Wall clock time and date at job start Mon Mar 30 2020 03:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52993 * 109.47419 * 2 1 4 4 N 1.46897 * 109.47511 * 179.97438 * 3 2 1 5 5 C 1.48066 * 110.99862 * 69.31678 * 4 3 2 6 6 C 1.53705 * 112.47339 * 192.19813 * 5 4 3 7 7 H 1.08994 * 108.95220 * 79.22728 * 6 5 4 8 8 C 1.52995 * 108.95344 * 197.96668 * 6 5 4 9 9 C 1.50805 * 112.09736 * 318.55459 * 6 5 4 10 10 N 1.47901 * 108.49107 * 92.55191 * 9 6 5 11 11 C 1.40014 * 114.07243 * 280.06821 * 10 9 6 12 12 C 1.44572 * 111.00007 * 301.63041 * 4 3 2 13 13 H 1.09004 * 109.57391 * 100.53320 * 12 4 3 14 14 C 1.50690 * 109.57527 * 340.15153 * 12 4 3 15 15 H 1.08005 * 119.99926 * 354.23597 * 14 12 4 16 16 C 1.37877 * 120.00609 * 174.23571 * 14 12 4 17 17 N 1.31515 * 120.00646 * 180.02562 * 16 14 12 18 18 Si 1.86807 * 119.99639 * 359.97438 * 16 14 12 19 19 H 1.48495 * 109.46775 * 90.00208 * 18 16 14 20 20 H 1.48497 * 109.47122 * 210.00291 * 18 16 14 21 21 H 1.48499 * 109.46938 * 330.00182 * 18 16 14 22 22 H 1.09007 * 109.47440 * 300.00159 * 1 2 3 23 23 H 1.09001 * 109.47266 * 59.99529 * 1 2 3 24 24 H 1.09004 * 109.47498 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47440 * 239.99841 * 2 1 3 26 26 H 1.09001 * 109.47266 * 120.00471 * 2 1 3 27 27 H 1.08997 * 109.47437 * 59.99817 * 3 2 1 28 28 H 1.09006 * 109.47103 * 300.00031 * 3 2 1 29 29 H 1.09000 * 108.88243 * 312.96947 * 5 4 3 30 30 H 1.08998 * 108.88461 * 71.42879 * 5 4 3 31 31 H 1.08998 * 109.47598 * 60.00302 * 8 6 5 32 32 H 1.09000 * 109.46828 * 179.97438 * 8 6 5 33 33 H 1.08997 * 109.47380 * 299.99743 * 8 6 5 34 34 H 1.09002 * 109.62846 * 212.25283 * 9 6 5 35 35 H 1.08997 * 109.63204 * 332.84717 * 9 6 5 36 36 H 1.00897 * 111.00404 * 153.77156 * 10 9 6 37 37 H 1.08997 * 108.96343 * 182.48263 * 11 10 9 38 38 H 1.09001 * 108.95742 * 301.22398 * 11 10 9 39 39 H 0.96996 * 120.00696 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5089 1.4424 0.0006 5 6 4.0401 0.9540 -1.2923 6 6 5.5466 0.6552 -1.2334 7 1 5.6971 -0.3133 -0.7568 8 6 6.0980 0.5980 -2.6594 9 6 6.3033 1.7051 -0.4591 10 7 6.4008 1.2689 0.9507 11 6 5.2433 1.5042 1.7027 12 6 4.0266 0.7348 1.1501 13 1 4.3328 -0.2685 0.8539 14 6 2.9603 0.6472 2.2113 15 1 2.0201 1.1613 2.0759 16 6 3.1847 -0.0892 3.3552 17 7 2.2540 -0.1660 4.2811 18 14 4.8105 -0.9789 3.5891 19 1 5.7719 -0.0804 4.2772 20 1 4.5947 -2.1962 4.4118 21 1 5.3572 -1.3675 2.2642 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8899 28 1 1.6766 1.9563 -0.8900 29 1 3.5103 0.0427 -1.5696 30 1 3.8602 1.7106 -2.0560 31 1 5.9320 1.5561 -3.1519 32 1 7.1669 0.3869 -2.6274 33 1 5.5883 -0.1892 -3.2148 34 1 7.3035 1.8186 -0.8774 35 1 5.7708 2.6546 -0.5128 36 1 7.2108 1.6707 1.3985 37 1 5.4207 1.1940 2.7324 38 1 5.0224 2.5715 1.6878 39 1 2.4117 -0.6844 5.0857 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249991306.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:12 Heat of formation + Delta-G solvation = -2.381343 kcal Electronic energy + Delta-G solvation = -17414.917899 eV Core-core repulsion = 14970.964092 eV Total energy + Delta-G solvation = -2443.953807 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.65472 -37.28120 -35.52358 -34.13634 -33.17019 -30.07003 -27.79625 -26.97882 -25.48142 -24.03550 -22.62306 -21.24869 -19.95304 -19.01823 -17.63505 -16.67296 -16.27618 -16.00780 -15.55156 -15.45380 -15.06497 -14.59528 -14.23224 -13.90219 -13.67617 -13.55127 -13.02910 -12.87221 -12.61633 -12.46452 -12.37133 -12.13328 -12.00100 -11.73595 -11.58211 -11.51288 -11.30058 -11.21928 -10.69586 -10.64142 -9.17247 -8.76893 -8.22955 -6.22370 1.31032 1.37327 1.52730 2.35866 3.06229 3.29652 3.49081 3.99084 4.13261 4.22483 4.32892 4.39370 4.52295 4.58462 4.61208 4.76060 4.78504 4.82898 4.86868 4.89066 4.97141 5.00487 5.04818 5.14151 5.25510 5.29405 5.37419 5.43496 5.49726 5.56792 5.61216 5.82967 6.10522 6.41454 6.48294 6.73578 6.85630 6.88906 7.39888 8.88948 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020575 B = 0.014369 C = 0.009574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.560209 B = 1948.145269 C = 2923.764641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.161 4.161 3 C 0.082 3.918 4 N -0.551 5.551 5 C 0.064 3.936 6 C -0.095 4.095 7 H 0.049 0.951 8 C -0.131 4.131 9 C 0.082 3.918 10 N -0.713 5.713 11 C 0.087 3.913 12 C 0.205 3.795 13 H -0.003 1.003 14 C -0.511 4.511 15 H 0.075 0.925 16 C 0.023 3.977 17 N -0.940 5.940 18 Si 0.927 3.073 19 H -0.271 1.271 20 H -0.303 1.303 21 H -0.251 1.251 22 H 0.037 0.963 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.023 0.977 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.037 0.963 36 H 0.346 0.654 37 H 0.040 0.960 38 H 0.008 0.992 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.360 2.302 -12.624 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.200 4.200 3 C -0.046 4.046 4 N -0.274 5.274 5 C -0.063 4.063 6 C -0.114 4.114 7 H 0.067 0.933 8 C -0.189 4.189 9 C -0.046 4.046 10 N -0.345 5.345 11 C -0.045 4.045 12 C 0.096 3.904 13 H 0.015 0.985 14 C -0.549 4.549 15 H 0.093 0.907 16 C -0.175 4.175 17 N -0.580 5.580 18 Si 0.755 3.245 19 H -0.197 1.197 20 H -0.231 1.231 21 H -0.175 1.175 22 H 0.056 0.944 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.055 0.945 36 H 0.165 0.835 37 H 0.058 0.942 38 H 0.026 0.974 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.284 2.098 -12.567 14.206 hybrid contribution 0.142 -0.522 1.072 1.201 sum 6.426 1.576 -11.495 13.263 Atomic orbital electron populations 1.21542 0.95318 1.01088 1.01097 1.22313 0.96733 0.99298 1.01618 1.21904 0.87013 0.95386 1.00261 1.60949 1.07396 1.56840 1.02259 1.22518 0.94721 0.98129 0.90981 1.21045 0.93708 0.99157 0.97532 0.93290 1.21749 1.01088 1.02453 0.93607 1.21676 1.00046 0.96066 0.86778 1.57723 1.05781 1.66826 1.04167 1.20987 0.90888 0.97370 0.95249 1.19188 0.91823 0.90799 0.88612 0.98518 1.21793 1.01841 1.29485 1.01778 0.90722 1.25592 0.98957 0.97224 0.95748 1.70001 1.35491 1.42959 1.09582 0.86123 0.81602 0.77809 0.78965 1.19728 1.23063 1.17509 0.94396 0.91549 0.93176 0.93347 0.91536 0.92381 0.91363 0.95875 0.90305 0.91378 0.91387 0.92479 0.88967 0.94501 0.83476 0.94160 0.97427 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 9.91 71.98 0.71 -3.89 16 2 C -0.16 -6.47 5.03 30.59 0.15 -6.31 16 3 C 0.08 3.27 4.77 86.30 0.41 3.68 16 4 N -0.55 -22.46 4.12 -874.13 -3.60 -26.06 16 5 C 0.06 2.12 4.73 86.32 0.41 2.53 16 6 C -0.09 -2.86 2.25 -11.27 -0.03 -2.89 16 7 H 0.05 1.77 7.23 -2.39 -0.02 1.75 16 8 C -0.13 -2.77 8.85 71.98 0.64 -2.13 16 9 C 0.08 2.44 5.73 85.40 0.49 2.93 16 10 N -0.71 -25.45 6.21 -528.27 -3.28 -28.72 16 11 C 0.09 3.78 4.80 87.95 0.42 4.20 16 12 C 0.21 9.62 0.92 45.01 0.04 9.66 16 13 H 0.00 -0.14 5.57 -2.39 -0.01 -0.15 16 14 C -0.51 -27.88 5.95 25.60 0.15 -27.73 16 15 H 0.08 4.38 4.79 -2.91 -0.01 4.37 16 16 C 0.02 1.31 5.42 84.65 0.46 1.77 16 17 N -0.94 -57.57 13.96 21.45 0.30 -57.27 16 18 Si 0.93 46.00 24.80 68.60 1.70 47.70 16 19 H -0.27 -12.98 6.87 99.48 0.68 -12.30 16 20 H -0.30 -15.11 7.11 99.48 0.71 -14.41 16 21 H -0.25 -12.25 6.37 99.48 0.63 -11.62 16 22 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.05 1.80 6.44 -2.38 -0.02 1.79 16 26 H 0.07 3.30 5.27 -2.39 -0.01 3.29 16 27 H 0.06 2.66 5.85 -2.39 -0.01 2.65 16 28 H 0.07 2.33 8.09 -2.38 -0.02 2.31 16 29 H 0.02 0.79 6.16 -2.39 -0.01 0.78 16 30 H 0.08 2.28 7.95 -2.39 -0.02 2.26 16 31 H 0.07 1.25 8.11 -2.39 -0.02 1.23 16 32 H 0.07 1.27 8.02 -2.39 -0.02 1.25 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 2.13 7.66 -2.39 -0.02 2.11 16 35 H 0.04 1.17 7.57 -2.39 -0.02 1.15 16 36 H 0.35 10.47 8.85 -89.70 -0.79 9.67 16 37 H 0.04 1.90 4.49 -2.39 -0.01 1.89 16 38 H 0.01 0.34 8.06 -2.39 -0.02 0.33 16 39 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -62.73 278.80 -0.88 -63.60 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.14 Total: 18.94 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 3.86 Total: -18.18 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -6.58 Total: -112.06 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.70 Total: 47.70 kcal Total: -62.73 -0.88 -63.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249991306.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.219 kcal (2) G-P(sol) polarization free energy of solvation -62.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds