Wall clock time and date at job start Mon Mar 30 2020 03:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47113 * 2 1 4 4 H 1.09000 * 109.47374 * 305.64985 * 3 2 1 5 5 C 1.50696 * 109.47304 * 185.64760 * 3 2 1 6 6 H 1.07999 * 120.00078 * 245.43313 * 5 3 2 7 7 C 1.37875 * 120.00114 * 65.70961 * 5 3 2 8 8 N 1.31517 * 119.99896 * 359.72351 * 7 5 3 9 9 Si 1.86798 * 120.00223 * 179.72559 * 7 5 3 10 10 H 1.48503 * 109.47148 * 90.00063 * 9 7 5 11 11 H 1.48507 * 109.47324 * 209.99994 * 9 7 5 12 12 H 1.48501 * 109.47116 * 329.99956 * 9 7 5 13 13 N 1.46897 * 109.47062 * 65.64645 * 3 2 1 14 14 C 1.46897 * 111.00241 * 38.71447 * 13 3 2 15 15 C 1.53004 * 109.47372 * 67.73252 * 14 13 3 16 16 C 1.46897 * 111.00134 * 274.75864 * 13 3 2 17 17 H 1.09004 * 110.62906 * 64.67792 * 16 13 3 18 18 C 1.55148 * 110.70816 * 187.97210 * 16 13 3 19 19 C 1.54907 * 101.65255 * 154.03611 * 18 16 13 20 20 N 1.47844 * 104.79604 * 322.93090 * 19 18 16 21 21 C 1.47438 * 108.56748 * 24.09687 * 20 19 18 22 22 H 1.09000 * 109.47430 * 44.55043 * 1 2 3 23 23 H 1.09005 * 109.46925 * 164.55168 * 1 2 3 24 24 H 1.08998 * 109.47043 * 284.54823 * 1 2 3 25 25 H 1.08998 * 109.47079 * 240.00580 * 2 1 3 26 26 H 1.08998 * 109.47203 * 119.99981 * 2 1 3 27 27 H 0.96997 * 120.00096 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.47406 * 187.73340 * 14 13 3 29 29 H 1.09004 * 109.46889 * 307.73837 * 14 13 3 30 30 H 1.08998 * 109.47333 * 172.46584 * 15 14 13 31 31 H 1.09003 * 109.46711 * 292.46933 * 15 14 13 32 32 H 1.09008 * 109.47043 * 52.46311 * 15 14 13 33 33 H 1.08998 * 110.98985 * 272.12857 * 18 16 13 34 34 H 1.09004 * 110.98640 * 35.94691 * 18 16 13 35 35 H 1.08999 * 110.37330 * 204.10598 * 19 18 16 36 36 H 1.08999 * 110.46741 * 81.81218 * 19 18 16 37 37 H 1.00905 * 110.99855 * 146.36324 * 20 19 18 38 38 H 1.08996 * 109.89243 * 239.59760 * 21 20 19 39 39 H 1.09004 * 110.02590 * 118.48677 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 3.5405 1.4449 -0.1398 6 1 4.1576 1.8064 0.6693 7 6 4.1252 0.9907 -1.3029 8 7 3.3736 0.5504 -2.2883 9 14 5.9848 1.0008 -1.4792 10 1 6.5352 -0.2896 -0.9921 11 1 6.3457 1.1850 -2.9079 12 1 6.5520 2.1149 -0.6778 13 7 1.6648 2.0945 1.2617 14 6 1.7920 1.1656 2.3926 15 6 3.2692 0.8381 2.6199 16 6 0.3059 2.6473 1.1849 17 1 -0.4270 1.8494 1.0652 18 6 -0.0097 3.5036 2.4396 19 6 -1.0808 4.4792 1.8912 20 7 -0.6476 4.7776 0.5095 21 6 0.1959 3.6667 0.0317 22 1 -0.3634 0.7323 -0.7209 23 1 -0.3633 -0.9906 -0.2738 24 1 -0.3633 0.2581 0.9947 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7849 0.2312 -3.1067 28 1 1.3799 1.6270 3.2900 29 1 1.2462 0.2481 2.1723 30 1 3.3760 0.2585 3.5368 31 1 3.6466 0.2583 1.7774 32 1 3.8375 1.7642 2.7071 33 1 -0.4169 2.8869 3.2408 34 1 0.8750 4.0441 2.7760 35 1 -1.1037 5.3916 2.4870 36 1 -2.0621 4.0047 1.8871 37 1 -1.4423 4.9149 -0.0970 38 1 1.1864 4.0391 -0.2299 39 1 -0.2641 3.1956 -0.8370 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251295238.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:00 Heat of formation + Delta-G solvation = 15.897212 kcal Electronic energy + Delta-G solvation = -17291.311660 eV Core-core repulsion = 14848.150470 eV Total energy + Delta-G solvation = -2443.161190 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.07491 -36.45020 -32.65952 -31.11768 -30.14120 -29.08802 -27.44827 -25.91092 -22.96472 -21.96302 -20.55280 -19.90975 -18.51875 -16.60217 -16.26577 -15.77156 -14.88210 -14.29717 -13.73733 -13.38722 -12.88041 -12.47101 -12.36620 -12.20572 -12.11260 -11.44821 -11.36336 -11.26244 -11.02381 -10.96276 -10.78923 -10.70273 -10.43301 -10.35006 -10.18768 -9.98646 -9.54458 -9.34340 -8.77665 -8.28606 -8.10570 -7.02316 -5.96253 -3.95899 3.33713 3.41044 3.45443 4.43961 4.57011 4.93497 5.12042 5.25128 5.34942 5.51051 5.74009 5.83625 5.94053 6.00281 6.06332 6.12289 6.16117 6.25112 6.28527 6.35538 6.39133 6.57289 6.59007 6.72371 6.80156 6.90386 7.00573 7.19481 7.25327 7.30459 7.53125 7.64984 7.70989 7.93425 8.25876 8.42504 8.66084 9.10057 9.66673 11.11703 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028867 B = 0.009188 C = 0.008868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.724543 B = 3046.757133 C = 3156.641019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.152 4.152 3 C 0.214 3.786 4 H 0.043 0.957 5 C -0.490 4.490 6 H 0.069 0.931 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.517 5.517 14 C 0.054 3.946 15 C -0.146 4.146 16 C 0.052 3.948 17 H 0.051 0.949 18 C -0.122 4.122 19 C 0.047 3.953 20 N -0.684 5.684 21 C 0.057 3.943 22 H 0.044 0.956 23 H 0.033 0.967 24 H 0.039 0.961 25 H 0.087 0.913 26 H 0.047 0.953 27 H 0.258 0.742 28 H 0.046 0.954 29 H 0.034 0.966 30 H 0.029 0.971 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.331 0.669 38 H 0.092 0.908 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.229 2.172 6.756 10.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.191 4.191 3 C 0.108 3.892 4 H 0.061 0.939 5 C -0.529 4.529 6 H 0.087 0.913 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.719 3.281 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.241 5.241 14 C -0.074 4.074 15 C -0.203 4.203 16 C -0.058 4.058 17 H 0.069 0.931 18 C -0.160 4.160 19 C -0.083 4.083 20 N -0.313 5.313 21 C -0.072 4.072 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.105 0.895 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.146 0.854 38 H 0.110 0.890 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.331 2.928 6.820 9.755 hybrid contribution -0.321 -1.496 -0.556 1.629 sum -6.652 1.432 6.263 9.248 Atomic orbital electron populations 1.22110 0.99743 0.99643 0.99339 1.22264 0.91525 1.02772 1.02570 1.19411 0.95819 0.88389 0.85624 0.93910 1.21306 0.91016 1.40100 1.00450 0.91261 1.24947 0.97804 0.95922 0.95863 1.69920 1.34624 1.43566 1.05499 0.86612 0.86138 0.78261 0.77093 1.20970 1.21493 1.19863 1.62520 1.19901 1.36075 1.05643 1.21993 0.97455 0.94743 0.93210 1.21984 0.96245 1.01525 1.00544 1.23078 0.92571 0.95808 0.94329 0.93134 1.22761 0.98830 0.97142 0.97284 1.22767 0.96368 0.98443 0.90710 1.61927 1.22884 1.43440 1.03006 1.22657 0.99111 0.89708 0.95743 0.93735 0.94794 0.94241 0.89460 0.93434 0.93194 0.93583 0.94789 0.95196 0.89709 0.92644 0.92031 0.89951 0.90969 0.94750 0.85444 0.88990 0.93717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.13 37.16 0.30 -2.62 16 2 C -0.15 -3.44 4.66 -26.73 -0.12 -3.56 16 3 C 0.21 5.07 1.52 -68.87 -0.10 4.96 16 4 H 0.04 1.13 6.21 -51.93 -0.32 0.80 16 5 C -0.49 -12.85 6.54 -34.44 -0.23 -13.07 16 6 H 0.07 1.83 5.88 -52.49 -0.31 1.52 16 7 C 0.06 1.49 5.30 -17.82 -0.09 1.39 16 8 N -0.90 -25.07 11.73 55.43 0.65 -24.42 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.52 -10.65 4.24 -217.93 -0.92 -11.57 16 14 C 0.05 1.02 4.87 -3.82 -0.02 1.00 16 15 C -0.15 -2.78 8.30 37.16 0.31 -2.48 16 16 C 0.05 0.94 2.11 -65.89 -0.14 0.80 16 17 H 0.05 0.92 4.48 -51.93 -0.23 0.69 16 18 C -0.12 -1.87 5.54 -24.59 -0.14 -2.01 16 19 C 0.05 0.64 7.57 -2.30 -0.02 0.62 16 20 N -0.68 -10.53 7.39 -110.80 -0.82 -11.35 16 21 C 0.06 1.03 5.79 -2.84 -0.02 1.01 16 22 H 0.04 0.87 7.77 -51.93 -0.40 0.47 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.04 0.71 5.08 -51.93 -0.26 0.44 16 25 H 0.09 2.25 6.42 -51.93 -0.33 1.92 16 26 H 0.05 1.06 5.04 -51.93 -0.26 0.79 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.05 0.78 6.75 -51.93 -0.35 0.43 16 29 H 0.03 0.65 4.55 -51.93 -0.24 0.41 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 1.84 5.27 -51.93 -0.27 1.57 16 32 H 0.05 1.09 7.63 -51.92 -0.40 0.70 16 33 H 0.06 0.85 7.83 -51.93 -0.41 0.44 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.33 4.37 8.91 -39.29 -0.35 4.02 16 38 H 0.09 1.95 7.74 -51.93 -0.40 1.55 16 39 H 0.04 0.81 8.03 -51.93 -0.42 0.39 16 LS Contribution 281.17 15.07 4.24 4.24 Total: -1.00 -26.96 281.17 -8.35 -35.31 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.21 Total: 5.57 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -0.27 Total: -13.96 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -1.09 Total: -47.34 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -26.96 -8.35 -35.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251295238.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.209 kcal (2) G-P(sol) polarization free energy of solvation -26.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds