Wall clock time and date at job start Mon Mar 30 2020 03:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47238 * 2 1 4 4 H 1.09009 * 109.47411 * 181.85425 * 3 2 1 5 5 C 1.50700 * 109.47394 * 61.85361 * 3 2 1 6 6 H 1.07998 * 120.00343 * 240.00490 * 5 3 2 7 7 C 1.37880 * 119.99957 * 59.99509 * 5 3 2 8 8 N 1.31517 * 119.99903 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99881 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47120 * 90.00314 * 9 7 5 11 11 H 1.48502 * 109.47160 * 209.99783 * 9 7 5 12 12 H 1.48500 * 109.47581 * 330.00301 * 9 7 5 13 13 N 1.46904 * 109.47628 * 301.85213 * 3 2 1 14 14 C 1.46852 * 110.99534 * 305.45278 * 13 3 2 15 15 C 1.53036 * 109.51965 * 174.15666 * 14 13 3 16 16 C 1.53116 * 109.27927 * 59.17936 * 15 14 13 17 17 H 1.09000 * 109.51964 * 62.25152 * 16 15 14 18 18 N 1.46900 * 109.52311 * 182.37465 * 16 15 14 19 19 C 1.53113 * 109.15362 * 302.33749 * 16 15 14 20 20 H 1.09001 * 109.51533 * 297.72306 * 19 16 15 21 21 C 1.53003 * 109.49670 * 177.60050 * 19 16 15 22 22 C 1.46843 * 111.00317 * 181.24448 * 13 3 2 23 23 H 1.08999 * 109.47474 * 184.74691 * 1 2 3 24 24 H 1.08997 * 109.47300 * 304.75149 * 1 2 3 25 25 H 1.09001 * 109.47010 * 64.74720 * 1 2 3 26 26 H 1.09005 * 109.46804 * 240.00354 * 2 1 3 27 27 H 1.08999 * 109.47275 * 120.00700 * 2 1 3 28 28 H 0.96999 * 119.99589 * 179.97438 * 8 7 5 29 29 H 1.08991 * 109.46256 * 294.17440 * 14 13 3 30 30 H 1.09000 * 109.46167 * 54.14133 * 14 13 3 31 31 H 1.09004 * 109.50306 * 179.12154 * 15 14 13 32 32 H 1.09001 * 109.50536 * 299.19883 * 15 14 13 33 33 H 1.00903 * 111.00348 * 299.99900 * 18 16 15 34 34 H 1.00894 * 111.00147 * 63.96064 * 18 16 15 35 35 H 1.08996 * 109.47718 * 300.20786 * 21 19 16 36 36 H 1.09007 * 109.46634 * 60.20977 * 21 19 16 37 37 H 1.08996 * 109.46923 * 180.19968 * 21 19 16 38 38 H 1.09001 * 109.46129 * 305.84911 * 22 13 3 39 39 H 1.08997 * 109.46262 * 65.83084 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1295 1.4426 -0.0333 5 6 1.5755 2.1395 1.2528 6 1 0.9520 3.0185 1.1822 7 6 1.9465 1.6550 2.4892 8 7 2.7061 0.5848 2.5752 9 14 1.3703 2.5186 4.0420 10 1 0.0751 1.9386 4.4794 11 1 2.3815 2.3362 5.1142 12 1 1.1961 3.9675 3.7671 13 7 1.5141 2.1479 -1.1764 14 6 1.8384 1.4241 -2.4124 15 6 1.1539 2.1063 -3.5990 16 6 1.6343 3.5571 -3.6940 17 1 2.7087 3.5737 -3.8769 18 7 0.9381 4.2335 -4.7965 19 6 1.3280 4.2749 -2.3767 20 1 0.2505 4.2920 -2.2133 21 6 1.8586 5.7086 -2.4411 22 6 2.0077 3.5300 -1.2255 23 1 -0.3634 -1.0241 0.0850 24 1 -0.3634 0.5858 0.8443 25 1 -0.3633 0.4384 -0.9295 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 2.9673 0.2442 3.4450 29 1 2.9177 1.4291 -2.5636 30 1 1.4877 0.3951 -2.3333 31 1 1.4073 1.5781 -4.5182 32 1 0.0736 2.0888 -3.4553 33 1 1.1215 3.7743 -5.6760 34 1 -0.0533 4.2897 -4.6178 35 1 2.9358 5.6904 -2.6062 36 1 1.3741 6.2387 -3.2612 37 1 1.6435 6.2181 -1.5018 38 1 1.7799 4.0306 -0.2844 39 1 3.0863 3.5251 -1.3825 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251321775.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:04 Heat of formation + Delta-G solvation = -12.529588 kcal Electronic energy + Delta-G solvation = -17000.574847 eV Core-core repulsion = 14556.180978 eV Total energy + Delta-G solvation = -2444.393868 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.94451 -35.77858 -32.83956 -32.15858 -30.82770 -29.24142 -26.06553 -25.74810 -23.44119 -21.92895 -21.57060 -19.45032 -18.76216 -16.07533 -15.65262 -15.48606 -14.55294 -14.39131 -13.79712 -13.58629 -13.43955 -12.98860 -12.46618 -12.16959 -12.07290 -11.82780 -11.50504 -11.31543 -10.91595 -10.84303 -10.66549 -10.56227 -10.37483 -10.30877 -9.95536 -9.75887 -9.64861 -9.32625 -8.79424 -8.46699 -8.33922 -7.09356 -5.98696 -4.02035 3.31536 3.38282 3.41356 4.42072 4.72693 4.89893 5.13122 5.25774 5.33470 5.51435 5.60233 5.87229 5.94208 6.01927 6.12326 6.13893 6.28576 6.34866 6.41999 6.51044 6.55878 6.59794 6.62665 6.74381 6.83951 6.85799 7.11935 7.27267 7.34637 7.44266 7.55888 7.67805 7.77915 7.86047 8.24645 8.37358 8.64332 9.03778 9.61909 11.07748 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031794 B = 0.008682 C = 0.007375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.456663 B = 3224.459876 C = 3795.525134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.113 4.113 3 C 0.217 3.783 4 H -0.004 1.004 5 C -0.494 4.494 6 H 0.062 0.938 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.529 5.529 14 C 0.054 3.946 15 C -0.146 4.146 16 C 0.095 3.905 17 H 0.072 0.928 18 N -0.844 5.844 19 C -0.080 4.080 20 H 0.071 0.929 21 C -0.135 4.135 22 C 0.070 3.930 23 H 0.015 0.985 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.013 0.987 27 H 0.092 0.908 28 H 0.259 0.741 29 H 0.017 0.983 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.334 0.666 34 H 0.337 0.663 35 H 0.046 0.954 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.554 3.730 -10.372 11.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.152 4.152 3 C 0.111 3.889 4 H 0.013 0.987 5 C -0.533 4.533 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.721 3.279 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.253 5.253 14 C -0.075 4.075 15 C -0.186 4.186 16 C -0.017 4.017 17 H 0.090 0.910 18 N -0.371 5.371 19 C -0.100 4.100 20 H 0.089 0.911 21 C -0.193 4.193 22 C -0.059 4.059 23 H 0.034 0.966 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.032 0.968 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -2.514 4.275 -9.993 11.156 hybrid contribution 0.158 -0.709 0.699 1.008 sum -2.356 3.567 -9.294 10.230 Atomic orbital electron populations 1.21468 0.97303 0.97583 1.01421 1.21605 0.95137 0.98327 1.00096 1.19243 0.92423 0.90692 0.86499 0.98681 1.21061 1.30752 1.11830 0.89618 0.92004 1.24906 0.95235 0.95122 0.98931 1.69879 1.36476 1.22710 1.24233 0.86580 0.78358 0.80003 0.82972 1.20731 1.21415 1.19945 1.62024 1.60038 1.01275 1.02007 1.22003 0.96467 0.98506 0.90553 1.22406 1.01316 0.97031 0.97814 1.21548 0.98036 0.90961 0.91120 0.91029 1.58984 1.15056 1.58398 1.04669 1.21198 1.00832 0.94486 0.93445 0.91095 1.21668 1.00523 0.96012 1.01089 1.21983 0.95292 0.90488 0.98096 0.96612 0.92153 0.94240 0.96819 0.88954 0.93057 0.96509 0.90780 0.92929 0.91642 0.85464 0.85100 0.93523 0.92101 0.93299 0.89614 0.96518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.43 37.15 0.35 -2.30 16 2 C -0.11 -2.70 4.95 -26.74 -0.13 -2.84 16 3 C 0.22 5.38 1.76 -68.87 -0.12 5.26 16 4 H 0.00 -0.12 8.14 -51.92 -0.42 -0.54 16 5 C -0.49 -13.18 6.61 -34.44 -0.23 -13.41 16 6 H 0.06 1.66 6.79 -52.49 -0.36 1.31 16 7 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 8 N -0.89 -25.23 11.31 55.43 0.63 -24.61 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.53 -11.09 3.79 -228.08 -0.86 -11.95 16 14 C 0.05 0.99 4.87 -3.83 -0.02 0.97 16 15 C -0.15 -2.15 5.67 -26.65 -0.15 -2.30 16 16 C 0.09 1.34 2.73 -67.59 -0.18 1.16 16 17 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 18 N -0.84 -9.89 8.62 -4.57 -0.04 -9.93 16 19 C -0.08 -1.27 2.52 -90.54 -0.23 -1.50 16 20 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 21 C -0.14 -1.93 9.06 37.16 0.34 -1.59 16 22 C 0.07 1.37 4.55 -3.83 -0.02 1.36 16 23 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.06 1.44 7.12 -51.93 -0.37 1.07 16 25 H 0.04 0.82 7.28 -51.93 -0.38 0.44 16 26 H 0.01 0.30 6.31 -51.93 -0.33 -0.03 16 27 H 0.09 2.47 6.02 -51.93 -0.31 2.15 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 1.39 5.64 -51.93 -0.29 1.09 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.33 3.35 9.04 -39.29 -0.36 2.99 16 34 H 0.34 3.71 8.98 -39.29 -0.35 3.36 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.82 7.69 -51.93 -0.40 0.42 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.84 6.38 -51.93 -0.33 1.51 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 293.01 15.07 4.42 4.42 Total: -1.00 -27.22 293.01 -8.21 -35.43 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.84 Total: 4.13 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -0.49 Total: -13.68 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.28 Total: -46.49 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.22 -8.21 -35.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251321775.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.899 kcal (2) G-P(sol) polarization free energy of solvation -27.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds