Wall clock time and date at job start Mon Mar 30 2020 03:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47121 * 2 1 4 4 N 1.46903 * 109.47039 * 174.73258 * 3 2 1 5 5 C 1.44251 * 111.00204 * 302.10587 * 4 3 2 6 6 H 1.08999 * 108.78698 * 96.39654 * 5 4 3 7 7 C 1.50702 * 108.86922 * 337.92394 * 5 4 3 8 8 H 1.07998 * 119.99826 * 351.44774 * 7 5 4 9 9 C 1.37881 * 119.99965 * 171.72141 * 7 5 4 10 10 N 1.31506 * 120.00201 * 359.97438 * 9 7 5 11 11 Si 1.86807 * 119.99857 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46978 * 89.99444 * 11 9 7 13 13 H 1.48498 * 109.46912 * 209.99919 * 11 9 7 14 14 H 1.48502 * 109.46747 * 329.99567 * 11 9 7 15 15 C 1.53928 * 112.54839 * 217.13514 * 5 4 3 16 16 N 1.48194 * 112.77489 * 318.37708 * 15 5 4 17 17 C 1.44251 * 114.27669 * 318.13628 * 16 15 5 18 18 C 1.54263 * 108.64248 * 93.39097 * 17 16 15 19 19 C 1.46145 * 111.89979 * 281.39536 * 18 17 16 20 20 H 1.08998 * 108.93485 * 300.26040 * 19 18 17 21 21 C 1.52994 * 108.93468 * 181.56399 * 19 18 17 22 22 H 1.08997 * 109.47631 * 59.99586 * 1 2 3 23 23 H 1.09001 * 109.46862 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47107 * 299.99788 * 1 2 3 25 25 H 1.09000 * 109.47107 * 240.00212 * 2 1 3 26 26 H 1.09002 * 109.47295 * 119.99766 * 2 1 3 27 27 H 1.09001 * 109.46734 * 54.73835 * 3 2 1 28 28 H 1.08996 * 109.47012 * 294.73541 * 3 2 1 29 29 H 0.96999 * 120.00274 * 180.02562 * 10 9 7 30 30 H 1.08998 * 108.82786 * 79.22653 * 15 5 4 31 31 H 1.09004 * 108.82152 * 197.52992 * 15 5 4 32 32 H 1.00901 * 111.00112 * 191.67710 * 16 15 5 33 33 H 1.08995 * 109.61230 * 213.13350 * 17 16 15 34 34 H 1.09001 * 109.61138 * 333.64785 * 17 16 15 35 35 H 1.08994 * 108.99520 * 42.01722 * 18 17 16 36 36 H 1.09001 * 108.99632 * 160.85570 * 18 17 16 37 37 H 1.09000 * 109.46906 * 62.95650 * 21 19 18 38 38 H 1.09003 * 109.46793 * 182.95621 * 21 19 18 39 39 H 1.08992 * 109.47223 * 302.95159 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5035 1.4445 0.1272 5 6 3.9188 0.7647 1.3297 6 1 4.1759 -0.2647 1.0801 7 6 2.7710 0.7565 2.3062 8 1 1.8818 1.3333 2.0990 9 6 2.8584 0.0172 3.4667 10 7 3.9432 -0.6812 3.7213 11 14 1.4353 0.0066 4.6768 12 1 0.5044 -1.0992 4.3364 13 1 1.9572 -0.1915 6.0529 14 1 0.7132 1.3021 4.6029 15 6 5.1344 1.4337 1.9961 16 7 6.1605 1.8642 1.0173 17 6 6.4100 0.9125 -0.0376 18 6 5.5167 1.2681 -1.2440 19 6 4.1396 0.8173 -1.0541 20 1 4.1365 -0.2647 -0.9231 21 6 3.3259 1.1685 -2.3013 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6017 1.9828 0.8391 28 1 1.7557 1.9284 -0.9333 29 1 4.0046 -1.2016 4.5376 30 1 4.7938 2.3055 2.5547 31 1 5.5869 0.7274 2.6922 32 1 7.0182 2.1217 1.4822 33 1 7.4583 0.9595 -0.3324 34 1 6.1703 -0.0919 0.3115 35 1 5.5203 2.3493 -1.3815 36 1 5.9234 0.7956 -2.1381 37 1 3.7274 0.6308 -3.1603 38 1 2.2851 0.8833 -2.1482 39 1 3.3855 2.2413 -2.4838 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250054807.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:44 Heat of formation + Delta-G solvation = 3.508480 kcal Electronic energy + Delta-G solvation = -17542.510279 eV Core-core repulsion = 15098.811874 eV Total energy + Delta-G solvation = -2443.698405 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.77264 -36.80914 -35.65727 -33.82501 -32.73828 -29.33768 -28.81782 -27.24187 -24.80566 -23.79598 -22.81431 -21.19205 -19.90587 -18.28668 -17.46019 -17.12265 -16.11924 -15.76800 -15.49621 -15.38527 -14.78977 -14.24625 -14.07887 -13.82816 -13.39132 -13.27044 -13.00338 -12.81626 -12.62077 -12.50245 -12.28914 -12.13250 -11.90684 -11.76470 -11.64683 -11.51950 -11.21393 -10.99472 -10.57756 -10.49893 -8.99557 -8.65306 -8.12481 -6.17243 1.38387 1.40765 1.49609 2.41090 3.16390 3.34232 3.69546 4.08667 4.22495 4.28215 4.38733 4.50830 4.60545 4.69190 4.71848 4.80228 4.84823 4.93025 4.95254 4.97192 5.05726 5.12808 5.14665 5.27521 5.31200 5.36825 5.41518 5.56826 5.64890 5.74959 5.79913 5.93968 6.05993 6.47449 6.53785 6.86242 6.91870 7.06637 7.48720 8.94975 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023805 B = 0.013023 C = 0.009088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.957179 B = 2149.558277 C = 3080.357877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.159 4.159 3 C 0.069 3.931 4 N -0.519 5.519 5 C 0.230 3.770 6 H -0.037 1.037 7 C -0.519 4.519 8 H 0.081 0.919 9 C 0.014 3.986 10 N -0.924 5.924 11 Si 0.946 3.054 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.264 1.264 15 C 0.103 3.897 16 N -0.698 5.698 17 C 0.072 3.928 18 C -0.098 4.098 19 C 0.080 3.920 20 H 0.002 0.998 21 C -0.148 4.148 22 H 0.066 0.934 23 H 0.048 0.952 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.258 0.742 30 H 0.034 0.966 31 H 0.012 0.988 32 H 0.335 0.665 33 H 0.082 0.918 34 H 0.000 1.000 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.741 2.597 -9.391 9.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.198 4.198 3 C -0.059 4.059 4 N -0.242 5.242 5 C 0.122 3.878 6 H -0.020 1.020 7 C -0.558 4.558 8 H 0.099 0.901 9 C -0.185 4.185 10 N -0.564 5.564 11 Si 0.772 3.228 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.188 1.188 15 C -0.026 4.026 16 N -0.329 5.329 17 C -0.058 4.058 18 C -0.137 4.137 19 C -0.028 4.028 20 H 0.020 0.980 21 C -0.205 4.205 22 H 0.085 0.915 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.030 0.970 32 H 0.153 0.847 33 H 0.101 0.899 34 H 0.019 0.981 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.950 3.300 -9.596 10.192 hybrid contribution -0.177 -1.995 1.783 2.681 sum -1.127 1.306 -7.814 8.002 Atomic orbital electron populations 1.21594 0.95130 1.01104 1.01536 1.22322 0.96804 0.99394 1.01310 1.22205 0.87859 0.95263 1.00548 1.61809 1.06861 1.53968 1.01605 1.18641 0.92586 0.88778 0.87838 1.01984 1.22014 1.02197 1.27501 1.04084 0.90123 1.25683 0.97798 0.95399 0.99622 1.70084 1.28698 1.31373 1.26245 0.85727 0.79976 0.78745 0.78363 1.20368 1.21516 1.18835 1.22075 0.92107 0.96240 0.92172 1.58917 1.12651 1.45658 1.15674 1.21558 0.99209 0.92320 0.92690 1.20617 0.93773 1.02335 0.96955 1.20601 0.96104 0.94383 0.91729 0.98035 1.22131 1.00193 1.02295 0.95860 0.91464 0.93273 0.93720 0.93630 0.92084 0.91966 0.90427 0.93333 0.94726 0.96978 0.84730 0.89938 0.98136 0.90982 0.90141 0.91238 0.91834 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 9.91 71.98 0.71 -3.62 16 2 C -0.16 -6.19 4.58 30.59 0.14 -6.05 16 3 C 0.07 2.69 4.27 86.30 0.37 3.06 16 4 N -0.52 -22.29 4.56 -864.18 -3.94 -26.23 16 5 C 0.23 11.63 0.92 44.98 0.04 11.68 16 6 H -0.04 -2.18 6.49 -2.39 -0.02 -2.19 16 7 C -0.52 -27.51 5.27 25.60 0.13 -27.37 16 8 H 0.08 4.17 4.69 -2.91 -0.01 4.16 16 9 C 0.01 0.75 5.32 84.66 0.45 1.20 16 10 N -0.92 -53.54 11.90 21.45 0.26 -53.29 16 11 Si 0.95 43.41 29.54 68.60 2.03 45.44 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 14 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 15 C 0.10 5.11 5.76 86.37 0.50 5.61 16 16 N -0.70 -28.07 6.32 -512.86 -3.24 -31.31 16 17 C 0.07 2.63 6.16 87.23 0.54 3.17 16 18 C -0.10 -3.24 4.84 28.91 0.14 -3.10 16 19 C 0.08 2.93 1.51 42.57 0.06 3.00 16 20 H 0.00 0.07 7.02 -2.39 -0.02 0.05 16 21 C -0.15 -4.21 7.91 71.98 0.57 -3.65 16 22 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.05 1.68 6.20 -2.39 -0.01 1.67 16 26 H 0.06 2.95 5.31 -2.39 -0.01 2.94 16 27 H 0.06 2.66 5.71 -2.39 -0.01 2.64 16 28 H 0.08 2.60 5.88 -2.39 -0.01 2.58 16 29 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.03 1.80 7.97 -2.39 -0.02 1.79 16 31 H 0.01 0.66 6.95 -2.38 -0.02 0.65 16 32 H 0.34 11.86 8.89 -89.69 -0.80 11.06 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.00 0.01 6.96 -2.39 -0.02 -0.01 16 35 H 0.07 2.41 8.12 -2.39 -0.02 2.39 16 36 H 0.08 2.15 8.13 -2.39 -0.02 2.13 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.06 1.82 4.69 -2.39 -0.01 1.81 16 39 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -60.08 280.28 -1.01 -61.09 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.23 Total: 20.37 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 3.66 Total: -16.08 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -6.93 Total: -110.83 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -60.08 -1.01 -61.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250054807.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.600 kcal (2) G-P(sol) polarization free energy of solvation -60.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds