Wall clock time and date at job start Mon Mar 30 2020 03:09:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52998 * 109.47047 * 2 1
4 4 H 1.08999 * 109.47241 * 303.20919 * 3 2 1
5 5 C 1.50706 * 109.47024 * 183.21036 * 3 2 1
6 6 H 1.08007 * 119.99893 * 240.00345 * 5 3 2
7 7 C 1.37873 * 120.00199 * 59.99963 * 5 3 2
8 8 N 1.31517 * 119.99624 * 359.97438 * 7 5 3
9 9 Si 1.86794 * 120.00230 * 180.02562 * 7 5 3
10 10 H 1.48504 * 109.46974 * 59.99698 * 9 7 5
11 11 H 1.48498 * 109.47516 * 179.97438 * 9 7 5
12 12 H 1.48499 * 109.47079 * 299.99858 * 9 7 5
13 13 N 1.46897 * 109.47191 * 63.20845 * 3 2 1
14 14 C 1.46850 * 111.00105 * 190.99645 * 13 3 2
15 15 C 1.53033 * 109.52369 * 174.16371 * 14 13 3
16 16 C 1.53112 * 109.28369 * 59.17930 * 15 14 13
17 17 H 1.09001 * 109.52332 * 62.24751 * 16 15 14
18 18 C 1.52992 * 109.52585 * 182.44106 * 16 15 14
19 19 C 1.53121 * 109.16123 * 302.34889 * 16 15 14
20 20 H 1.08999 * 109.50323 * 297.70909 * 19 16 15
21 21 N 1.46901 * 109.53941 * 177.60933 * 19 16 15
22 22 C 1.46851 * 111.00103 * 66.79030 * 13 3 2
23 23 H 1.08996 * 109.46792 * 304.77697 * 1 2 3
24 24 H 1.08994 * 109.46883 * 64.77410 * 1 2 3
25 25 H 1.08999 * 109.47253 * 184.77575 * 1 2 3
26 26 H 1.08997 * 109.46956 * 239.99691 * 2 1 3
27 27 H 1.09001 * 109.47071 * 119.99870 * 2 1 3
28 28 H 0.97007 * 119.99661 * 180.02562 * 8 7 5
29 29 H 1.09000 * 109.46360 * 294.17960 * 14 13 3
30 30 H 1.08998 * 109.45699 * 54.15829 * 14 13 3
31 31 H 1.09001 * 109.50251 * 179.13022 * 15 14 13
32 32 H 1.09004 * 109.50115 * 299.23556 * 15 14 13
33 33 H 1.09005 * 109.47286 * 179.68591 * 18 16 15
34 34 H 1.08995 * 109.47435 * 299.68390 * 18 16 15
35 35 H 1.09000 * 109.47452 * 59.68954 * 18 16 15
36 36 H 1.00892 * 111.00075 * 180.09770 * 21 19 16
37 37 H 1.00899 * 110.99910 * 304.05467 * 21 19 16
38 38 H 1.09000 * 109.46142 * 65.81914 * 22 13 3
39 39 H 1.09003 * 109.45330 * 305.85442 * 22 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6305 1.9727 -0.8598
5 6 3.5450 1.4432 -0.0796
6 1 4.1272 1.8959 0.7095
7 6 4.1785 0.8660 -1.1595
8 7 3.4695 0.3142 -2.1200
9 14 6.0439 0.8662 -1.2578
10 1 6.6014 0.1435 -0.0864
11 1 6.4739 0.1888 -2.5073
12 1 6.5394 2.2661 -1.2575
13 7 1.6147 2.1122 1.2363
14 6 1.8558 3.5588 1.1609
15 6 1.2703 4.2402 2.3998
16 6 1.9278 3.6591 3.6546
17 1 2.9973 3.8685 3.6357
18 6 1.3034 4.2928 4.8992
19 6 1.7035 2.1447 3.6841
20 1 0.6352 1.9361 3.7423
21 7 2.3798 1.5705 4.8550
22 6 2.2764 1.5241 2.4079
23 1 -0.3633 0.5862 0.8441
24 1 -0.3633 0.4380 -0.9296
25 1 -0.3634 -1.0241 0.0856
26 1 1.8933 -0.5139 -0.8899
27 1 1.8934 -0.5138 0.8900
28 1 3.9152 -0.0923 -2.8797
29 1 2.9286 3.7464 1.1161
30 1 1.3792 3.9602 0.2665
31 1 1.4630 5.3119 2.3510
32 1 0.1952 4.0646 2.4378
33 1 1.7681 3.8745 5.7921
34 1 1.4635 5.3707 4.8774
35 1 0.2335 4.0847 4.9151
36 1 2.2473 0.5712 4.8951
37 1 3.3610 1.8056 4.8571
38 1 3.3472 1.7212 2.3572
39 1 2.1055 0.4476 2.4191
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000251330037.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:09:09
Heat of formation + Delta-G solvation = -16.642959 kcal
Electronic energy + Delta-G solvation = -17045.723369 eV
Core-core repulsion = 14601.151131 eV
Total energy + Delta-G solvation = -2444.572237 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-38.90933 -35.59024 -32.96936 -32.20503 -31.06754 -28.21904 -27.24630 -25.53481
-23.04000 -22.15260 -21.15561 -19.48618 -18.99533 -16.35847 -15.51975 -15.36067
-14.48744 -14.15566 -14.00543 -13.58219 -13.13707 -12.83065 -12.78165 -12.29201
-11.81859 -11.65947 -11.58156 -11.34078 -11.15061 -10.91191 -10.74628 -10.62688
-10.34744 -10.26377 -9.91863 -9.88307 -9.64858 -9.29178 -9.12067 -8.41223
-8.27909 -7.11256 -6.00926 -4.14541 3.24425 3.30202 3.32247 4.36484
4.79030 5.07711 5.20287 5.22743 5.30012 5.56450 5.81437 5.90210
5.99576 6.04897 6.08896 6.17667 6.30334 6.37723 6.48034 6.50942
6.54010 6.60717 6.66455 6.71435 6.76073 6.91628 7.11154 7.18100
7.33825 7.42429 7.59419 7.70645 7.75617 7.98233 8.14779 8.32652
8.47720 8.95681 9.52897 10.98103
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.026677 B = 0.009158 C = 0.008178
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1049.342281 B = 3056.821070 C = 3423.189758
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.109 4.109
3 C 0.214 3.786
4 H 0.037 0.963
5 C -0.543 4.543
6 H 0.054 0.946
7 C 0.068 3.932
8 N -0.885 5.885
9 Si 0.886 3.114
10 H -0.279 1.279
11 H -0.286 1.286
12 H -0.278 1.278
13 N -0.529 5.529
14 C 0.062 3.938
15 C -0.110 4.110
16 C -0.082 4.082
17 H 0.059 0.941
18 C -0.135 4.135
19 C 0.094 3.906
20 H 0.080 0.920
21 N -0.843 5.843
22 C 0.035 3.965
23 H 0.050 0.950
24 H 0.037 0.963
25 H 0.024 0.976
26 H 0.091 0.909
27 H 0.030 0.970
28 H 0.262 0.738
29 H 0.032 0.968
30 H 0.062 0.938
31 H 0.056 0.944
32 H 0.064 0.936
33 H 0.061 0.939
34 H 0.041 0.959
35 H 0.048 0.952
36 H 0.337 0.663
37 H 0.334 0.666
38 H 0.034 0.966
39 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.166 3.766 8.959 10.220
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.147 4.147
3 C 0.107 3.893
4 H 0.055 0.945
5 C -0.582 4.582
6 H 0.072 0.928
7 C -0.134 4.134
8 N -0.523 5.523
9 Si 0.714 3.286
10 H -0.204 1.204
11 H -0.212 1.212
12 H -0.204 1.204
13 N -0.254 5.254
14 C -0.067 4.067
15 C -0.149 4.149
16 C -0.101 4.101
17 H 0.078 0.922
18 C -0.192 4.192
19 C -0.018 4.018
20 H 0.098 0.902
21 N -0.370 5.370
22 C -0.096 4.096
23 H 0.069 0.931
24 H 0.057 0.943
25 H 0.043 0.957
26 H 0.109 0.891
27 H 0.049 0.951
28 H 0.072 0.928
29 H 0.050 0.950
30 H 0.081 0.919
31 H 0.075 0.925
32 H 0.083 0.917
33 H 0.080 0.920
34 H 0.061 0.939
35 H 0.067 0.933
36 H 0.149 0.851
37 H 0.145 0.855
38 H 0.052 0.948
39 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -4.162 4.054 9.258 10.930
hybrid contribution 2.644 -0.514 -1.066 2.897
sum -1.518 3.540 8.192 9.053
Atomic orbital electron populations
1.21720 0.98845 0.98480 1.00628 1.21576 0.92230 0.99191 1.01740
1.19260 0.92692 0.91099 0.86233 0.94487 1.21696 0.92799 1.37655
1.06065 0.92777 1.24910 0.97858 0.95080 0.95585 1.69867 1.34996
1.37734 1.09740 0.86752 0.86272 0.78176 0.77354 1.20433 1.21179
1.20394 1.62357 1.56954 1.01891 1.04162 1.21864 0.98522 0.89825
0.96477 1.21664 1.00487 0.98340 0.94367 1.21125 0.99546 0.94539
0.94904 0.92213 1.21696 1.00487 0.98915 0.98092 1.21582 0.98823
0.93561 0.87826 0.90218 1.59113 1.17763 1.17026 1.43136 1.22726
0.96823 0.99028 0.90997 0.93076 0.94334 0.95671 0.89099 0.95146
0.92829 0.94976 0.91901 0.92491 0.91739 0.92038 0.93944 0.93273
0.85094 0.85451 0.94771 0.91616
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.84 9.85 37.16 0.37 -2.48 16
2 C -0.11 -2.57 5.14 -26.73 -0.14 -2.71 16
3 C 0.21 5.21 1.72 -68.86 -0.12 5.09 16
4 H 0.04 1.01 7.97 -51.93 -0.41 0.60 16
5 C -0.54 -14.38 7.24 -34.44 -0.25 -14.63 16
6 H 0.05 1.45 5.84 -52.48 -0.31 1.14 16
7 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16
8 N -0.89 -24.78 11.30 55.43 0.63 -24.15 16
9 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16
10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16
12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
13 N -0.53 -10.94 3.89 -228.08 -0.89 -11.83 16
14 C 0.06 1.18 5.20 -3.83 -0.02 1.16 16
15 C -0.11 -1.71 5.38 -26.66 -0.14 -1.85 16
16 C -0.08 -1.22 2.42 -90.50 -0.22 -1.44 16
17 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
18 C -0.13 -1.74 9.07 37.15 0.34 -1.40 16
19 C 0.09 1.47 2.83 -67.63 -0.19 1.28 16
20 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16
21 N -0.84 -11.41 8.61 -4.60 -0.04 -11.45 16
22 C 0.03 0.66 4.34 -3.83 -0.02 0.65 16
23 H 0.05 1.01 7.56 -51.93 -0.39 0.62 16
24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16
25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16
26 H 0.09 2.40 5.99 -51.93 -0.31 2.09 16
27 H 0.03 0.71 6.33 -51.93 -0.33 0.38 16
28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16
29 H 0.03 0.67 7.36 -51.93 -0.38 0.29 16
30 H 0.06 1.22 8.00 -51.93 -0.42 0.80 16
31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
33 H 0.06 0.80 7.69 -51.93 -0.40 0.40 16
34 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16
35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16
36 H 0.34 4.25 9.04 -39.30 -0.36 3.90 16
37 H 0.33 4.36 8.98 -39.29 -0.35 4.01 16
38 H 0.03 0.72 6.33 -51.93 -0.33 0.39 16
39 H 0.07 1.31 6.20 -51.93 -0.32 0.99 16
LS Contribution 293.88 15.07 4.43 4.43
Total: -1.00 -26.75 293.88 -8.21 -34.95
By element:
Atomic # 1 Polarization: 13.41 SS G_CDS: -6.83 Total: 6.59 kcal
Atomic # 6 Polarization: -14.09 SS G_CDS: -0.49 Total: -14.58 kcal
Atomic # 7 Polarization: -47.13 SS G_CDS: -0.30 Total: -47.43 kcal
Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal
Total LS contribution 4.43 Total: 4.43 kcal
Total: -26.75 -8.21 -34.95 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000251330037.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.311 kcal
(2) G-P(sol) polarization free energy of solvation -26.748 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.438 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.953 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.643 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds