Wall clock time and date at job start Mon Mar 30 2020 03:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47351 * 2 1 4 4 H 1.09000 * 109.46656 * 301.43152 * 3 2 1 5 5 C 1.50696 * 109.47433 * 181.43237 * 3 2 1 6 6 H 1.08005 * 119.99683 * 245.46536 * 5 3 2 7 7 C 1.37871 * 120.00596 * 65.46744 * 5 3 2 8 8 N 1.31514 * 120.00419 * 192.63830 * 7 5 3 9 9 Si 1.86804 * 119.99652 * 12.63722 * 7 5 3 10 10 H 1.48502 * 109.47044 * 88.20263 * 9 7 5 11 11 H 1.48496 * 109.47297 * 208.20459 * 9 7 5 12 12 H 1.48499 * 109.47081 * 328.20438 * 9 7 5 13 13 N 1.46902 * 109.46961 * 61.42924 * 3 2 1 14 14 C 1.47439 * 111.00005 * 185.30911 * 13 3 2 15 15 C 1.54314 * 107.23289 * 236.74025 * 14 13 3 16 16 H 1.09006 * 110.70705 * 96.09422 * 15 14 13 17 17 C 1.52994 * 110.85926 * 219.26244 * 15 14 13 18 18 N 1.46903 * 109.47373 * 288.68703 * 17 15 14 19 19 C 1.55142 * 103.01994 * 337.71809 * 15 14 13 20 20 C 1.47845 * 111.00148 * 64.46036 * 13 3 2 21 21 H 1.09006 * 110.36757 * 27.42653 * 20 13 3 22 22 C 1.53002 * 110.37545 * 265.19569 * 20 13 3 23 23 H 1.09001 * 109.47171 * 185.01825 * 1 2 3 24 24 H 1.08996 * 109.47024 * 305.02193 * 1 2 3 25 25 H 1.08998 * 109.46956 * 65.02112 * 1 2 3 26 26 H 1.09001 * 109.47639 * 240.00177 * 2 1 3 27 27 H 1.09005 * 109.47537 * 119.99825 * 2 1 3 28 28 H 0.97000 * 119.99566 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.88859 * 356.14764 * 14 13 3 30 30 H 1.09001 * 109.89519 * 117.33434 * 14 13 3 31 31 H 1.08999 * 109.47207 * 48.68435 * 17 15 14 32 32 H 1.09001 * 109.47685 * 168.68872 * 17 15 14 33 33 H 1.00896 * 110.99708 * 56.04154 * 18 17 15 34 34 H 1.00904 * 111.00184 * 179.97438 * 18 17 15 35 35 H 1.09003 * 110.98601 * 277.56154 * 19 15 14 36 36 H 1.09002 * 110.99292 * 153.74253 * 19 15 14 37 37 H 1.08991 * 109.46852 * 65.57207 * 22 20 13 38 38 H 1.08997 * 109.46733 * 185.57604 * 22 20 13 39 39 H 1.08997 * 109.47021 * 305.57222 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6559 1.9636 -0.8769 5 6 3.5466 1.4427 -0.0355 6 1 4.1065 1.8241 0.8057 7 6 4.2102 0.9561 -1.1417 8 7 5.5033 0.7231 -1.0831 9 14 3.2727 0.6278 -2.7237 10 1 3.2423 1.8635 -3.5466 11 1 3.9469 -0.4560 -3.4828 12 1 1.8837 0.2147 -2.3993 13 7 1.5788 2.1250 1.2164 14 6 1.9442 3.5531 1.1918 15 6 2.7778 3.8337 2.4597 16 1 3.8441 3.7817 2.2393 17 6 2.4169 5.1944 3.0589 18 7 2.9311 6.2631 2.1920 19 6 2.3586 2.6852 3.4148 20 6 2.1671 1.5092 2.4249 21 1 3.1271 1.0503 2.1879 22 6 1.2110 0.4689 3.0120 23 1 -0.3633 -1.0237 0.0899 24 1 -0.3633 0.5897 0.8416 25 1 -0.3633 0.4340 -0.9315 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 5.9700 0.3804 -1.8614 29 1 2.5371 3.7690 0.3029 30 1 1.0432 4.1667 1.1971 31 1 1.3332 5.2806 3.1381 32 1 2.8620 5.2847 4.0498 33 1 2.5833 6.1634 1.2502 34 1 2.7050 7.1725 2.5663 35 1 1.4247 2.9225 3.9244 36 1 3.1489 2.4663 4.1329 37 1 1.1002 -0.3588 2.3116 38 1 1.6134 0.0965 3.9540 39 1 0.2384 0.9282 3.1886 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251293352.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:26 Heat of formation + Delta-G solvation = -22.944088 kcal Electronic energy + Delta-G solvation = -17146.834478 eV Core-core repulsion = 14701.989003 eV Total energy + Delta-G solvation = -2444.845475 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.59267 -36.89231 -34.86996 -33.85707 -32.23861 -30.84373 -28.69380 -26.36834 -25.29216 -23.91655 -22.16716 -21.19886 -20.26837 -18.62378 -17.27902 -17.13083 -16.34754 -16.06180 -15.38721 -14.87928 -14.75614 -14.32958 -13.99952 -13.94670 -13.79396 -13.54677 -13.27552 -12.90243 -12.74671 -12.52286 -12.35519 -12.10429 -11.89067 -11.59621 -11.47879 -11.46739 -11.31817 -11.06097 -10.84119 -10.60235 -9.56242 -8.86351 -8.29452 -6.28368 1.32072 1.36245 1.45306 2.34966 3.06468 3.40033 3.60787 3.88704 3.90665 4.19196 4.42400 4.51154 4.53289 4.58646 4.69981 4.75386 4.77170 4.80217 4.88393 4.98591 5.02183 5.07701 5.11159 5.23652 5.25330 5.29039 5.38138 5.51666 5.56690 5.63405 5.64816 5.81452 6.21876 6.27452 6.47125 6.52528 6.65183 6.80683 7.37936 8.86921 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.023293 B = 0.010929 C = 0.008917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.773583 B = 2561.463691 C = 3139.427229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.123 4.123 3 C 0.184 3.816 4 H 0.022 0.978 5 C -0.532 4.532 6 H 0.036 0.964 7 C 0.019 3.981 8 N -0.945 5.945 9 Si 0.919 3.081 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.219 1.219 13 N -0.507 5.507 14 C 0.057 3.943 15 C -0.100 4.100 16 H 0.041 0.959 17 C 0.085 3.915 18 N -0.864 5.864 19 C -0.108 4.108 20 C 0.062 3.938 21 H 0.032 0.968 22 C -0.130 4.130 23 H 0.053 0.947 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.262 0.738 29 H 0.029 0.971 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.342 0.658 34 H 0.351 0.649 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.636 4.683 7.200 14.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C 0.075 3.925 4 H 0.040 0.960 5 C -0.571 4.571 6 H 0.054 0.946 7 C -0.179 4.179 8 N -0.585 5.585 9 Si 0.744 3.256 10 H -0.207 1.207 11 H -0.219 1.219 12 H -0.141 1.141 13 N -0.230 5.230 14 C -0.071 4.071 15 C -0.120 4.120 16 H 0.060 0.940 17 C -0.046 4.046 18 N -0.395 5.395 19 C -0.146 4.146 20 C -0.046 4.046 21 H 0.050 0.950 22 C -0.188 4.188 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.155 0.845 34 H 0.165 0.835 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.336 4.264 7.285 14.134 hybrid contribution 0.686 0.101 -1.357 1.524 sum -10.650 4.366 5.928 12.947 Atomic orbital electron populations 1.21687 0.94774 1.00975 1.01792 1.22016 0.96256 0.97399 1.00377 1.19625 0.90926 0.92165 0.89762 0.95986 1.21851 0.92525 1.40444 1.02264 0.94572 1.25761 0.95325 0.94618 1.02214 1.70123 1.10843 1.46564 1.30985 0.86360 0.81870 0.77743 0.79662 1.20677 1.21856 1.14132 1.63845 1.55401 1.01576 1.02179 1.22651 0.97216 0.90402 0.96829 1.22276 0.98523 0.95512 0.95718 0.94025 1.21653 0.97405 0.89230 0.96331 1.58662 1.68215 1.06148 1.06500 1.22708 1.01772 0.93531 0.96636 1.22529 0.96512 0.95637 0.89946 0.95031 1.21864 0.99110 0.97999 0.99814 0.92785 0.91032 0.94113 0.94176 0.92604 0.92946 0.95222 0.90578 0.93835 0.90596 0.84547 0.83527 0.89001 0.91388 0.92625 0.92069 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.12 71.98 0.66 -3.85 16 2 C -0.12 -5.11 4.21 30.60 0.13 -4.98 16 3 C 0.18 8.42 1.16 44.17 0.05 8.48 16 4 H 0.02 1.05 6.88 -2.39 -0.02 1.04 16 5 C -0.53 -29.67 6.96 25.60 0.18 -29.49 16 6 H 0.04 2.27 6.74 -2.91 -0.02 2.25 16 7 C 0.02 1.09 5.38 84.65 0.46 1.54 16 8 N -0.95 -59.50 13.96 21.44 0.30 -59.20 16 9 Si 0.92 43.90 25.86 68.60 1.77 45.68 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 11 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 12 H -0.22 -9.41 5.25 99.48 0.52 -8.89 16 13 N -0.51 -19.88 4.06 -839.99 -3.41 -23.28 16 14 C 0.06 2.12 5.38 86.65 0.47 2.59 16 15 C -0.10 -3.38 3.15 -9.62 -0.03 -3.41 16 16 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 17 C 0.08 2.17 6.18 86.30 0.53 2.70 16 18 N -0.86 -21.87 9.62 -186.72 -1.80 -23.66 16 19 C -0.11 -3.34 5.94 31.98 0.19 -3.15 16 20 C 0.06 2.32 2.11 45.39 0.10 2.41 16 21 H 0.03 1.49 5.86 -2.38 -0.01 1.48 16 22 C -0.13 -3.97 8.34 71.98 0.60 -3.37 16 23 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.07 2.29 6.62 -2.39 -0.02 2.27 16 25 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.04 1.77 4.61 -2.39 -0.01 1.76 16 27 H 0.06 2.36 5.32 -2.38 -0.01 2.35 16 28 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.03 1.29 7.07 -2.39 -0.02 1.27 16 30 H 0.08 2.42 7.70 -2.39 -0.02 2.40 16 31 H 0.04 0.97 7.94 -2.39 -0.02 0.95 16 32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.34 8.79 8.42 -89.70 -0.76 8.03 16 34 H 0.35 6.74 9.08 -89.69 -0.81 5.92 16 35 H 0.09 2.36 7.96 -2.39 -0.02 2.34 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.05 1.79 4.73 -2.39 -0.01 1.78 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -64.80 285.14 -0.52 -65.32 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: -0.71 Total: 25.68 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: 3.33 Total: -30.53 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -4.91 Total: -106.15 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.77 Total: 45.68 kcal Total: -64.80 -0.52 -65.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251293352.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.376 kcal (2) G-P(sol) polarization free energy of solvation -64.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds