Wall clock time and date at job start Mon Mar 30 2020 03:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47113 * 2 1 4 4 H 1.09000 * 109.47374 * 305.64985 * 3 2 1 5 5 C 1.50696 * 109.47304 * 185.64760 * 3 2 1 6 6 H 1.07999 * 120.00078 * 245.43313 * 5 3 2 7 7 C 1.37875 * 120.00114 * 65.70961 * 5 3 2 8 8 N 1.31517 * 119.99896 * 359.72351 * 7 5 3 9 9 Si 1.86798 * 120.00223 * 179.72559 * 7 5 3 10 10 H 1.48503 * 109.47148 * 90.00063 * 9 7 5 11 11 H 1.48507 * 109.47324 * 209.99994 * 9 7 5 12 12 H 1.48501 * 109.47116 * 329.99956 * 9 7 5 13 13 N 1.46897 * 109.47062 * 65.64645 * 3 2 1 14 14 C 1.46897 * 111.00241 * 38.71447 * 13 3 2 15 15 C 1.53004 * 109.47372 * 67.73252 * 14 13 3 16 16 C 1.46897 * 111.00134 * 274.75864 * 13 3 2 17 17 H 1.09004 * 110.62906 * 64.67792 * 16 13 3 18 18 C 1.55148 * 110.70816 * 187.97210 * 16 13 3 19 19 C 1.54907 * 101.65255 * 154.03611 * 18 16 13 20 20 N 1.47844 * 104.79604 * 322.93090 * 19 18 16 21 21 C 1.47438 * 108.56748 * 24.09687 * 20 19 18 22 22 H 1.09000 * 109.47430 * 44.55043 * 1 2 3 23 23 H 1.09005 * 109.46925 * 164.55168 * 1 2 3 24 24 H 1.08998 * 109.47043 * 284.54823 * 1 2 3 25 25 H 1.08998 * 109.47079 * 240.00580 * 2 1 3 26 26 H 1.08998 * 109.47203 * 119.99981 * 2 1 3 27 27 H 0.96997 * 120.00096 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.47406 * 187.73340 * 14 13 3 29 29 H 1.09004 * 109.46889 * 307.73837 * 14 13 3 30 30 H 1.08998 * 109.47333 * 172.46584 * 15 14 13 31 31 H 1.09003 * 109.46711 * 292.46933 * 15 14 13 32 32 H 1.09008 * 109.47043 * 52.46311 * 15 14 13 33 33 H 1.08998 * 110.98985 * 272.12857 * 18 16 13 34 34 H 1.09004 * 110.98640 * 35.94691 * 18 16 13 35 35 H 1.08999 * 110.37330 * 204.10598 * 19 18 16 36 36 H 1.08999 * 110.46741 * 81.81218 * 19 18 16 37 37 H 1.00905 * 110.99855 * 146.36324 * 20 19 18 38 38 H 1.08996 * 109.89243 * 239.59760 * 21 20 19 39 39 H 1.09004 * 110.02590 * 118.48677 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 3.5405 1.4449 -0.1398 6 1 4.1576 1.8064 0.6693 7 6 4.1252 0.9907 -1.3029 8 7 3.3736 0.5504 -2.2883 9 14 5.9848 1.0008 -1.4792 10 1 6.5352 -0.2896 -0.9921 11 1 6.3457 1.1850 -2.9079 12 1 6.5520 2.1149 -0.6778 13 7 1.6648 2.0945 1.2617 14 6 1.7920 1.1656 2.3926 15 6 3.2692 0.8381 2.6199 16 6 0.3059 2.6473 1.1849 17 1 -0.4270 1.8494 1.0652 18 6 -0.0097 3.5036 2.4396 19 6 -1.0808 4.4792 1.8912 20 7 -0.6476 4.7776 0.5095 21 6 0.1959 3.6667 0.0317 22 1 -0.3634 0.7323 -0.7209 23 1 -0.3633 -0.9906 -0.2738 24 1 -0.3633 0.2581 0.9947 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7849 0.2312 -3.1067 28 1 1.3799 1.6270 3.2900 29 1 1.2462 0.2481 2.1723 30 1 3.3760 0.2585 3.5368 31 1 3.6466 0.2583 1.7774 32 1 3.8375 1.7642 2.7071 33 1 -0.4169 2.8869 3.2408 34 1 0.8750 4.0441 2.7760 35 1 -1.1037 5.3916 2.4870 36 1 -2.0621 4.0047 1.8871 37 1 -1.4423 4.9149 -0.0970 38 1 1.1864 4.0391 -0.2299 39 1 -0.2641 3.1956 -0.8370 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251295238.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:00 Heat of formation + Delta-G solvation = -2.962137 kcal Electronic energy + Delta-G solvation = -17292.129463 eV Core-core repulsion = 14848.150470 eV Total energy + Delta-G solvation = -2443.978993 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.58753 -37.91548 -34.59065 -32.82982 -31.60199 -30.46052 -29.14837 -27.53090 -24.81240 -23.47059 -21.89617 -21.41155 -20.18573 -18.43396 -17.67657 -17.39101 -16.53662 -16.12602 -15.20431 -14.77882 -14.63772 -14.04421 -13.84634 -13.65821 -13.40693 -13.20189 -13.10101 -12.91056 -12.78248 -12.46849 -12.43007 -12.32170 -12.10652 -11.84087 -11.77099 -11.64903 -11.23036 -11.06269 -10.69840 -10.32127 -9.34852 -8.65352 -8.02318 -6.06806 1.41951 1.44391 1.53564 2.47492 3.24095 3.27354 3.51983 3.78948 4.03877 4.23766 4.32988 4.43695 4.48440 4.48881 4.60750 4.62647 4.69533 4.80383 4.88682 4.99531 5.03174 5.08650 5.10053 5.17285 5.24988 5.33606 5.34428 5.48703 5.65178 5.73573 5.86695 5.88763 5.95886 6.37649 6.52608 6.68804 6.88311 7.05592 7.58913 9.04099 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028867 B = 0.009188 C = 0.008868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.724543 B = 3046.757133 C = 3156.641019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.144 4.144 3 C 0.223 3.777 4 H 0.011 0.989 5 C -0.494 4.494 6 H 0.062 0.938 7 C 0.008 3.992 8 N -0.924 5.924 9 Si 0.945 3.055 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.272 1.272 13 N -0.529 5.529 14 C 0.054 3.946 15 C -0.140 4.140 16 C 0.049 3.951 17 H 0.056 0.944 18 C -0.115 4.115 19 C 0.050 3.950 20 N -0.689 5.689 21 C 0.065 3.935 22 H 0.036 0.964 23 H 0.048 0.952 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.256 0.744 28 H 0.073 0.927 29 H 0.035 0.965 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.057 0.943 37 H 0.345 0.655 38 H 0.051 0.949 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.399 2.370 8.666 12.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.184 4.184 3 C 0.116 3.884 4 H 0.029 0.971 5 C -0.533 4.533 6 H 0.081 0.919 7 C -0.190 4.190 8 N -0.565 5.565 9 Si 0.772 3.228 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.197 1.197 13 N -0.254 5.254 14 C -0.073 4.073 15 C -0.197 4.197 16 C -0.060 4.060 17 H 0.074 0.926 18 C -0.153 4.153 19 C -0.079 4.079 20 N -0.320 5.320 21 C -0.065 4.065 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.161 0.839 38 H 0.070 0.930 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.512 3.137 8.749 11.950 hybrid contribution 0.021 -1.514 -1.109 1.877 sum -7.491 1.623 7.640 10.822 Atomic orbital electron populations 1.21965 0.96996 1.00373 1.00324 1.22071 0.93945 1.01486 1.00856 1.19098 0.94246 0.88798 0.86286 0.97148 1.21604 0.92648 1.39037 1.00017 0.91941 1.25600 1.01365 0.96121 0.95881 1.70045 1.35891 1.44740 1.05806 0.85750 0.81985 0.78296 0.76750 1.20397 1.21612 1.19685 1.62417 1.22013 1.36216 1.04705 1.22059 0.97271 0.94625 0.93383 1.21879 0.96313 1.00833 1.00720 1.23149 0.91089 0.95985 0.95812 0.92641 1.22734 0.98964 0.97110 0.96532 1.22851 0.96689 0.99025 0.89321 1.61835 1.23664 1.42121 1.04376 1.22390 0.97651 0.90448 0.96007 0.94511 0.93338 0.92235 0.93083 0.93124 0.93509 0.90909 0.94718 0.92147 0.92799 0.93803 0.89650 0.91404 0.89292 0.92456 0.83886 0.93026 0.94516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.23 8.13 71.98 0.58 -4.64 16 2 C -0.14 -6.57 4.66 30.59 0.14 -6.43 16 3 C 0.22 10.78 1.52 44.17 0.07 10.85 16 4 H 0.01 0.58 6.21 -2.39 -0.01 0.57 16 5 C -0.49 -26.55 6.54 25.60 0.17 -26.38 16 6 H 0.06 3.37 5.88 -2.91 -0.02 3.36 16 7 C 0.01 0.43 5.30 84.65 0.45 0.88 16 8 N -0.92 -53.29 11.73 21.45 0.25 -53.04 16 9 Si 0.94 44.36 29.54 68.60 2.03 46.39 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 13 N -0.53 -21.53 4.24 -843.40 -3.58 -25.11 16 14 C 0.05 1.94 4.87 86.30 0.42 2.36 16 15 C -0.14 -5.18 8.30 71.98 0.60 -4.58 16 16 C 0.05 1.70 2.11 46.10 0.10 1.80 16 17 H 0.06 1.88 4.48 -2.38 -0.01 1.87 16 18 C -0.12 -3.19 5.54 31.98 0.18 -3.02 16 19 C 0.05 1.20 7.57 86.77 0.66 1.85 16 20 N -0.69 -20.08 7.39 -504.45 -3.73 -23.81 16 21 C 0.06 2.35 5.79 86.65 0.50 2.85 16 22 H 0.04 1.41 7.77 -2.39 -0.02 1.39 16 23 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 24 H 0.06 1.98 5.08 -2.39 -0.01 1.97 16 25 H 0.05 2.70 6.42 -2.39 -0.02 2.69 16 26 H 0.05 2.24 5.04 -2.39 -0.01 2.22 16 27 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 28 H 0.07 2.22 6.75 -2.39 -0.02 2.21 16 29 H 0.03 1.24 4.55 -2.38 -0.01 1.23 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 2.32 5.27 -2.39 -0.01 2.31 16 32 H 0.04 1.69 7.63 -2.38 -0.02 1.67 16 33 H 0.08 1.98 7.83 -2.39 -0.02 1.96 16 34 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.34 8.44 8.91 -89.69 -0.80 7.64 16 38 H 0.05 2.28 7.74 -2.39 -0.02 2.26 16 39 H 0.04 1.35 8.03 -2.38 -0.02 1.33 16 Total: -1.00 -59.15 281.17 -0.93 -60.08 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.24 Total: 19.95 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: 3.86 Total: -24.46 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -7.06 Total: -101.95 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -59.15 -0.93 -60.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251295238.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.117 kcal (2) G-P(sol) polarization free energy of solvation -59.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds