 31 31 H 1.08995 * 109.47343 * 297.41710 * 8 6 5 32 32 H 1.09002 * 109.47178 * 57.41573 * 8 6 5 33 33 H 1.09002 * 109.47504 * 177.40999 * 8 6 5 34 34 H 1.09008 * 108.88106 * 197.78038 * 9 6 5 35 35 H 1.09000 * 108.88214 * 79.32900 * 9 6 5 36 36 H 1.00895 * 110.99863 * 84.43328 * 10 9 6 37 37 H 1.08999 * 109.57426 * 334.41275 * 11 10 9 38 38 H 1.09000 * 109.57165 * 214.03613 * 11 10 9 39 39 H 0.96998 * 120.00502 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0396 0.9314 1.2820 6 6 5.4088 0.3494 1.0354 7 1 5.4621 -0.0069 0.0066 8 6 5.6233 -0.8343 1.9807 9 6 6.5253 1.3805 1.2652 10 7 6.1831 2.7154 0.7236 11 6 5.5390 2.6739 -0.5700 12 6 4.0107 2.6973 -0.3666 13 1 3.7684 3.4173 0.4152 14 6 3.3540 3.1313 -1.6517 15 1 2.6945 2.4556 -2.1762 16 6 3.5951 4.3909 -2.1580 17 7 4.3979 5.2138 -1.5192 18 14 2.7817 4.9286 -3.7513 19 1 1.3058 4.8817 -3.5940 20 1 3.2004 6.3155 -4.0774 21 1 3.1918 4.0162 -4.8489 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5139 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 4.1129 1.7485 1.9996 30 1 3.3773 0.1576 1.6700 31 1 5.5947 -0.4850 3.0127 32 1 4.8354 -1.5713 1.8246 33 1 6.5924 -1.2902 1.7781 34 1 7.4366 1.0270 0.7827 35 1 6.7076 1.4703 2.3361 36 1 5.6334 3.2436 1.3845 37 1 5.8242 1.7599 -1.0909 38 1 5.8425 3.5407 -1.1570 39 1 4.5673 6.1000 -1.8752 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249991303.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:10 Heat of formation + Delta-G solvation = -16.516678 kcal Electronic energy + Delta-G solvation = -17076.155294 eV Core-core repulsion = 14631.588533 eV Total energy + Delta-G solvation = -2444.566762 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.64589 -36.86216 -35.60616 -33.77135 -33.50297 -29.41877 -27.94236 -26.72510 -25.62334 -24.35511 -21.96002 -21.50359 -20.44638 -18.62517 -17.22158 -16.60811 -16.27697 -16.03299 -15.82317 -15.38985 -14.57004 -14.31116 -14.13989 -13.96314 -13.53646 -13.16605 -12.92735 -12.88263 -12.66940 -12.59545 -12.44014 -12.34759 -12.17761 -11.89309 -11.78579 -11.53785 -11.25918 -11.24034 -10.93354 -10.46188 -8.99766 -8.83455 -8.09974 -6.21030 1.41327 1.42748 1.50153 2.41625 3.15634 3.31897 3.64661 3.95633 4.07890 4.15174 4.31123 4.37350 4.52135 4.57395 4.59762 4.68645 4.74602 4.83867 4.87150 4.94109 5.00441 5.03218 5.16194 5.23347 5.25244 5.32215 5.35750 5.44575 5.51184 5.54538 5.68650 5.74546 6.16432 6.48419 6.50746 6.63915 6.91706 7.04447 7.48732 8.94874 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020837 B = 0.011347 C = 0.007761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.441115 B = 2467.039412 C = 3606.942802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C 0.063 3.937 4 N -0.549 5.549 5 C 0.066 3.934 6 C -0.117 4.117 7 H 0.058 0.942 8 C -0.130 4.130 9 C 0.067 3.933 10 N -0.707 5.707 11 C 0.098 3.902 12 C 0.211 3.789 13 H -0.053 1.053 14 C -0.524 4.524 15 H 0.059 0.941 16 C 0.014 3.986 17 N -0.911 5.911 18 Si 0.954 3.046 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.272 1.272 22 H 0.072 0.928 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.006 0.994 28 H 0.068 0.932 29 H 0.010 0.990 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.328 0.672 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.942 -10.675 5.859 12.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.064 4.064 4 N -0.272 5.272 5 C -0.061 4.061 6 C -0.138 4.138 7 H 0.077 0.923 8 C -0.189 4.189 9 C -0.062 4.062 10 N -0.335 5.335 11 C -0.032 4.032 12 C 0.100 3.900 13 H -0.036 1.036 14 C -0.563 4.563 15 H 0.077 0.923 16 C -0.185 4.185 17 N -0.550 5.550 18 Si 0.780 3.220 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.197 1.197 22 H 0.091 0.909 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.024 0.976 28 H 0.087 0.913 29 H 0.029 0.971 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.145 0.855 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.073 -10.694 5.221 11.949 hybrid contribution -1.389 1.203 -0.115 1.842 sum -2.462 -9.490 5.106 11.055 Atomic orbital electron populations 1.21697 0.94611 1.02303 1.01584 1.21490 0.96105 0.95204 1.01858 1.22105 0.87309 0.97217 0.99775 1.59306 1.07397 1.29958 1.30555 1.21969 0.96576 0.98063 0.89461 1.21526 0.94299 0.97253 1.00688 0.92345 1.21744 1.02249 0.96274 0.98592 1.22484 0.96982 0.87126 0.99600 1.59711 1.52050 1.16618 1.05117 1.21580 0.92543 0.99353 0.89748 1.18471 0.93784 0.84104 0.93600 1.03593 1.21467 1.27790 0.98956 1.08106 0.92253 1.25699 0.95806 0.96745 1.00277 1.70069 1.36876 1.07732 1.40329 0.85669 0.78882 0.77152 0.80277 1.19803 1.21096 1.19709 0.90896 0.92811 0.93344 0.92334 0.91683 0.97596 0.91344 0.97125 0.89530 0.91981 0.92101 0.91621 0.91745 0.90513 0.85482 0.94326 0.91855 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.91 71.98 0.71 -2.91 16 2 C -0.11 -3.31 5.95 30.59 0.18 -3.13 16 3 C 0.06 2.52 4.66 86.30 0.40 2.92 16 4 N -0.55 -23.51 3.88 -890.70 -3.45 -26.96 16 5 C 0.07 2.34 4.66 85.39 0.40 2.74 16 6 C -0.12 -3.69 2.25 -11.27 -0.03 -3.72 16 7 H 0.06 2.12 7.23 -2.39 -0.02 2.11 16 8 C -0.13 -2.95 8.85 71.98 0.64 -2.31 16 9 C 0.07 2.23 5.87 86.31 0.51 2.74 16 10 N -0.71 -30.04 6.53 -512.98 -3.35 -33.39 16 11 C 0.10 4.85 5.49 87.14 0.48 5.33 16 12 C 0.21 10.74 1.40 45.82 0.06 10.81 16 13 H -0.05 -3.09 7.57 -2.38 -0.02 -3.11 16 14 C -0.52 -28.87 7.34 25.60 0.19 -28.68 16 15 H 0.06 3.25 6.34 -2.91 -0.02 3.24 16 16 C 0.01 0.80 5.17 84.65 0.44 1.24 16 17 N -0.91 -52.97 11.62 21.45 0.25 -52.72 16 18 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 26 H 0.06 1.79 6.36 -2.39 -0.02 1.77 16 27 H 0.01 0.24 8.10 -2.39 -0.02 0.22 16 28 H 0.07 3.09 5.42 -2.39 -0.01 3.08 16 29 H 0.01 0.40 7.13 -2.39 -0.02 0.38 16 30 H 0.09 2.65 5.53 -2.39 -0.01 2.63 16 31 H 0.06 1.26 8.11 -2.39 -0.02 1.24 16 32 H 0.06 1.28 8.02 -2.39 -0.02 1.26 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.08 2.19 7.95 -2.39 -0.02 2.17 16 36 H 0.33 14.44 7.50 -89.70 -0.67 13.77 16 37 H 0.04 1.90 6.93 -2.39 -0.02 1.88 16 38 H 0.06 3.62 6.10 -2.39 -0.01 3.60 16 39 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -59.95 289.90 -0.21 -60.16 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.34 Total: 21.90 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 3.98 Total: -14.98 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -6.56 Total: -113.07 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -59.95 -0.21 -60.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249991303.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.640 kcal (2) G-P(sol) polarization free energy of solvation -59.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds