Wall clock time and date at job start Mon Mar 30 2020 03:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47121 * 2 1 4 4 N 1.46903 * 109.47039 * 174.73258 * 3 2 1 5 5 C 1.44251 * 111.00204 * 302.10587 * 4 3 2 6 6 H 1.08999 * 108.78698 * 96.39654 * 5 4 3 7 7 C 1.50702 * 108.86922 * 337.92394 * 5 4 3 8 8 H 1.07998 * 119.99826 * 351.44774 * 7 5 4 9 9 C 1.37881 * 119.99965 * 171.72141 * 7 5 4 10 10 N 1.31506 * 120.00201 * 359.97438 * 9 7 5 11 11 Si 1.86807 * 119.99857 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46978 * 89.99444 * 11 9 7 13 13 H 1.48498 * 109.46912 * 209.99919 * 11 9 7 14 14 H 1.48502 * 109.46747 * 329.99567 * 11 9 7 15 15 C 1.53928 * 112.54839 * 217.13514 * 5 4 3 16 16 N 1.48194 * 112.77489 * 318.37708 * 15 5 4 17 17 C 1.44251 * 114.27669 * 318.13628 * 16 15 5 18 18 C 1.54263 * 108.64248 * 93.39097 * 17 16 15 19 19 C 1.46145 * 111.89979 * 281.39536 * 18 17 16 20 20 H 1.08998 * 108.93485 * 300.26040 * 19 18 17 21 21 C 1.52994 * 108.93468 * 181.56399 * 19 18 17 22 22 H 1.08997 * 109.47631 * 59.99586 * 1 2 3 23 23 H 1.09001 * 109.46862 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47107 * 299.99788 * 1 2 3 25 25 H 1.09000 * 109.47107 * 240.00212 * 2 1 3 26 26 H 1.09002 * 109.47295 * 119.99766 * 2 1 3 27 27 H 1.09001 * 109.46734 * 54.73835 * 3 2 1 28 28 H 1.08996 * 109.47012 * 294.73541 * 3 2 1 29 29 H 0.96999 * 120.00274 * 180.02562 * 10 9 7 30 30 H 1.08998 * 108.82786 * 79.22653 * 15 5 4 31 31 H 1.09004 * 108.82152 * 197.52992 * 15 5 4 32 32 H 1.00901 * 111.00112 * 191.67710 * 16 15 5 33 33 H 1.08995 * 109.61230 * 213.13350 * 17 16 15 34 34 H 1.09001 * 109.61138 * 333.64785 * 17 16 15 35 35 H 1.08994 * 108.99520 * 42.01722 * 18 17 16 36 36 H 1.09001 * 108.99632 * 160.85570 * 18 17 16 37 37 H 1.09000 * 109.46906 * 62.95650 * 21 19 18 38 38 H 1.09003 * 109.46793 * 182.95621 * 21 19 18 39 39 H 1.08992 * 109.47223 * 302.95159 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5035 1.4445 0.1272 5 6 3.9188 0.7647 1.3297 6 1 4.1759 -0.2647 1.0801 7 6 2.7710 0.7565 2.3062 8 1 1.8818 1.3333 2.0990 9 6 2.8584 0.0172 3.4667 10 7 3.9432 -0.6812 3.7213 11 14 1.4353 0.0066 4.6768 12 1 0.5044 -1.0992 4.3364 13 1 1.9572 -0.1915 6.0529 14 1 0.7132 1.3021 4.6029 15 6 5.1344 1.4337 1.9961 16 7 6.1605 1.8642 1.0173 17 6 6.4100 0.9125 -0.0376 18 6 5.5167 1.2681 -1.2440 19 6 4.1396 0.8173 -1.0541 20 1 4.1365 -0.2647 -0.9231 21 6 3.3259 1.1685 -2.3013 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6017 1.9828 0.8391 28 1 1.7557 1.9284 -0.9333 29 1 4.0046 -1.2016 4.5376 30 1 4.7938 2.3055 2.5547 31 1 5.5869 0.7274 2.6922 32 1 7.0182 2.1217 1.4822 33 1 7.4583 0.9595 -0.3324 34 1 6.1703 -0.0919 0.3115 35 1 5.5203 2.3493 -1.3815 36 1 5.9234 0.7956 -2.1381 37 1 3.7274 0.6308 -3.1603 38 1 2.2851 0.8833 -2.1482 39 1 3.3855 2.2413 -2.4838 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250054807.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:45 Heat of formation + Delta-G solvation = 22.565068 kcal Electronic energy + Delta-G solvation = -17541.683923 eV Core-core repulsion = 15098.811874 eV Total energy + Delta-G solvation = -2442.872050 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.10992 -35.18253 -33.87104 -32.10425 -31.00981 -27.83973 -27.05884 -25.45357 -23.09465 -22.16759 -21.22814 -19.46288 -18.23362 -16.40481 -15.70331 -15.44869 -14.28801 -14.19451 -13.78153 -13.62850 -13.23963 -12.68339 -12.34027 -12.22167 -11.82721 -11.57169 -11.42944 -11.12992 -10.99937 -10.94225 -10.62817 -10.50797 -10.31001 -10.09151 -10.03518 -9.73199 -9.58666 -9.33127 -8.64138 -8.49642 -7.25309 -6.88660 -6.08500 -4.08261 3.26242 3.33971 3.37038 4.37181 4.94627 5.17243 5.35720 5.55568 5.66829 5.80578 5.84809 5.93482 6.01840 6.13813 6.20452 6.26366 6.29868 6.41294 6.45702 6.58625 6.62622 6.66653 6.75821 6.77113 6.89468 6.91240 7.09926 7.16410 7.42041 7.51361 7.77885 7.84068 7.95903 8.22153 8.38281 8.52490 8.71054 9.03381 9.54172 10.99585 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023805 B = 0.013023 C = 0.009088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.957179 B = 2149.558277 C = 3080.357877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.169 4.169 3 C 0.067 3.933 4 N -0.511 5.511 5 C 0.216 3.784 6 H 0.005 0.995 7 C -0.520 4.520 8 H 0.079 0.921 9 C 0.062 3.938 10 N -0.891 5.891 11 Si 0.889 3.111 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.272 1.272 15 C 0.089 3.911 16 N -0.703 5.703 17 C 0.075 3.925 18 C -0.101 4.101 19 C 0.084 3.916 20 H 0.027 0.973 21 C -0.156 4.156 22 H 0.038 0.962 23 H 0.040 0.960 24 H 0.050 0.950 25 H 0.039 0.961 26 H 0.106 0.894 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.260 0.740 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.321 0.679 33 H 0.047 0.953 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.060 1.642 -7.469 7.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.207 4.207 3 C -0.061 4.061 4 N -0.234 5.234 5 C 0.108 3.892 6 H 0.022 0.978 7 C -0.558 4.558 8 H 0.096 0.904 9 C -0.141 4.141 10 N -0.530 5.530 11 Si 0.717 3.283 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.197 1.197 15 C -0.039 4.039 16 N -0.334 5.334 17 C -0.055 4.055 18 C -0.140 4.140 19 C -0.025 4.025 20 H 0.045 0.955 21 C -0.214 4.214 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.124 0.876 27 H 0.099 0.901 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.138 0.862 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.266 2.331 -7.655 8.007 hybrid contribution -0.436 -1.692 1.257 2.153 sum -0.702 0.639 -6.398 6.468 Atomic orbital electron populations 1.21640 0.97529 1.00193 1.00513 1.22531 0.94715 1.00194 1.03277 1.22194 0.88792 0.95092 0.99973 1.61804 1.05677 1.54292 1.01637 1.18940 0.92793 0.90775 0.86684 0.97751 1.21743 1.01803 1.28267 1.04020 0.90372 1.24992 0.95743 0.95426 0.97891 1.69944 1.26910 1.30264 1.25851 0.86629 0.82587 0.78521 0.80599 1.20715 1.21329 1.19700 1.22445 0.91264 0.98188 0.91994 1.58961 1.12579 1.45621 1.16210 1.21422 0.96723 0.94502 0.92895 1.20612 0.94858 1.02154 0.96404 1.20474 0.94575 0.96019 0.91397 0.95474 1.22215 1.00804 1.01413 0.96928 0.94239 0.94062 0.93046 0.94232 0.87611 0.90107 0.93309 0.92998 0.92817 0.93924 0.86239 0.93477 0.94986 0.91084 0.93400 0.93752 0.91750 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.91 37.16 0.37 -2.01 16 2 C -0.17 -3.31 4.58 -26.73 -0.12 -3.43 16 3 C 0.07 1.35 4.27 -3.82 -0.02 1.33 16 4 N -0.51 -11.02 4.56 -224.50 -1.02 -12.05 16 5 C 0.22 5.28 0.92 -69.80 -0.06 5.22 16 6 H 0.00 0.13 6.49 -51.93 -0.34 -0.20 16 7 C -0.52 -13.38 5.27 -34.44 -0.18 -13.56 16 8 H 0.08 1.99 4.69 -52.49 -0.25 1.75 16 9 C 0.06 1.64 5.32 -17.82 -0.09 1.54 16 10 N -0.89 -24.76 11.90 55.43 0.66 -24.10 16 11 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 15 C 0.09 2.13 5.76 -2.63 -0.02 2.12 16 16 N -0.70 -14.23 6.32 -113.46 -0.72 -14.95 16 17 C 0.08 1.40 6.16 -4.58 -0.03 1.37 16 18 C -0.10 -1.79 4.84 -29.32 -0.14 -1.93 16 19 C 0.08 1.59 1.51 -70.31 -0.11 1.49 16 20 H 0.03 0.57 7.02 -51.93 -0.36 0.21 16 21 C -0.16 -2.49 7.91 37.15 0.29 -2.20 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.04 0.75 6.20 -51.93 -0.32 0.42 16 26 H 0.11 2.49 5.31 -51.93 -0.28 2.21 16 27 H 0.08 1.75 5.71 -51.93 -0.30 1.45 16 28 H 0.05 0.88 5.88 -51.93 -0.31 0.58 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.05 1.36 7.97 -51.93 -0.41 0.95 16 31 H 0.04 1.11 6.95 -51.93 -0.36 0.75 16 32 H 0.32 5.79 8.89 -39.29 -0.35 5.44 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.03 0.67 6.96 -51.93 -0.36 0.31 16 35 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 36 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 1.03 4.69 -51.93 -0.24 0.79 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 280.28 15.07 4.22 4.22 Total: -1.00 -26.91 280.28 -8.38 -35.29 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.39 Total: 5.91 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -0.11 Total: -10.07 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -1.08 Total: -51.10 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -26.91 -8.38 -35.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250054807.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.851 kcal (2) G-P(sol) polarization free energy of solvation -26.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds