Wall clock time and date at job start Mon Mar 30 2020 03:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46714 * 2 1 4 4 N 1.46899 * 109.47163 * 180.02562 * 3 2 1 5 5 C 1.46956 * 111.00293 * 169.99976 * 4 3 2 6 6 C 1.53056 * 109.38342 * 183.17592 * 5 4 3 7 7 H 1.08992 * 109.49038 * 61.57437 * 6 5 4 8 8 C 1.53000 * 109.48806 * 181.64241 * 6 5 4 9 9 N 1.46963 * 109.35944 * 301.62902 * 6 5 4 10 10 C 1.46903 * 110.99595 * 183.16796 * 9 6 5 11 11 C 1.46956 * 110.89784 * 59.28921 * 9 6 5 12 12 H 1.09003 * 109.49203 * 60.65575 * 11 9 6 13 13 C 1.50697 * 109.50621 * 180.71015 * 11 9 6 14 14 H 1.08004 * 120.00215 * 359.90022 * 13 11 9 15 15 C 1.37881 * 120.00067 * 179.90508 * 13 11 9 16 16 N 1.31516 * 119.99984 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99835 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47147 * 90.00063 * 17 15 13 19 19 H 1.48506 * 109.46862 * 209.99415 * 17 15 13 20 20 H 1.48498 * 109.47494 * 329.99812 * 17 15 13 21 21 C 1.46962 * 110.99604 * 293.79788 * 4 3 2 22 22 H 1.09001 * 109.47667 * 60.00141 * 1 2 3 23 23 H 1.08997 * 109.46934 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47018 * 300.00053 * 1 2 3 25 25 H 1.09003 * 109.47183 * 240.00649 * 2 1 3 26 26 H 1.09000 * 109.47455 * 119.99353 * 2 1 3 27 27 H 1.08997 * 109.47421 * 60.00195 * 3 2 1 28 28 H 1.09001 * 109.47359 * 299.99974 * 3 2 1 29 29 H 1.09002 * 109.48806 * 303.15319 * 5 4 3 30 30 H 1.09002 * 109.49141 * 63.19591 * 5 4 3 31 31 H 1.08999 * 109.47116 * 60.00152 * 8 6 5 32 32 H 1.09001 * 109.46711 * 179.97438 * 8 6 5 33 33 H 1.09000 * 109.46913 * 300.00134 * 8 6 5 34 34 H 1.09005 * 109.46758 * 296.17841 * 10 9 6 35 35 H 1.08995 * 109.47385 * 56.17701 * 10 9 6 36 36 H 1.08996 * 109.47025 * 176.17999 * 10 9 6 37 37 H 0.96998 * 119.99849 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.48625 * 296.77747 * 21 4 3 39 39 H 1.09001 * 109.49014 * 56.84362 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4427 -0.0006 5 6 4.0354 2.7938 -0.2389 6 6 5.5633 2.7382 -0.3109 7 1 5.8652 2.1032 -1.1437 8 6 6.1162 4.1497 -0.5181 9 7 6.0903 2.1840 0.9440 10 6 7.5593 2.1841 0.9435 11 6 5.5638 0.8328 1.1823 12 1 5.8654 0.1759 0.3664 13 6 6.1094 0.3023 2.4829 14 1 6.7817 0.9072 3.0734 15 6 5.7505 -0.9555 2.9192 16 7 4.9316 -1.6919 2.2005 17 14 6.4275 -1.6133 4.5312 18 1 5.5144 -1.2391 5.6410 19 1 6.5348 -3.0926 4.4560 20 1 7.7712 -1.0314 4.7781 21 6 4.0360 0.8889 1.2545 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5137 -0.8901 26 1 1.8934 -0.5137 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 3.6407 3.1772 -1.1798 30 1 3.7335 3.4509 0.5768 31 1 5.8148 4.7840 0.3156 32 1 7.2043 4.1098 -0.5689 33 1 5.7234 4.5609 -1.4480 34 1 7.9224 1.5235 0.1560 35 1 7.9226 3.1961 0.7650 36 1 7.9230 1.8325 1.9089 37 1 4.6788 -2.5766 2.5076 38 1 3.7344 1.5242 2.0872 39 1 3.6418 -0.1165 1.4023 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250015849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:54 Heat of formation + Delta-G solvation = 4.037014 kcal Electronic energy + Delta-G solvation = -16941.108268 eV Core-core repulsion = 14497.432781 eV Total energy + Delta-G solvation = -2443.675487 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.67203 -35.60323 -33.33080 -32.38213 -30.88320 -27.83044 -26.34663 -25.21129 -24.48872 -21.81647 -21.18758 -19.86409 -18.63215 -16.35626 -15.26310 -15.01785 -14.72083 -14.30412 -14.07792 -13.58596 -13.26839 -12.94681 -12.60808 -12.30485 -11.90940 -11.65868 -11.50669 -11.32978 -11.17937 -10.99641 -10.84086 -10.67744 -10.53671 -10.35920 -10.20133 -10.01904 -9.87665 -9.32663 -8.89154 -8.45262 -7.45590 -7.09650 -6.02652 -4.07182 3.30248 3.36837 3.40063 4.39311 4.69449 5.01166 5.28551 5.43760 5.50253 5.54982 5.74936 5.76248 5.88941 5.96119 6.03398 6.05115 6.12635 6.21146 6.24301 6.34482 6.35859 6.44821 6.48405 6.67452 6.71955 6.79409 6.87485 6.89801 7.04330 7.42522 7.61167 7.79020 7.97696 8.04489 8.19438 8.35779 8.65397 9.00751 9.57796 11.03954 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.017606 B = 0.012142 C = 0.007493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.994400 B = 2305.507164 C = 3735.895445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.062 3.938 4 N -0.547 5.547 5 C 0.069 3.931 6 C 0.081 3.919 7 H 0.036 0.964 8 C -0.142 4.142 9 N -0.538 5.538 10 C 0.037 3.963 11 C 0.223 3.777 12 H 0.007 0.993 13 C -0.507 4.507 14 H 0.064 0.936 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.897 3.103 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.065 3.935 22 H 0.047 0.953 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.022 0.978 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.030 0.970 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.010 0.990 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.261 0.739 38 H 0.013 0.987 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.509 6.255 -4.605 8.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.067 4.067 4 N -0.271 5.271 5 C -0.060 4.060 6 C -0.029 4.029 7 H 0.054 0.946 8 C -0.200 4.200 9 N -0.264 5.264 10 C -0.111 4.111 11 C 0.116 3.884 12 H 0.025 0.975 13 C -0.546 4.546 14 H 0.083 0.917 15 C -0.141 4.141 16 N -0.528 5.528 17 Si 0.725 3.275 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.062 4.062 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.029 0.971 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.031 0.969 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.599 6.062 -4.602 8.419 hybrid contribution 0.272 -0.412 0.861 0.992 sum -3.327 5.650 -3.741 7.549 Atomic orbital electron populations 1.21731 0.96636 1.01151 1.00969 1.21521 0.94092 0.96828 1.03539 1.21996 0.88831 0.96772 0.99055 1.62332 1.05963 1.20335 1.38512 1.22043 0.94458 0.90426 0.99086 1.21552 0.94030 0.94882 0.92416 0.94643 1.21856 1.00713 0.96669 1.00784 1.62258 1.06801 1.26509 1.30853 1.22225 0.88978 0.98517 1.01423 1.19251 0.90352 0.82580 0.96212 0.97527 1.21155 1.27993 0.99916 1.05498 0.91742 1.24953 0.95186 0.96695 0.97263 1.69880 1.34390 1.10745 1.37824 0.86521 0.79402 0.77889 0.83733 1.20705 1.21280 1.19927 1.22548 0.97316 1.00748 0.85554 0.93352 0.92947 0.93255 0.91559 0.90806 0.95970 0.92399 0.92199 0.95187 0.92340 0.92611 0.93156 0.97114 0.93477 0.90807 0.92884 0.96873 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.12 -2.11 5.87 -26.73 -0.16 -2.26 16 3 C 0.06 1.11 4.96 -3.82 -0.02 1.09 16 4 N -0.55 -11.54 4.71 -234.46 -1.10 -12.64 16 5 C 0.07 1.30 4.89 -3.76 -0.02 1.28 16 6 C 0.08 1.56 2.56 -67.65 -0.17 1.39 16 7 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 8 C -0.14 -2.19 8.87 37.16 0.33 -1.86 16 9 N -0.54 -12.10 4.59 -228.14 -1.05 -13.15 16 10 C 0.04 0.75 8.90 60.07 0.53 1.29 16 11 C 0.22 5.76 1.95 -68.81 -0.13 5.63 16 12 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 13 C -0.51 -13.91 7.93 -34.44 -0.27 -14.18 16 14 H 0.06 1.77 6.45 -52.48 -0.34 1.43 16 15 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 16 N -0.89 -25.00 11.34 55.43 0.63 -24.37 16 17 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 C 0.07 1.61 4.45 -3.76 -0.02 1.59 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.07 1.47 6.49 -51.93 -0.34 1.13 16 27 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 28 H 0.06 0.92 8.03 -51.93 -0.42 0.50 16 29 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.82 6.28 -51.93 -0.33 0.49 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.05 0.81 6.04 -51.93 -0.31 0.50 16 36 H 0.07 1.58 6.28 -51.93 -0.33 1.25 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.11 3.01 4.32 -51.93 -0.22 2.78 16 LS Contribution 295.04 15.07 4.45 4.45 Total: -1.00 -28.18 295.04 -8.66 -36.84 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.91 Total: -1.20 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 0.35 Total: -6.12 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -1.52 Total: -50.16 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.18 -8.66 -36.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250015849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.881 kcal (2) G-P(sol) polarization free energy of solvation -28.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds