Wall clock time and date at job start Mon Mar 30 2020 03:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52993 * 109.47419 * 2 1 4 4 N 1.46897 * 109.47511 * 179.97438 * 3 2 1 5 5 C 1.48066 * 110.99862 * 69.31678 * 4 3 2 6 6 C 1.53705 * 112.47339 * 192.19813 * 5 4 3 7 7 H 1.08994 * 108.95220 * 79.22728 * 6 5 4 8 8 C 1.52995 * 108.95344 * 197.96668 * 6 5 4 9 9 C 1.50805 * 112.09736 * 318.55459 * 6 5 4 10 10 N 1.47901 * 108.49107 * 92.55191 * 9 6 5 11 11 C 1.40014 * 114.07243 * 280.06821 * 10 9 6 12 12 C 1.44572 * 111.00007 * 301.63041 * 4 3 2 13 13 H 1.09004 * 109.57391 * 100.53320 * 12 4 3 14 14 C 1.50690 * 109.57527 * 340.15153 * 12 4 3 15 15 H 1.08005 * 119.99926 * 354.23597 * 14 12 4 16 16 C 1.37877 * 120.00609 * 174.23571 * 14 12 4 17 17 N 1.31515 * 120.00646 * 180.02562 * 16 14 12 18 18 Si 1.86807 * 119.99639 * 359.97438 * 16 14 12 19 19 H 1.48495 * 109.46775 * 90.00208 * 18 16 14 20 20 H 1.48497 * 109.47122 * 210.00291 * 18 16 14 21 21 H 1.48499 * 109.46938 * 330.00182 * 18 16 14 22 22 H 1.09007 * 109.47440 * 300.00159 * 1 2 3 23 23 H 1.09001 * 109.47266 * 59.99529 * 1 2 3 24 24 H 1.09004 * 109.47498 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47440 * 239.99841 * 2 1 3 26 26 H 1.09001 * 109.47266 * 120.00471 * 2 1 3 27 27 H 1.08997 * 109.47437 * 59.99817 * 3 2 1 28 28 H 1.09006 * 109.47103 * 300.00031 * 3 2 1 29 29 H 1.09000 * 108.88243 * 312.96947 * 5 4 3 30 30 H 1.08998 * 108.88461 * 71.42879 * 5 4 3 31 31 H 1.08998 * 109.47598 * 60.00302 * 8 6 5 32 32 H 1.09000 * 109.46828 * 179.97438 * 8 6 5 33 33 H 1.08997 * 109.47380 * 299.99743 * 8 6 5 34 34 H 1.09002 * 109.62846 * 212.25283 * 9 6 5 35 35 H 1.08997 * 109.63204 * 332.84717 * 9 6 5 36 36 H 1.00897 * 111.00404 * 153.77156 * 10 9 6 37 37 H 1.08997 * 108.96343 * 182.48263 * 11 10 9 38 38 H 1.09001 * 108.95742 * 301.22398 * 11 10 9 39 39 H 0.96996 * 120.00696 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5089 1.4424 0.0006 5 6 4.0401 0.9540 -1.2923 6 6 5.5466 0.6552 -1.2334 7 1 5.6971 -0.3133 -0.7568 8 6 6.0980 0.5980 -2.6594 9 6 6.3033 1.7051 -0.4591 10 7 6.4008 1.2689 0.9507 11 6 5.2433 1.5042 1.7027 12 6 4.0266 0.7348 1.1501 13 1 4.3328 -0.2685 0.8539 14 6 2.9603 0.6472 2.2113 15 1 2.0201 1.1613 2.0759 16 6 3.1847 -0.0892 3.3552 17 7 2.2540 -0.1660 4.2811 18 14 4.8105 -0.9789 3.5891 19 1 5.7719 -0.0804 4.2772 20 1 4.5947 -2.1962 4.4118 21 1 5.3572 -1.3675 2.2642 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8899 28 1 1.6766 1.9563 -0.8900 29 1 3.5103 0.0427 -1.5696 30 1 3.8602 1.7106 -2.0560 31 1 5.9320 1.5561 -3.1519 32 1 7.1669 0.3869 -2.6274 33 1 5.5883 -0.1892 -3.2148 34 1 7.3035 1.8186 -0.8774 35 1 5.7708 2.6546 -0.5128 36 1 7.2108 1.6707 1.3985 37 1 5.4207 1.1940 2.7324 38 1 5.0224 2.5715 1.6878 39 1 2.4117 -0.6844 5.0857 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249991306.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:12 Heat of formation + Delta-G solvation = 18.758482 kcal Electronic energy + Delta-G solvation = -17414.001208 eV Core-core repulsion = 14970.964092 eV Total energy + Delta-G solvation = -2443.037116 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.04519 -35.73080 -33.94822 -32.21675 -31.54799 -28.35001 -26.24337 -25.59568 -23.77196 -22.41565 -20.94518 -19.76797 -18.25861 -17.09917 -15.99868 -15.00171 -14.71735 -14.21855 -13.94052 -13.81719 -13.46243 -12.92152 -12.57714 -12.47232 -12.26953 -11.87603 -11.66556 -11.23699 -11.05204 -10.83974 -10.67715 -10.52008 -10.40197 -10.25743 -10.05963 -9.78897 -9.58861 -9.50017 -8.72873 -8.53193 -7.62992 -7.07762 -6.06784 -4.05278 3.32527 3.43061 3.55827 4.44443 4.85384 4.86535 5.22405 5.24299 5.45281 5.60055 5.82873 5.86936 5.91086 5.96877 6.06950 6.12198 6.17152 6.20659 6.27768 6.35000 6.43870 6.46957 6.61999 6.65384 6.67788 6.77793 6.82451 6.84398 7.19321 7.32728 7.49346 7.59731 7.91566 8.10756 8.16455 8.32009 8.72971 8.97463 9.54157 11.02399 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020575 B = 0.014369 C = 0.009574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.560209 B = 1948.145269 C = 2923.764641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.169 4.169 3 C 0.078 3.922 4 N -0.544 5.544 5 C 0.066 3.934 6 C -0.095 4.095 7 H 0.077 0.923 8 C -0.140 4.140 9 C 0.080 3.920 10 N -0.705 5.705 11 C 0.073 3.927 12 C 0.195 3.805 13 H 0.017 0.983 14 C -0.524 4.524 15 H 0.098 0.902 16 C 0.073 3.927 17 N -0.895 5.895 18 Si 0.873 3.127 19 H -0.279 1.279 20 H -0.299 1.299 21 H -0.253 1.253 22 H 0.054 0.946 23 H 0.036 0.964 24 H 0.041 0.959 25 H 0.035 0.965 26 H 0.112 0.888 27 H 0.088 0.912 28 H 0.039 0.961 29 H 0.028 0.972 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.044 0.956 36 H 0.329 0.671 37 H 0.060 0.940 38 H 0.017 0.983 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.832 1.864 -10.100 11.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.207 4.207 3 C -0.049 4.049 4 N -0.267 5.267 5 C -0.062 4.062 6 C -0.114 4.114 7 H 0.095 0.905 8 C -0.199 4.199 9 C -0.048 4.048 10 N -0.336 5.336 11 C -0.058 4.058 12 C 0.086 3.914 13 H 0.035 0.965 14 C -0.562 4.562 15 H 0.116 0.884 16 C -0.130 4.130 17 N -0.533 5.533 18 Si 0.702 3.298 19 H -0.206 1.206 20 H -0.226 1.226 21 H -0.177 1.177 22 H 0.074 0.926 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.130 0.870 27 H 0.106 0.894 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.147 0.853 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.733 1.648 -10.019 11.202 hybrid contribution 0.669 -0.424 0.379 0.878 sum 5.402 1.224 -9.640 11.118 Atomic orbital electron populations 1.21604 0.97186 1.00323 1.00538 1.22513 0.95034 0.99772 1.03409 1.21980 0.87091 0.95477 1.00364 1.60927 1.07095 1.57123 1.01600 1.22368 0.93664 0.97703 0.92448 1.21026 0.94538 1.00748 0.95076 0.90492 1.21826 1.00363 1.01256 0.96412 1.21567 0.98134 0.96689 0.88432 1.57823 1.06552 1.66263 1.02948 1.21342 0.90109 0.98505 0.95859 1.19448 0.92173 0.91266 0.88478 0.96502 1.21562 1.01840 1.31339 1.01467 0.88446 1.24975 0.96355 0.96023 0.95606 1.69885 1.33596 1.41083 1.08744 0.86995 0.84621 0.78976 0.79226 1.20603 1.22588 1.17709 0.92640 0.94518 0.93982 0.94584 0.87016 0.89429 0.94274 0.95418 0.92641 0.92986 0.92856 0.93067 0.92415 0.93810 0.85322 0.92187 0.96502 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.91 37.15 0.37 -2.09 16 2 C -0.17 -3.40 5.03 -26.74 -0.13 -3.54 16 3 C 0.08 1.59 4.77 -3.83 -0.02 1.57 16 4 N -0.54 -11.34 4.12 -227.64 -0.94 -12.27 16 5 C 0.07 1.18 4.73 -2.81 -0.01 1.17 16 6 C -0.09 -1.56 2.25 -91.36 -0.21 -1.77 16 7 H 0.08 1.46 7.23 -51.93 -0.38 1.09 16 8 C -0.14 -1.78 8.85 37.15 0.33 -1.46 16 9 C 0.08 1.32 5.73 -4.37 -0.03 1.30 16 10 N -0.71 -13.30 6.21 -118.33 -0.73 -14.03 16 11 C 0.07 1.61 4.80 -6.75 -0.03 1.57 16 12 C 0.20 4.56 0.92 -69.49 -0.06 4.49 16 13 H 0.02 0.44 5.57 -51.93 -0.29 0.15 16 14 C -0.52 -13.87 5.95 -34.45 -0.20 -14.08 16 15 H 0.10 2.73 4.79 -52.48 -0.25 2.47 16 16 C 0.07 2.03 5.42 -17.82 -0.10 1.94 16 17 N -0.90 -26.42 13.96 55.43 0.77 -25.65 16 18 Si 0.87 21.77 24.80 -169.99 -4.21 17.56 16 19 H -0.28 -6.86 6.87 56.52 0.39 -6.48 16 20 H -0.30 -7.54 7.11 56.52 0.40 -7.13 16 21 H -0.25 -6.28 6.37 56.52 0.36 -5.92 16 22 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.69 6.44 -51.93 -0.33 0.35 16 26 H 0.11 2.69 5.27 -51.93 -0.27 2.42 16 27 H 0.09 1.96 5.85 -51.93 -0.30 1.66 16 28 H 0.04 0.71 8.09 -51.93 -0.42 0.29 16 29 H 0.03 0.51 6.16 -51.93 -0.32 0.19 16 30 H 0.06 0.91 7.95 -51.93 -0.41 0.50 16 31 H 0.05 0.61 8.11 -51.93 -0.42 0.18 16 32 H 0.05 0.62 8.02 -51.93 -0.42 0.20 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.80 7.66 -51.93 -0.40 0.40 16 35 H 0.04 0.76 7.57 -51.93 -0.39 0.37 16 36 H 0.33 5.39 8.85 -39.29 -0.35 5.05 16 37 H 0.06 1.43 4.49 -51.93 -0.23 1.19 16 38 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 278.80 15.07 4.20 4.20 Total: -1.00 -28.34 278.80 -7.50 -35.84 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.49 Total: 5.24 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -0.10 Total: -10.89 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.90 Total: -51.95 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.21 Total: 17.56 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.34 -7.50 -35.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249991306.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.601 kcal (2) G-P(sol) polarization free energy of solvation -28.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds