Wall clock time and date at job start Mon Mar 30 2020 03:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47201 * 2 1 4 4 H 1.08995 * 109.47239 * 181.78552 * 3 2 1 5 5 C 1.50700 * 109.47188 * 61.78934 * 3 2 1 6 6 H 1.08000 * 120.00500 * 240.00767 * 5 3 2 7 7 C 1.37880 * 119.99915 * 60.00089 * 5 3 2 8 8 N 1.31516 * 119.99956 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99881 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47350 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.46989 * 119.99990 * 9 7 5 12 12 H 1.48500 * 109.46846 * 239.99605 * 9 7 5 13 13 N 1.46896 * 109.47118 * 301.79171 * 3 2 1 14 14 C 1.46844 * 111.00261 * 181.22886 * 13 3 2 15 15 C 1.53036 * 109.52591 * 185.83727 * 14 13 3 16 16 H 1.09000 * 109.50464 * 60.80394 * 15 14 13 17 17 C 1.53001 * 109.50313 * 180.87930 * 15 14 13 18 18 C 1.53118 * 109.27946 * 300.81800 * 15 14 13 19 19 C 1.53120 * 109.15912 * 57.65577 * 18 15 14 20 20 H 1.08997 * 109.53995 * 182.38402 * 19 18 15 21 21 N 1.46901 * 109.50471 * 62.28203 * 19 18 15 22 22 C 1.46848 * 110.99767 * 305.43853 * 13 3 2 23 23 H 1.09007 * 109.46400 * 64.75965 * 1 2 3 24 24 H 1.09001 * 109.47059 * 184.75512 * 1 2 3 25 25 H 1.08998 * 109.47379 * 304.76285 * 1 2 3 26 26 H 1.08997 * 109.47424 * 239.99755 * 2 1 3 27 27 H 1.09003 * 109.46935 * 119.99879 * 2 1 3 28 28 H 0.97001 * 119.99671 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.46531 * 65.81807 * 14 13 3 30 30 H 1.09002 * 109.46244 * 305.85781 * 14 13 3 31 31 H 1.08999 * 109.47403 * 60.00310 * 17 15 14 32 32 H 1.08996 * 109.47039 * 180.02562 * 17 15 14 33 33 H 1.09002 * 109.47232 * 299.99874 * 17 15 14 34 34 H 1.08996 * 109.52494 * 177.55613 * 18 15 14 35 35 H 1.08994 * 109.52295 * 297.74978 * 18 15 14 36 36 H 1.00901 * 111.00062 * 180.19595 * 21 19 18 37 37 H 1.00897 * 111.00521 * 304.15517 * 21 19 18 38 38 H 1.08996 * 109.46390 * 294.17453 * 22 13 3 39 39 H 1.08992 * 109.46500 * 54.15640 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 -0.0320 5 6 1.5743 2.1400 1.2520 6 1 0.9508 3.0190 1.1805 7 6 1.9440 1.6560 2.4890 8 7 2.7028 0.5853 2.5762 9 14 1.3661 2.5202 4.0410 10 1 0.5298 3.6910 3.6735 11 1 0.5654 1.5780 4.8633 12 1 2.5442 2.9789 4.8200 13 7 1.5154 2.1474 -1.1772 14 6 2.0086 3.5297 -1.2261 15 6 1.3304 4.2743 -2.3783 16 1 0.2527 4.2920 -2.2159 17 6 1.8608 5.7079 -2.4425 18 6 1.6381 3.5560 -3.6951 19 6 1.1578 2.1051 -3.6002 20 1 1.4118 1.5763 -4.5188 21 7 -0.2983 2.0821 -3.4076 22 6 1.8411 1.4233 -2.4125 23 1 -0.3632 0.4383 -0.9297 24 1 -0.3633 -1.0241 0.0852 25 1 -0.3634 0.5859 0.8442 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.9632 0.2451 3.4465 29 1 3.0875 3.5251 -1.3817 30 1 1.7798 4.0304 -0.2853 31 1 2.9383 5.6897 -2.6063 32 1 1.3771 6.2379 -3.2630 33 1 1.6446 6.2177 -1.5036 34 1 1.1214 4.0579 -4.5132 35 1 2.7126 3.5729 -3.8768 36 1 -0.6390 1.1348 -3.3389 37 1 -0.5646 2.6218 -2.5978 38 1 2.9206 1.4286 -2.5627 39 1 1.4903 0.3944 -2.3337 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251321670.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:32 Heat of formation + Delta-G solvation = -30.092744 kcal Electronic energy + Delta-G solvation = -17225.125256 eV Core-core repulsion = 14779.969792 eV Total energy + Delta-G solvation = -2445.155464 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.54278 -37.08594 -34.56272 -34.12435 -32.35158 -29.54769 -28.33256 -27.37687 -25.71332 -23.91269 -22.67919 -20.76975 -19.86010 -18.15612 -17.42534 -16.54889 -16.15427 -15.98608 -15.63263 -14.95645 -14.76532 -14.55625 -14.10653 -13.77630 -13.54389 -13.37015 -12.90465 -12.84005 -12.68391 -12.62092 -12.53549 -12.35123 -11.96261 -11.78789 -11.54025 -11.43471 -11.17281 -10.94625 -10.71990 -10.44045 -9.46621 -8.87000 -8.09338 -6.19069 1.38784 1.41835 1.52305 2.41664 3.17945 3.31705 3.88407 3.95524 3.99197 4.13609 4.36117 4.52141 4.60212 4.61227 4.71518 4.76118 4.79583 4.84731 4.91188 4.97067 4.99071 5.08093 5.19289 5.23323 5.33394 5.41796 5.43840 5.50687 5.58524 5.72947 5.77769 5.86069 6.31111 6.40223 6.46563 6.73694 6.78617 6.94915 7.48816 8.96239 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028829 B = 0.009680 C = 0.008116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.011321 B = 2891.868569 C = 3449.147773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.108 4.108 3 C 0.224 3.776 4 H -0.053 1.053 5 C -0.498 4.498 6 H 0.057 0.943 7 C 0.012 3.988 8 N -0.921 5.921 9 Si 0.952 3.048 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.286 1.286 13 N -0.521 5.521 14 C 0.070 3.930 15 C -0.083 4.083 16 H 0.074 0.926 17 C -0.139 4.139 18 C -0.101 4.101 19 C 0.101 3.899 20 H 0.089 0.911 21 N -0.831 5.831 22 C 0.015 3.985 23 H 0.055 0.945 24 H 0.034 0.966 25 H 0.037 0.963 26 H 0.025 0.975 27 H 0.059 0.941 28 H 0.259 0.741 29 H 0.001 0.999 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.338 0.662 37 H 0.344 0.656 38 H 0.006 0.994 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.384 4.601 -10.405 11.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.146 4.146 3 C 0.117 3.883 4 H -0.035 1.035 5 C -0.536 4.536 6 H 0.075 0.925 7 C -0.186 4.186 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.212 1.212 13 N -0.245 5.245 14 C -0.059 4.059 15 C -0.102 4.102 16 H 0.092 0.908 17 C -0.196 4.196 18 C -0.139 4.139 19 C -0.012 4.012 20 H 0.107 0.893 21 N -0.360 5.360 22 C -0.115 4.115 23 H 0.074 0.926 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.019 0.981 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.024 0.976 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.853 4.872 -10.949 12.588 hybrid contribution 1.454 -0.509 2.211 2.695 sum -2.399 4.364 -8.737 10.057 Atomic orbital electron populations 1.21318 0.95292 0.98589 1.01150 1.21459 0.96728 0.97375 0.99075 1.19018 0.89617 0.91767 0.87904 1.03547 1.21268 1.30262 1.11545 0.90570 0.92502 1.25628 0.95459 0.95732 1.01793 1.70026 1.37621 1.23875 1.24611 0.85592 0.77923 0.78786 0.79871 1.19060 1.20796 1.21182 1.61928 1.59201 1.01720 1.01634 1.22021 0.94887 0.90045 0.98909 1.21131 1.00314 0.94957 0.93791 0.90778 1.21732 1.00867 0.94936 1.02103 1.21614 1.00348 0.94563 0.97328 1.21448 0.88341 0.96164 0.95226 0.89300 1.59201 1.10446 1.18413 1.47899 1.23042 0.97192 0.98855 0.92389 0.92589 0.94674 0.94421 0.95654 0.92204 0.93207 0.98115 0.92297 0.93045 0.90844 0.93007 0.90050 0.92257 0.85006 0.84204 0.97564 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.43 9.43 71.98 0.68 -3.75 16 2 C -0.11 -5.12 4.95 30.60 0.15 -4.97 16 3 C 0.22 11.19 1.76 44.17 0.08 11.26 16 4 H -0.05 -3.09 8.14 -2.39 -0.02 -3.11 16 5 C -0.50 -26.69 6.60 25.60 0.17 -26.52 16 6 H 0.06 3.06 6.79 -2.91 -0.02 3.04 16 7 C 0.01 0.66 5.30 84.66 0.45 1.11 16 8 N -0.92 -52.99 11.31 21.45 0.24 -52.75 16 9 Si 0.95 43.64 29.54 68.60 2.03 45.67 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 13 N -0.52 -21.00 3.25 -875.52 -2.84 -23.84 16 14 C 0.07 2.67 4.55 86.33 0.39 3.06 16 15 C -0.08 -2.40 2.55 -10.74 -0.03 -2.43 16 16 H 0.07 2.21 6.70 -2.39 -0.02 2.19 16 17 C -0.14 -3.36 9.20 71.98 0.66 -2.70 16 18 C -0.10 -2.61 4.99 30.67 0.15 -2.46 16 19 C 0.10 2.78 3.71 44.97 0.17 2.95 16 20 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 21 N -0.83 -22.23 9.23 -168.45 -1.55 -23.79 16 22 C 0.02 0.54 4.50 86.33 0.39 0.93 16 23 H 0.06 2.09 7.29 -2.38 -0.02 2.08 16 24 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.04 1.73 7.12 -2.39 -0.02 1.71 16 26 H 0.02 1.10 6.31 -2.39 -0.02 1.09 16 27 H 0.06 3.25 6.02 -2.39 -0.01 3.24 16 28 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.00 0.02 8.14 -2.38 -0.02 0.01 16 30 H 0.06 2.52 6.38 -2.39 -0.02 2.50 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.34 8.60 9.04 -89.69 -0.81 7.79 16 37 H 0.34 10.18 6.63 -89.70 -0.59 9.59 16 38 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.07 2.48 5.64 -2.39 -0.01 2.47 16 Total: -1.00 -57.44 289.84 0.76 -56.68 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -0.38 Total: 21.55 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 3.26 Total: -23.52 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -4.15 Total: -100.38 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -57.44 0.76 -56.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251321670.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.590 kcal (2) G-P(sol) polarization free energy of solvation -57.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds