Wall clock time and date at job start Mon Mar 30 2020 03:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47201 * 2 1 4 4 H 1.08995 * 109.47239 * 181.78552 * 3 2 1 5 5 C 1.50700 * 109.47188 * 61.78934 * 3 2 1 6 6 H 1.08000 * 120.00500 * 240.00767 * 5 3 2 7 7 C 1.37880 * 119.99915 * 60.00089 * 5 3 2 8 8 N 1.31516 * 119.99956 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99881 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47350 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.46989 * 119.99990 * 9 7 5 12 12 H 1.48500 * 109.46846 * 239.99605 * 9 7 5 13 13 N 1.46896 * 109.47118 * 301.79171 * 3 2 1 14 14 C 1.46844 * 111.00261 * 181.22886 * 13 3 2 15 15 C 1.53036 * 109.52591 * 185.83727 * 14 13 3 16 16 H 1.09000 * 109.50464 * 60.80394 * 15 14 13 17 17 C 1.53001 * 109.50313 * 180.87930 * 15 14 13 18 18 C 1.53118 * 109.27946 * 300.81800 * 15 14 13 19 19 C 1.53120 * 109.15912 * 57.65577 * 18 15 14 20 20 H 1.08997 * 109.53995 * 182.38402 * 19 18 15 21 21 N 1.46901 * 109.50471 * 62.28203 * 19 18 15 22 22 C 1.46848 * 110.99767 * 305.43853 * 13 3 2 23 23 H 1.09007 * 109.46400 * 64.75965 * 1 2 3 24 24 H 1.09001 * 109.47059 * 184.75512 * 1 2 3 25 25 H 1.08998 * 109.47379 * 304.76285 * 1 2 3 26 26 H 1.08997 * 109.47424 * 239.99755 * 2 1 3 27 27 H 1.09003 * 109.46935 * 119.99879 * 2 1 3 28 28 H 0.97001 * 119.99671 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.46531 * 65.81807 * 14 13 3 30 30 H 1.09002 * 109.46244 * 305.85781 * 14 13 3 31 31 H 1.08999 * 109.47403 * 60.00310 * 17 15 14 32 32 H 1.08996 * 109.47039 * 180.02562 * 17 15 14 33 33 H 1.09002 * 109.47232 * 299.99874 * 17 15 14 34 34 H 1.08996 * 109.52494 * 177.55613 * 18 15 14 35 35 H 1.08994 * 109.52295 * 297.74978 * 18 15 14 36 36 H 1.00901 * 111.00062 * 180.19595 * 21 19 18 37 37 H 1.00897 * 111.00521 * 304.15517 * 21 19 18 38 38 H 1.08996 * 109.46390 * 294.17453 * 22 13 3 39 39 H 1.08992 * 109.46500 * 54.15640 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 -0.0320 5 6 1.5743 2.1400 1.2520 6 1 0.9508 3.0190 1.1805 7 6 1.9440 1.6560 2.4890 8 7 2.7028 0.5853 2.5762 9 14 1.3661 2.5202 4.0410 10 1 0.5298 3.6910 3.6735 11 1 0.5654 1.5780 4.8633 12 1 2.5442 2.9789 4.8200 13 7 1.5154 2.1474 -1.1772 14 6 2.0086 3.5297 -1.2261 15 6 1.3304 4.2743 -2.3783 16 1 0.2527 4.2920 -2.2159 17 6 1.8608 5.7079 -2.4425 18 6 1.6381 3.5560 -3.6951 19 6 1.1578 2.1051 -3.6002 20 1 1.4118 1.5763 -4.5188 21 7 -0.2983 2.0821 -3.4076 22 6 1.8411 1.4233 -2.4125 23 1 -0.3632 0.4383 -0.9297 24 1 -0.3633 -1.0241 0.0852 25 1 -0.3634 0.5859 0.8442 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.9632 0.2451 3.4465 29 1 3.0875 3.5251 -1.3817 30 1 1.7798 4.0304 -0.2853 31 1 2.9383 5.6897 -2.6063 32 1 1.3771 6.2379 -3.2630 33 1 1.6446 6.2177 -1.5036 34 1 1.1214 4.0579 -4.5132 35 1 2.7126 3.5729 -3.8768 36 1 -0.6390 1.1348 -3.3389 37 1 -0.5646 2.6218 -2.5978 38 1 2.9206 1.4286 -2.5627 39 1 1.4903 0.3944 -2.3337 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251321670.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:32 Heat of formation + Delta-G solvation = -13.252977 kcal Electronic energy + Delta-G solvation = -17224.395029 eV Core-core repulsion = 14779.969792 eV Total energy + Delta-G solvation = -2444.425237 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.07082 -35.39014 -33.29163 -32.24131 -30.59852 -28.19811 -26.59828 -25.98243 -23.90213 -22.26490 -21.29597 -19.03115 -18.47522 -16.20330 -15.78154 -15.13742 -14.62847 -14.30986 -14.10539 -13.48068 -13.19950 -12.91004 -12.54398 -12.27488 -11.99764 -11.87300 -11.55422 -11.37725 -11.19633 -10.96338 -10.81094 -10.50406 -10.32324 -10.10429 -9.95105 -9.74669 -9.63935 -9.36654 -8.80856 -8.41454 -8.18972 -7.14930 -6.02171 -4.05703 3.27691 3.36267 3.40024 4.38878 4.84435 5.12626 5.19770 5.25622 5.31701 5.40383 5.66345 5.85621 5.93509 6.00271 6.08094 6.14426 6.21796 6.31561 6.36498 6.43218 6.46294 6.52135 6.58828 6.70340 6.82840 6.85660 7.05110 7.29494 7.39757 7.61313 7.62853 7.75192 7.82293 7.96756 8.19620 8.32822 8.59177 9.00283 9.58497 11.04186 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028829 B = 0.009680 C = 0.008116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.011321 B = 2891.868569 C = 3449.147773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.113 4.113 3 C 0.218 3.782 4 H -0.005 1.005 5 C -0.494 4.494 6 H 0.062 0.938 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.527 5.527 14 C 0.068 3.932 15 C -0.092 4.092 16 H 0.076 0.924 17 C -0.143 4.143 18 C -0.105 4.105 19 C 0.094 3.906 20 H 0.069 0.931 21 N -0.838 5.838 22 C 0.015 3.985 23 H 0.037 0.963 24 H 0.015 0.985 25 H 0.060 0.940 26 H 0.012 0.988 27 H 0.092 0.908 28 H 0.259 0.741 29 H 0.016 0.984 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.333 0.667 37 H 0.350 0.650 38 H 0.018 0.982 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.127 3.748 -8.985 9.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.151 4.151 3 C 0.112 3.888 4 H 0.012 0.988 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.252 5.252 14 C -0.060 4.060 15 C -0.111 4.111 16 H 0.094 0.906 17 C -0.200 4.200 18 C -0.143 4.143 19 C -0.018 4.018 20 H 0.087 0.913 21 N -0.367 5.367 22 C -0.115 4.115 23 H 0.056 0.944 24 H 0.034 0.966 25 H 0.079 0.921 26 H 0.031 0.969 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.144 0.856 37 H 0.165 0.835 38 H 0.037 0.963 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.584 4.012 -9.507 10.638 hybrid contribution 1.022 -0.229 1.803 2.085 sum -1.563 3.783 -7.704 8.724 Atomic orbital electron populations 1.21469 0.97276 0.97654 1.01286 1.21602 0.95117 0.98338 1.00081 1.19236 0.92418 0.90664 0.86466 0.98775 1.21084 1.30772 1.11808 0.89573 0.91954 1.24911 0.95238 0.95095 0.98961 1.69888 1.36546 1.22653 1.24124 0.86526 0.78422 0.79657 0.83335 1.19743 1.21096 1.21253 1.61963 1.59930 1.01312 1.01947 1.22010 0.95359 0.90457 0.98184 1.21214 1.00934 0.94038 0.94948 0.90606 1.21762 1.00608 0.96397 1.01279 1.21622 0.99868 0.95184 0.97601 1.21426 0.88523 0.95724 0.96169 0.91258 1.59186 1.10990 1.18108 1.48446 1.22927 0.97503 0.98823 0.92274 0.94404 0.96559 0.92115 0.96910 0.88961 0.93100 0.96585 0.89849 0.93206 0.93158 0.92695 0.92009 0.92571 0.85590 0.83506 0.96345 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 9.43 37.16 0.35 -2.19 16 2 C -0.11 -2.65 4.95 -26.73 -0.13 -2.78 16 3 C 0.22 5.29 1.76 -68.86 -0.12 5.17 16 4 H -0.01 -0.15 8.14 -51.93 -0.42 -0.57 16 5 C -0.49 -12.94 6.60 -34.44 -0.23 -13.16 16 6 H 0.06 1.65 6.79 -52.49 -0.36 1.29 16 7 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 8 N -0.89 -24.99 11.31 55.43 0.63 -24.36 16 9 Si 0.89 21.03 29.54 -169.99 -5.02 16.00 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.53 -10.60 3.25 -228.08 -0.74 -11.34 16 14 C 0.07 1.30 4.55 -3.84 -0.02 1.28 16 15 C -0.09 -1.42 2.55 -90.54 -0.23 -1.65 16 16 H 0.08 1.22 6.70 -51.93 -0.35 0.87 16 17 C -0.14 -1.89 9.20 37.16 0.34 -1.55 16 18 C -0.10 -1.51 4.99 -26.61 -0.13 -1.64 16 19 C 0.09 1.42 3.71 -67.63 -0.25 1.17 16 20 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 21 N -0.84 -12.41 9.23 -4.59 -0.04 -12.45 16 22 C 0.02 0.27 4.50 -3.83 -0.02 0.25 16 23 H 0.04 0.74 7.29 -51.92 -0.38 0.36 16 24 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 1.41 7.12 -51.93 -0.37 1.04 16 26 H 0.01 0.27 6.31 -51.93 -0.33 -0.06 16 27 H 0.09 2.44 6.02 -51.93 -0.31 2.13 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 1.74 6.38 -51.93 -0.33 1.41 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.33 4.72 9.04 -39.29 -0.36 4.37 16 37 H 0.35 5.62 6.63 -39.29 -0.26 5.36 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 1.35 5.64 -51.93 -0.29 1.06 16 LS Contribution 289.84 15.07 4.37 4.37 Total: -1.00 -26.37 289.84 -8.04 -34.41 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.70 Total: 6.99 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -0.53 Total: -13.61 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.16 Total: -48.15 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.37 -8.04 -34.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251321670.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.152 kcal (2) G-P(sol) polarization free energy of solvation -26.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds