Wall clock time and date at job start Mon Mar 30 2020 03:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47238 * 2 1 4 4 H 1.09009 * 109.47411 * 181.85425 * 3 2 1 5 5 C 1.50700 * 109.47394 * 61.85361 * 3 2 1 6 6 H 1.07998 * 120.00343 * 240.00490 * 5 3 2 7 7 C 1.37880 * 119.99957 * 59.99509 * 5 3 2 8 8 N 1.31517 * 119.99903 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99881 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47120 * 90.00314 * 9 7 5 11 11 H 1.48502 * 109.47160 * 209.99783 * 9 7 5 12 12 H 1.48500 * 109.47581 * 330.00301 * 9 7 5 13 13 N 1.46904 * 109.47628 * 301.85213 * 3 2 1 14 14 C 1.46852 * 110.99534 * 305.45278 * 13 3 2 15 15 C 1.53036 * 109.51965 * 174.15666 * 14 13 3 16 16 C 1.53116 * 109.27927 * 59.17936 * 15 14 13 17 17 H 1.09000 * 109.51964 * 62.25152 * 16 15 14 18 18 N 1.46900 * 109.52311 * 182.37465 * 16 15 14 19 19 C 1.53113 * 109.15362 * 302.33749 * 16 15 14 20 20 H 1.09001 * 109.51533 * 297.72306 * 19 16 15 21 21 C 1.53003 * 109.49670 * 177.60050 * 19 16 15 22 22 C 1.46843 * 111.00317 * 181.24448 * 13 3 2 23 23 H 1.08999 * 109.47474 * 184.74691 * 1 2 3 24 24 H 1.08997 * 109.47300 * 304.75149 * 1 2 3 25 25 H 1.09001 * 109.47010 * 64.74720 * 1 2 3 26 26 H 1.09005 * 109.46804 * 240.00354 * 2 1 3 27 27 H 1.08999 * 109.47275 * 120.00700 * 2 1 3 28 28 H 0.96999 * 119.99589 * 179.97438 * 8 7 5 29 29 H 1.08991 * 109.46256 * 294.17440 * 14 13 3 30 30 H 1.09000 * 109.46167 * 54.14133 * 14 13 3 31 31 H 1.09004 * 109.50306 * 179.12154 * 15 14 13 32 32 H 1.09001 * 109.50536 * 299.19883 * 15 14 13 33 33 H 1.00903 * 111.00348 * 299.99900 * 18 16 15 34 34 H 1.00894 * 111.00147 * 63.96064 * 18 16 15 35 35 H 1.08996 * 109.47718 * 300.20786 * 21 19 16 36 36 H 1.09007 * 109.46634 * 60.20977 * 21 19 16 37 37 H 1.08996 * 109.46923 * 180.19968 * 21 19 16 38 38 H 1.09001 * 109.46129 * 305.84911 * 22 13 3 39 39 H 1.08997 * 109.46262 * 65.83084 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1295 1.4426 -0.0333 5 6 1.5755 2.1395 1.2528 6 1 0.9520 3.0185 1.1822 7 6 1.9465 1.6550 2.4892 8 7 2.7061 0.5848 2.5752 9 14 1.3703 2.5186 4.0420 10 1 0.0751 1.9386 4.4794 11 1 2.3815 2.3362 5.1142 12 1 1.1961 3.9675 3.7671 13 7 1.5141 2.1479 -1.1764 14 6 1.8384 1.4241 -2.4124 15 6 1.1539 2.1063 -3.5990 16 6 1.6343 3.5571 -3.6940 17 1 2.7087 3.5737 -3.8769 18 7 0.9381 4.2335 -4.7965 19 6 1.3280 4.2749 -2.3767 20 1 0.2505 4.2920 -2.2133 21 6 1.8586 5.7086 -2.4411 22 6 2.0077 3.5300 -1.2255 23 1 -0.3634 -1.0241 0.0850 24 1 -0.3634 0.5858 0.8443 25 1 -0.3633 0.4384 -0.9295 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 2.9673 0.2442 3.4450 29 1 2.9177 1.4291 -2.5636 30 1 1.4877 0.3951 -2.3333 31 1 1.4073 1.5781 -4.5182 32 1 0.0736 2.0888 -3.4553 33 1 1.1215 3.7743 -5.6760 34 1 -0.0533 4.2897 -4.6178 35 1 2.9358 5.6904 -2.6062 36 1 1.3741 6.2387 -3.2612 37 1 1.6435 6.2181 -1.5018 38 1 1.7799 4.0306 -0.2844 39 1 3.0863 3.5251 -1.3825 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251321775.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:04 Heat of formation + Delta-G solvation = -30.641745 kcal Electronic energy + Delta-G solvation = -17001.360249 eV Core-core repulsion = 14556.180978 eV Total energy + Delta-G solvation = -2445.179270 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.41676 -37.38833 -34.59608 -33.54658 -32.59922 -30.66145 -27.96044 -27.17194 -25.18940 -23.47963 -23.02204 -20.83166 -20.53165 -18.12140 -17.28398 -16.68885 -16.19318 -15.97187 -15.26581 -15.15113 -14.97382 -14.55557 -13.99802 -13.77532 -13.60823 -13.38712 -13.04074 -12.80632 -12.68818 -12.51762 -12.40359 -12.08912 -11.99187 -11.79598 -11.72264 -11.51948 -11.26640 -11.00480 -10.74962 -10.43901 -9.46867 -8.86513 -8.08080 -6.17887 1.41281 1.42419 1.51866 2.42997 3.19052 3.35063 3.68171 3.84181 3.99729 4.23453 4.29637 4.47876 4.57562 4.61399 4.69886 4.76305 4.80232 4.83497 4.90960 4.97382 5.04175 5.09013 5.20910 5.26620 5.30880 5.42086 5.44649 5.48712 5.58012 5.73927 5.78888 5.88718 6.29207 6.33143 6.46567 6.71128 6.80203 6.95602 7.49841 8.97489 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031794 B = 0.008682 C = 0.007375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.456663 B = 3224.459876 C = 3795.525134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.109 4.109 3 C 0.223 3.777 4 H -0.049 1.049 5 C -0.501 4.501 6 H 0.055 0.945 7 C 0.013 3.987 8 N -0.921 5.921 9 Si 0.952 3.048 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 N -0.529 5.529 14 C 0.051 3.949 15 C -0.135 4.135 16 C 0.104 3.896 17 H 0.065 0.935 18 N -0.837 5.837 19 C -0.072 4.072 20 H 0.068 0.932 21 C -0.128 4.128 22 C 0.072 3.928 23 H 0.036 0.964 24 H 0.036 0.964 25 H 0.052 0.948 26 H 0.028 0.972 27 H 0.061 0.939 28 H 0.260 0.740 29 H 0.007 0.993 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.348 0.652 34 H 0.345 0.655 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.060 0.940 39 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.818 4.436 -11.904 13.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.147 4.147 3 C 0.116 3.884 4 H -0.032 1.032 5 C -0.540 4.540 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.194 1.194 13 N -0.253 5.253 14 C -0.078 4.078 15 C -0.175 4.175 16 C -0.008 4.008 17 H 0.083 0.917 18 N -0.366 5.366 19 C -0.092 4.092 20 H 0.087 0.913 21 C -0.186 4.186 22 C -0.056 4.056 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.025 0.975 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -3.790 4.991 -11.555 13.145 hybrid contribution 0.590 -0.934 1.134 1.583 sum -3.201 4.057 -10.421 11.632 Atomic orbital electron populations 1.21313 0.95531 0.98580 1.00993 1.21474 0.96567 0.97402 0.99294 1.19033 0.89784 0.91782 0.87834 1.03174 1.21252 1.30384 1.11626 0.90705 0.92667 1.25626 0.95404 0.95753 1.01772 1.70015 1.37467 1.23884 1.24756 0.85646 0.77946 0.79157 0.79457 1.20163 1.21211 1.19398 1.62003 1.59515 1.01821 1.01994 1.22104 0.96426 0.98578 0.90689 1.22355 1.00894 0.97235 0.96976 1.21330 0.97957 0.90512 0.90993 0.91712 1.58886 1.15469 1.57879 1.04384 1.21096 1.00103 0.95085 0.92867 0.91328 1.21613 1.00493 0.94917 1.01599 1.21964 0.94904 0.90021 0.98752 0.94526 0.94490 0.92920 0.95328 0.92009 0.93132 0.97452 0.91123 0.90243 0.91398 0.83840 0.84225 0.93653 0.90581 0.93511 0.92166 0.97896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.62 9.43 71.98 0.68 -3.94 16 2 C -0.11 -5.27 4.95 30.59 0.15 -5.11 16 3 C 0.22 11.36 1.76 44.17 0.08 11.44 16 4 H -0.05 -2.89 8.14 -2.38 -0.02 -2.91 16 5 C -0.50 -27.42 6.61 25.60 0.17 -27.25 16 6 H 0.06 3.04 6.79 -2.91 -0.02 3.02 16 7 C 0.01 0.70 5.30 84.65 0.45 1.15 16 8 N -0.92 -53.40 11.31 21.45 0.24 -53.16 16 9 Si 0.95 44.03 29.54 68.60 2.03 46.05 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 N -0.53 -22.33 3.79 -875.51 -3.32 -25.65 16 14 C 0.05 1.82 4.87 86.32 0.42 2.24 16 15 C -0.13 -3.60 5.67 30.64 0.17 -3.43 16 16 C 0.10 2.70 2.73 44.99 0.12 2.82 16 17 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 18 N -0.84 -16.66 8.62 -168.36 -1.45 -18.11 16 19 C -0.07 -2.19 2.52 -10.74 -0.03 -2.22 16 20 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 21 C -0.13 -3.46 9.06 71.98 0.65 -2.80 16 22 C 0.07 2.87 4.55 86.33 0.39 3.26 16 23 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.04 1.75 7.12 -2.39 -0.02 1.73 16 25 H 0.05 2.10 7.28 -2.39 -0.02 2.09 16 26 H 0.03 1.26 6.31 -2.38 -0.02 1.24 16 27 H 0.06 3.38 6.02 -2.39 -0.01 3.37 16 28 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.07 2.55 5.64 -2.39 -0.01 2.54 16 31 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.35 5.58 9.04 -89.69 -0.81 4.77 16 34 H 0.34 6.29 8.98 -89.70 -0.81 5.49 16 35 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.84 7.69 -2.38 -0.02 1.82 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 2.66 6.38 -2.39 -0.02 2.64 16 39 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -59.40 293.01 0.17 -59.23 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -0.59 Total: 15.47 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 3.26 Total: -23.84 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -4.53 Total: -96.92 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -59.40 0.17 -59.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251321775.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.592 kcal (2) G-P(sol) polarization free energy of solvation -59.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds