Wall clock time and date at job start Mon Mar 30 2020 03:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47047 * 2 1 4 4 H 1.08999 * 109.47241 * 303.20919 * 3 2 1 5 5 C 1.50706 * 109.47024 * 183.21036 * 3 2 1 6 6 H 1.08007 * 119.99893 * 240.00345 * 5 3 2 7 7 C 1.37873 * 120.00199 * 59.99963 * 5 3 2 8 8 N 1.31517 * 119.99624 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00230 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46974 * 59.99698 * 9 7 5 11 11 H 1.48498 * 109.47516 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47079 * 299.99858 * 9 7 5 13 13 N 1.46897 * 109.47191 * 63.20845 * 3 2 1 14 14 C 1.46850 * 111.00105 * 190.99645 * 13 3 2 15 15 C 1.53033 * 109.52369 * 174.16371 * 14 13 3 16 16 C 1.53112 * 109.28369 * 59.17930 * 15 14 13 17 17 H 1.09001 * 109.52332 * 62.24751 * 16 15 14 18 18 C 1.52992 * 109.52585 * 182.44106 * 16 15 14 19 19 C 1.53121 * 109.16123 * 302.34889 * 16 15 14 20 20 H 1.08999 * 109.50323 * 297.70909 * 19 16 15 21 21 N 1.46901 * 109.53941 * 177.60933 * 19 16 15 22 22 C 1.46851 * 111.00103 * 66.79030 * 13 3 2 23 23 H 1.08996 * 109.46792 * 304.77697 * 1 2 3 24 24 H 1.08994 * 109.46883 * 64.77410 * 1 2 3 25 25 H 1.08999 * 109.47253 * 184.77575 * 1 2 3 26 26 H 1.08997 * 109.46956 * 239.99691 * 2 1 3 27 27 H 1.09001 * 109.47071 * 119.99870 * 2 1 3 28 28 H 0.97007 * 119.99661 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.46360 * 294.17960 * 14 13 3 30 30 H 1.08998 * 109.45699 * 54.15829 * 14 13 3 31 31 H 1.09001 * 109.50251 * 179.13022 * 15 14 13 32 32 H 1.09004 * 109.50115 * 299.23556 * 15 14 13 33 33 H 1.09005 * 109.47286 * 179.68591 * 18 16 15 34 34 H 1.08995 * 109.47435 * 299.68390 * 18 16 15 35 35 H 1.09000 * 109.47452 * 59.68954 * 18 16 15 36 36 H 1.00892 * 111.00075 * 180.09770 * 21 19 16 37 37 H 1.00899 * 110.99910 * 304.05467 * 21 19 16 38 38 H 1.09000 * 109.46142 * 65.81914 * 22 13 3 39 39 H 1.09003 * 109.45330 * 305.85442 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6305 1.9727 -0.8598 5 6 3.5450 1.4432 -0.0796 6 1 4.1272 1.8959 0.7095 7 6 4.1785 0.8660 -1.1595 8 7 3.4695 0.3142 -2.1200 9 14 6.0439 0.8662 -1.2578 10 1 6.6014 0.1435 -0.0864 11 1 6.4739 0.1888 -2.5073 12 1 6.5394 2.2661 -1.2575 13 7 1.6147 2.1122 1.2363 14 6 1.8558 3.5588 1.1609 15 6 1.2703 4.2402 2.3998 16 6 1.9278 3.6591 3.6546 17 1 2.9973 3.8685 3.6357 18 6 1.3034 4.2928 4.8992 19 6 1.7035 2.1447 3.6841 20 1 0.6352 1.9361 3.7423 21 7 2.3798 1.5705 4.8550 22 6 2.2764 1.5241 2.4079 23 1 -0.3633 0.5862 0.8441 24 1 -0.3633 0.4380 -0.9296 25 1 -0.3634 -1.0241 0.0856 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.9152 -0.0923 -2.8797 29 1 2.9286 3.7464 1.1161 30 1 1.3792 3.9602 0.2665 31 1 1.4630 5.3119 2.3510 32 1 0.1952 4.0646 2.4378 33 1 1.7681 3.8745 5.7921 34 1 1.4635 5.3707 4.8774 35 1 0.2335 4.0847 4.9151 36 1 2.2473 0.5712 4.8951 37 1 3.3610 1.8056 4.8571 38 1 3.3472 1.7212 2.3572 39 1 2.1055 0.4476 2.4191 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251330037.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:08 Heat of formation + Delta-G solvation = -34.223688 kcal Electronic energy + Delta-G solvation = -17046.485726 eV Core-core repulsion = 14601.151131 eV Total energy + Delta-G solvation = -2445.334595 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.41124 -37.22429 -34.53046 -33.87193 -32.75160 -29.63064 -28.89243 -27.20180 -24.83540 -23.54050 -22.65641 -21.03375 -20.68958 -18.34022 -17.19239 -16.64667 -16.24801 -15.64347 -15.43898 -15.25475 -14.65560 -14.51452 -14.26015 -13.70698 -13.35607 -13.23742 -13.08264 -12.96559 -12.84455 -12.60259 -12.48364 -12.14438 -12.00952 -11.75424 -11.59868 -11.44521 -11.28223 -11.01860 -10.90065 -10.46415 -9.54897 -8.92119 -8.05748 -6.28969 1.33719 1.34662 1.41896 2.36125 3.11596 3.35926 3.74970 3.90180 4.03369 4.26576 4.39615 4.52905 4.58041 4.63656 4.73792 4.79153 4.88764 4.90779 4.92951 5.01234 5.11917 5.18269 5.20623 5.28272 5.34401 5.41355 5.48755 5.52611 5.58234 5.63978 5.77212 6.02979 6.16727 6.25956 6.37702 6.61362 6.71340 6.93051 7.41817 8.88572 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026677 B = 0.009158 C = 0.008178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.342281 B = 3056.821070 C = 3423.189758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.551 4.551 6 H 0.046 0.954 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.945 3.055 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.276 1.276 13 N -0.525 5.525 14 C 0.061 3.939 15 C -0.100 4.100 16 C -0.081 4.081 17 H 0.052 0.948 18 C -0.125 4.125 19 C 0.107 3.893 20 H 0.079 0.921 21 N -0.833 5.833 22 C 0.042 3.958 23 H 0.058 0.942 24 H 0.032 0.968 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.028 0.972 28 H 0.262 0.738 29 H 0.009 0.991 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.344 0.656 37 H 0.339 0.661 38 H 0.010 0.990 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.427 4.356 10.697 12.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.590 4.590 6 H 0.065 0.935 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.771 3.229 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.202 1.202 13 N -0.249 5.249 14 C -0.068 4.068 15 C -0.138 4.138 16 C -0.100 4.100 17 H 0.070 0.930 18 C -0.182 4.182 19 C -0.006 4.006 20 H 0.097 0.903 21 N -0.361 5.361 22 C -0.089 4.089 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.157 0.843 37 H 0.151 0.849 38 H 0.028 0.972 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.423 4.647 11.019 12.751 hybrid contribution 2.728 -0.694 -1.612 3.244 sum -1.695 3.953 9.407 10.344 Atomic orbital electron populations 1.21577 0.96185 0.99983 1.00665 1.21411 0.94558 0.98153 1.00059 1.19040 0.91498 0.91524 0.86809 0.98056 1.21926 0.94072 1.37226 1.05802 0.93537 1.25613 1.01872 0.94984 0.95434 1.69995 1.36429 1.38372 1.10129 0.85824 0.81503 0.78137 0.77441 1.19966 1.20726 1.20156 1.62327 1.56685 1.02654 1.03240 1.21926 0.97302 0.89134 0.98409 1.21604 1.00537 0.99149 0.92519 1.21116 0.99269 0.93883 0.95697 0.92995 1.21603 1.00438 0.99628 0.96580 1.21428 0.98553 0.94160 0.86417 0.90305 1.59105 1.18045 1.17621 1.41302 1.22758 0.95469 0.98597 0.92033 0.92250 0.94859 0.93529 0.92114 0.95342 0.92891 0.97296 0.92807 0.90336 0.91019 0.91907 0.92477 0.92835 0.84303 0.84923 0.97161 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 9.85 71.98 0.71 -4.38 16 2 C -0.10 -4.95 5.14 30.60 0.16 -4.80 16 3 C 0.22 10.96 1.72 44.17 0.08 11.03 16 4 H 0.00 0.09 7.97 -2.39 -0.02 0.07 16 5 C -0.55 -29.92 7.24 25.60 0.19 -29.73 16 6 H 0.05 2.55 5.84 -2.91 -0.02 2.53 16 7 C 0.02 1.15 5.30 84.65 0.45 1.60 16 8 N -0.91 -52.16 11.30 21.45 0.24 -51.91 16 9 Si 0.94 43.70 29.54 68.60 2.03 45.73 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 N -0.53 -21.84 3.89 -875.50 -3.41 -25.25 16 14 C 0.06 2.34 5.20 86.32 0.45 2.79 16 15 C -0.10 -2.90 5.38 30.64 0.16 -2.73 16 16 C -0.08 -2.21 2.42 -10.72 -0.03 -2.24 16 17 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 18 C -0.13 -2.80 9.07 71.98 0.65 -2.15 16 19 C 0.11 3.15 2.83 44.97 0.13 3.28 16 20 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 21 N -0.83 -20.79 8.61 -168.46 -1.45 -22.24 16 22 C 0.04 1.59 4.34 86.32 0.38 1.97 16 23 H 0.06 2.27 7.56 -2.39 -0.02 2.25 16 24 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.06 3.30 5.99 -2.39 -0.01 3.28 16 27 H 0.03 1.34 6.33 -2.39 -0.02 1.32 16 28 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 29 H 0.01 0.37 7.36 -2.39 -0.02 0.36 16 30 H 0.05 2.12 8.00 -2.39 -0.02 2.10 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.06 1.41 7.69 -2.38 -0.02 1.39 16 34 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.34 7.98 9.04 -89.70 -0.81 7.17 16 37 H 0.34 8.20 8.98 -89.69 -0.81 7.39 16 38 H 0.01 0.44 6.33 -2.39 -0.02 0.42 16 39 H 0.05 2.15 6.20 -2.39 -0.01 2.13 16 Total: -1.00 -57.79 293.88 0.14 -57.65 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -0.59 Total: 21.40 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 3.32 Total: -25.37 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -4.62 Total: -99.40 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -57.79 0.14 -57.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251330037.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.424 kcal (2) G-P(sol) polarization free energy of solvation -57.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds