Wall clock time and date at job start Mon Mar 30 2020 03:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46714 * 2 1 4 4 N 1.46899 * 109.47163 * 180.02562 * 3 2 1 5 5 C 1.46956 * 111.00293 * 169.99976 * 4 3 2 6 6 C 1.53056 * 109.38342 * 183.17592 * 5 4 3 7 7 H 1.08992 * 109.49038 * 61.57437 * 6 5 4 8 8 C 1.53000 * 109.48806 * 181.64241 * 6 5 4 9 9 N 1.46963 * 109.35944 * 301.62902 * 6 5 4 10 10 C 1.46903 * 110.99595 * 183.16796 * 9 6 5 11 11 C 1.46956 * 110.89784 * 59.28921 * 9 6 5 12 12 H 1.09003 * 109.49203 * 60.65575 * 11 9 6 13 13 C 1.50697 * 109.50621 * 180.71015 * 11 9 6 14 14 H 1.08004 * 120.00215 * 359.90022 * 13 11 9 15 15 C 1.37881 * 120.00067 * 179.90508 * 13 11 9 16 16 N 1.31516 * 119.99984 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99835 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47147 * 90.00063 * 17 15 13 19 19 H 1.48506 * 109.46862 * 209.99415 * 17 15 13 20 20 H 1.48498 * 109.47494 * 329.99812 * 17 15 13 21 21 C 1.46962 * 110.99604 * 293.79788 * 4 3 2 22 22 H 1.09001 * 109.47667 * 60.00141 * 1 2 3 23 23 H 1.08997 * 109.46934 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47018 * 300.00053 * 1 2 3 25 25 H 1.09003 * 109.47183 * 240.00649 * 2 1 3 26 26 H 1.09000 * 109.47455 * 119.99353 * 2 1 3 27 27 H 1.08997 * 109.47421 * 60.00195 * 3 2 1 28 28 H 1.09001 * 109.47359 * 299.99974 * 3 2 1 29 29 H 1.09002 * 109.48806 * 303.15319 * 5 4 3 30 30 H 1.09002 * 109.49141 * 63.19591 * 5 4 3 31 31 H 1.08999 * 109.47116 * 60.00152 * 8 6 5 32 32 H 1.09001 * 109.46711 * 179.97438 * 8 6 5 33 33 H 1.09000 * 109.46913 * 300.00134 * 8 6 5 34 34 H 1.09005 * 109.46758 * 296.17841 * 10 9 6 35 35 H 1.08995 * 109.47385 * 56.17701 * 10 9 6 36 36 H 1.08996 * 109.47025 * 176.17999 * 10 9 6 37 37 H 0.96998 * 119.99849 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.48625 * 296.77747 * 21 4 3 39 39 H 1.09001 * 109.49014 * 56.84362 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4427 -0.0006 5 6 4.0354 2.7938 -0.2389 6 6 5.5633 2.7382 -0.3109 7 1 5.8652 2.1032 -1.1437 8 6 6.1162 4.1497 -0.5181 9 7 6.0903 2.1840 0.9440 10 6 7.5593 2.1841 0.9435 11 6 5.5638 0.8328 1.1823 12 1 5.8654 0.1759 0.3664 13 6 6.1094 0.3023 2.4829 14 1 6.7817 0.9072 3.0734 15 6 5.7505 -0.9555 2.9192 16 7 4.9316 -1.6919 2.2005 17 14 6.4275 -1.6133 4.5312 18 1 5.5144 -1.2391 5.6410 19 1 6.5348 -3.0926 4.4560 20 1 7.7712 -1.0314 4.7781 21 6 4.0360 0.8889 1.2545 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5137 -0.8901 26 1 1.8934 -0.5137 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 3.6407 3.1772 -1.1798 30 1 3.7335 3.4509 0.5768 31 1 5.8148 4.7840 0.3156 32 1 7.2043 4.1098 -0.5689 33 1 5.7234 4.5609 -1.4480 34 1 7.9224 1.5235 0.1560 35 1 7.9226 3.1961 0.7650 36 1 7.9230 1.8325 1.9089 37 1 4.6788 -2.5766 2.5076 38 1 3.7344 1.5242 2.0872 39 1 3.6418 -0.1165 1.4023 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250015849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:54 Heat of formation + Delta-G solvation = -15.301864 kcal Electronic energy + Delta-G solvation = -16941.946864 eV Core-core repulsion = 14497.432781 eV Total energy + Delta-G solvation = -2444.514083 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.37353 -37.17945 -35.29180 -33.83063 -32.65867 -29.54144 -27.78973 -27.20095 -26.01506 -23.36668 -22.97404 -21.38870 -20.36951 -18.42317 -17.10003 -16.65134 -16.28774 -15.88255 -15.81236 -15.25319 -14.93179 -14.62301 -14.00607 -13.93389 -13.50990 -13.04893 -12.96554 -12.88838 -12.83621 -12.69352 -12.49312 -12.35628 -12.03009 -11.97273 -11.89249 -11.84250 -11.48947 -11.03863 -10.84101 -10.53250 -9.15527 -8.93261 -8.12798 -6.25697 1.41174 1.41635 1.52215 2.40452 3.05603 3.22940 3.37375 4.01102 4.08263 4.19281 4.32624 4.35384 4.51479 4.54033 4.64604 4.67219 4.71227 4.74512 4.80412 4.85145 4.92918 5.01021 5.08607 5.10772 5.19495 5.22245 5.29731 5.36808 5.45479 5.51034 5.66033 5.70055 6.12827 6.26812 6.33212 6.52519 6.76747 6.89588 7.43495 8.92778 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.017606 B = 0.012142 C = 0.007493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.994400 B = 2305.507164 C = 3735.895445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.062 3.938 4 N -0.561 5.561 5 C 0.068 3.932 6 C 0.074 3.926 7 H 0.019 0.981 8 C -0.131 4.131 9 N -0.548 5.548 10 C 0.040 3.960 11 C 0.229 3.771 12 H -0.040 1.040 13 C -0.527 4.527 14 H 0.060 0.940 15 C 0.015 3.985 16 N -0.914 5.914 17 Si 0.961 3.039 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.268 1.268 21 C 0.084 3.916 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.036 0.964 27 H 0.021 0.979 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.027 0.973 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.001 0.999 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.263 0.737 38 H -0.009 1.009 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.970 7.830 -5.084 10.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.157 4.157 3 C -0.066 4.066 4 N -0.285 5.285 5 C -0.060 4.060 6 C -0.035 4.035 7 H 0.037 0.963 8 C -0.189 4.189 9 N -0.273 5.273 10 C -0.108 4.108 11 C 0.122 3.878 12 H -0.023 1.023 13 C -0.566 4.566 14 H 0.078 0.922 15 C -0.185 4.185 16 N -0.553 5.553 17 Si 0.786 3.214 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.044 4.044 22 H 0.089 0.911 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.039 0.961 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.020 0.980 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.009 0.991 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.061 7.660 -5.094 10.056 hybrid contribution 0.414 -0.886 0.941 1.357 sum -3.646 6.774 -4.154 8.743 Atomic orbital electron populations 1.21659 0.93412 1.02193 1.02291 1.21467 0.96864 0.96111 1.01212 1.22112 0.86779 0.97311 1.00360 1.62292 1.08099 1.21993 1.36138 1.22175 0.94209 0.89057 1.00593 1.21763 0.94625 0.96880 0.90199 0.96322 1.21781 1.01123 0.93583 1.02398 1.62254 1.07958 1.24105 1.33019 1.22229 0.87920 1.00435 1.00188 1.18997 0.91254 0.83655 0.93907 1.02271 1.21417 1.28372 1.00508 1.06276 0.92170 1.25738 0.95353 0.96884 1.00484 1.70021 1.35079 1.10921 1.39297 0.85514 0.78934 0.77268 0.79664 1.20149 1.20788 1.19254 1.22101 0.96567 0.99186 0.86551 0.91084 0.92147 0.92778 0.92503 0.94535 0.96108 0.89260 0.88760 0.95441 0.92097 0.91839 0.90168 0.98009 0.89774 0.92470 0.92830 0.99094 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.91 71.98 0.71 -2.81 16 2 C -0.12 -4.11 5.87 30.59 0.18 -3.93 16 3 C 0.06 2.16 4.96 86.30 0.43 2.58 16 4 N -0.56 -23.72 4.71 -895.69 -4.22 -27.94 16 5 C 0.07 2.46 4.89 86.31 0.42 2.88 16 6 C 0.07 2.80 2.56 44.92 0.12 2.91 16 7 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 8 C -0.13 -3.61 8.87 71.98 0.64 -2.97 16 9 N -0.55 -24.78 4.59 -875.69 -4.02 -28.80 16 10 C 0.04 1.64 8.90 127.69 1.14 2.77 16 11 C 0.23 12.34 1.95 44.17 0.09 12.43 16 12 H -0.04 -2.48 8.14 -2.39 -0.02 -2.50 16 13 C -0.53 -29.90 7.93 25.60 0.20 -29.70 16 14 H 0.06 3.38 6.45 -2.91 -0.02 3.37 16 15 C 0.01 0.83 5.30 84.66 0.45 1.28 16 16 N -0.91 -53.27 11.34 21.45 0.24 -53.02 16 17 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 C 0.08 4.30 4.45 86.31 0.38 4.69 16 22 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.04 1.52 6.49 -2.39 -0.02 1.50 16 27 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 28 H 0.09 2.56 8.03 -2.39 -0.02 2.54 16 29 H 0.09 2.78 8.07 -2.39 -0.02 2.76 16 30 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.65 6.28 -2.39 -0.01 1.63 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 35 H 0.08 2.75 6.04 -2.39 -0.01 2.73 16 36 H 0.06 2.48 6.28 -2.39 -0.02 2.46 16 37 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 38 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 39 H 0.09 4.94 4.32 -2.39 -0.01 4.93 16 Total: -1.00 -63.35 295.04 -0.23 -63.58 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.99 Total: 9.82 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 4.75 Total: -9.86 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -8.00 Total: -109.77 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -63.35 -0.23 -63.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250015849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.274 kcal (2) G-P(sol) polarization free energy of solvation -63.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds