Wall clock time and date at job start Mon Mar 30 2020 03:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47351 * 2 1 4 4 H 1.09000 * 109.46656 * 301.43152 * 3 2 1 5 5 C 1.50696 * 109.47433 * 181.43237 * 3 2 1 6 6 H 1.08005 * 119.99683 * 245.46536 * 5 3 2 7 7 C 1.37871 * 120.00596 * 65.46744 * 5 3 2 8 8 N 1.31514 * 120.00419 * 192.63830 * 7 5 3 9 9 Si 1.86804 * 119.99652 * 12.63722 * 7 5 3 10 10 H 1.48502 * 109.47044 * 88.20263 * 9 7 5 11 11 H 1.48496 * 109.47297 * 208.20459 * 9 7 5 12 12 H 1.48499 * 109.47081 * 328.20438 * 9 7 5 13 13 N 1.46902 * 109.46961 * 61.42924 * 3 2 1 14 14 C 1.47439 * 111.00005 * 185.30911 * 13 3 2 15 15 C 1.54314 * 107.23289 * 236.74025 * 14 13 3 16 16 H 1.09006 * 110.70705 * 96.09422 * 15 14 13 17 17 C 1.52994 * 110.85926 * 219.26244 * 15 14 13 18 18 N 1.46903 * 109.47373 * 288.68703 * 17 15 14 19 19 C 1.55142 * 103.01994 * 337.71809 * 15 14 13 20 20 C 1.47845 * 111.00148 * 64.46036 * 13 3 2 21 21 H 1.09006 * 110.36757 * 27.42653 * 20 13 3 22 22 C 1.53002 * 110.37545 * 265.19569 * 20 13 3 23 23 H 1.09001 * 109.47171 * 185.01825 * 1 2 3 24 24 H 1.08996 * 109.47024 * 305.02193 * 1 2 3 25 25 H 1.08998 * 109.46956 * 65.02112 * 1 2 3 26 26 H 1.09001 * 109.47639 * 240.00177 * 2 1 3 27 27 H 1.09005 * 109.47537 * 119.99825 * 2 1 3 28 28 H 0.97000 * 119.99566 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.88859 * 356.14764 * 14 13 3 30 30 H 1.09001 * 109.89519 * 117.33434 * 14 13 3 31 31 H 1.08999 * 109.47207 * 48.68435 * 17 15 14 32 32 H 1.09001 * 109.47685 * 168.68872 * 17 15 14 33 33 H 1.00896 * 110.99708 * 56.04154 * 18 17 15 34 34 H 1.00904 * 111.00184 * 179.97438 * 18 17 15 35 35 H 1.09003 * 110.98601 * 277.56154 * 19 15 14 36 36 H 1.09002 * 110.99292 * 153.74253 * 19 15 14 37 37 H 1.08991 * 109.46852 * 65.57207 * 22 20 13 38 38 H 1.08997 * 109.46733 * 185.57604 * 22 20 13 39 39 H 1.08997 * 109.47021 * 305.57222 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6559 1.9636 -0.8769 5 6 3.5466 1.4427 -0.0355 6 1 4.1065 1.8241 0.8057 7 6 4.2102 0.9561 -1.1417 8 7 5.5033 0.7231 -1.0831 9 14 3.2727 0.6278 -2.7237 10 1 3.2423 1.8635 -3.5466 11 1 3.9469 -0.4560 -3.4828 12 1 1.8837 0.2147 -2.3993 13 7 1.5788 2.1250 1.2164 14 6 1.9442 3.5531 1.1918 15 6 2.7778 3.8337 2.4597 16 1 3.8441 3.7817 2.2393 17 6 2.4169 5.1944 3.0589 18 7 2.9311 6.2631 2.1920 19 6 2.3586 2.6852 3.4148 20 6 2.1671 1.5092 2.4249 21 1 3.1271 1.0503 2.1879 22 6 1.2110 0.4689 3.0120 23 1 -0.3633 -1.0237 0.0899 24 1 -0.3633 0.5897 0.8416 25 1 -0.3633 0.4340 -0.9315 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 5.9700 0.3804 -1.8614 29 1 2.5371 3.7690 0.3029 30 1 1.0432 4.1667 1.1971 31 1 1.3332 5.2806 3.1381 32 1 2.8620 5.2847 4.0498 33 1 2.5833 6.1634 1.2502 34 1 2.7050 7.1725 2.5663 35 1 1.4247 2.9225 3.9244 36 1 3.1489 2.4663 4.1329 37 1 1.1002 -0.3588 2.3116 38 1 1.6134 0.0965 3.9540 39 1 0.2384 0.9282 3.1886 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251293352.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:26 Heat of formation + Delta-G solvation = -1.516511 kcal Electronic energy + Delta-G solvation = -17145.905308 eV Core-core repulsion = 14701.989003 eV Total energy + Delta-G solvation = -2443.916305 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.03458 -35.42410 -33.29951 -31.93068 -30.72491 -29.44615 -26.83076 -25.00559 -23.77992 -22.25947 -20.55756 -19.68942 -18.59717 -16.69547 -15.84872 -15.53955 -14.94239 -14.32948 -13.93457 -13.41884 -13.02131 -12.73436 -12.57619 -12.34371 -12.22721 -12.03789 -11.77611 -11.34862 -11.05416 -10.84823 -10.77376 -10.54195 -10.22303 -10.07659 -10.00759 -9.84483 -9.50251 -9.39531 -9.02872 -8.51499 -8.47578 -7.12810 -6.10450 -4.06939 3.28468 3.37965 3.41115 4.42056 4.73577 4.95611 5.19645 5.24009 5.26635 5.53001 5.75847 5.85105 6.00784 6.07897 6.11103 6.14293 6.16418 6.21912 6.34391 6.39472 6.43213 6.52729 6.63986 6.76416 6.79509 6.80892 6.92029 7.06186 7.10932 7.28235 7.31957 7.40434 7.59249 7.64274 8.13348 8.23812 8.48745 8.95887 9.56082 11.02255 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023293 B = 0.010929 C = 0.008917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.773583 B = 2561.463691 C = 3139.427229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C 0.180 3.820 4 H 0.030 0.970 5 C -0.545 4.545 6 H 0.077 0.923 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.859 3.141 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.246 1.246 13 N -0.516 5.516 14 C 0.058 3.942 15 C -0.105 4.105 16 H 0.085 0.915 17 C 0.075 3.925 18 N -0.851 5.851 19 C -0.118 4.118 20 C 0.067 3.933 21 H 0.081 0.919 22 C -0.138 4.138 23 H 0.030 0.970 24 H 0.064 0.936 25 H 0.037 0.963 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.262 0.738 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.023 0.977 32 H 0.064 0.936 33 H 0.343 0.657 34 H 0.334 0.666 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.595 4.324 6.362 11.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C 0.072 3.928 4 H 0.047 0.953 5 C -0.583 4.583 6 H 0.095 0.905 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.686 3.314 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.170 1.170 13 N -0.239 5.239 14 C -0.071 4.071 15 C -0.125 4.125 16 H 0.103 0.897 17 C -0.056 4.056 18 N -0.380 5.380 19 C -0.156 4.156 20 C -0.041 4.041 21 H 0.099 0.901 22 C -0.196 4.196 23 H 0.049 0.951 24 H 0.083 0.917 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.156 0.844 34 H 0.145 0.855 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.267 3.887 6.425 11.168 hybrid contribution -0.339 0.159 -1.189 1.246 sum -8.605 4.046 5.236 10.855 Atomic orbital electron populations 1.21792 0.97926 0.99228 1.01314 1.22110 0.93541 0.99231 1.01245 1.19738 0.93905 0.90640 0.88545 0.95261 1.21609 0.90228 1.42466 1.04013 0.90485 1.24937 0.94588 0.94234 0.98709 1.69975 1.08856 1.44158 1.30032 0.87326 0.81859 0.78074 0.84107 1.20736 1.21642 1.16999 1.63739 1.56169 1.01121 1.02891 1.22606 0.96399 0.90667 0.97406 1.22395 1.01418 0.92761 0.95923 0.89692 1.21764 0.96220 0.91276 0.96296 1.58709 1.67760 1.05147 1.06410 1.22735 1.00211 0.95385 0.97312 1.22513 0.98055 0.94093 0.89487 0.90148 1.21944 0.99008 0.99186 0.99455 0.95106 0.91737 0.94429 0.92727 0.92150 0.92793 0.91775 0.93253 0.95831 0.91703 0.84434 0.85493 0.91914 0.91997 0.91728 0.93879 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.12 37.16 0.34 -2.32 16 2 C -0.12 -2.65 4.21 -26.73 -0.11 -2.76 16 3 C 0.18 4.12 1.16 -68.86 -0.08 4.04 16 4 H 0.03 0.71 6.88 -51.93 -0.36 0.35 16 5 C -0.54 -14.57 6.96 -34.44 -0.24 -14.81 16 6 H 0.08 2.26 6.74 -52.48 -0.35 1.90 16 7 C 0.08 2.20 5.38 -17.82 -0.10 2.10 16 8 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 9 Si 0.86 20.96 25.86 -169.99 -4.40 16.56 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.25 -5.64 5.25 56.52 0.30 -5.34 16 13 N -0.52 -10.34 4.06 -216.85 -0.88 -11.22 16 14 C 0.06 1.08 5.38 -2.84 -0.02 1.07 16 15 C -0.11 -1.79 3.15 -88.80 -0.28 -2.07 16 16 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 17 C 0.08 1.05 6.18 -3.83 -0.02 1.03 16 18 N -0.85 -11.37 9.62 -10.37 -0.10 -11.47 16 19 C -0.12 -1.92 5.94 -24.59 -0.15 -2.06 16 20 C 0.07 1.26 2.11 -66.19 -0.14 1.12 16 21 H 0.08 1.82 5.86 -51.93 -0.30 1.51 16 22 C -0.14 -2.28 8.34 37.16 0.31 -1.97 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 1.15 6.62 -51.93 -0.34 0.81 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 1.24 4.61 -51.93 -0.24 1.01 16 27 H 0.06 1.29 5.32 -51.93 -0.28 1.02 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 29 H 0.06 1.36 7.07 -51.93 -0.37 0.99 16 30 H 0.05 0.85 7.70 -51.93 -0.40 0.45 16 31 H 0.02 0.31 7.94 -51.93 -0.41 -0.10 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.34 4.57 8.42 -39.29 -0.33 4.24 16 34 H 0.33 3.56 9.08 -39.29 -0.36 3.20 16 35 H 0.06 0.93 7.96 -51.93 -0.41 0.52 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.11 4.73 -51.93 -0.25 0.86 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 285.14 15.07 4.30 4.30 Total: -1.00 -28.69 285.14 -7.39 -36.08 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.60 Total: 8.46 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -0.48 Total: -16.64 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.21 Total: -48.75 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.40 Total: 16.56 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.69 -7.39 -36.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251293352.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.561 kcal (2) G-P(sol) polarization free energy of solvation -28.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds