Wall clock time and date at job start Mon Mar 30 2020 03:09:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52998 * 109.47047 * 2 1
4 4 H 1.08999 * 109.47241 * 303.20919 * 3 2 1
5 5 C 1.50706 * 109.47024 * 183.21036 * 3 2 1
6 6 H 1.08007 * 119.99893 * 240.00345 * 5 3 2
7 7 C 1.37873 * 120.00199 * 59.99963 * 5 3 2
8 8 N 1.31517 * 119.99624 * 359.97438 * 7 5 3
9 9 Si 1.86794 * 120.00230 * 180.02562 * 7 5 3
10 10 H 1.48504 * 109.46974 * 59.99698 * 9 7 5
11 11 H 1.48498 * 109.47516 * 179.97438 * 9 7 5
12 12 H 1.48499 * 109.47079 * 299.99858 * 9 7 5
13 13 N 1.46897 * 109.47191 * 63.20845 * 3 2 1
14 14 C 1.46850 * 111.00105 * 190.99645 * 13 3 2
15 15 C 1.53033 * 109.52369 * 174.16371 * 14 13 3
16 16 C 1.53112 * 109.28369 * 59.17930 * 15 14 13
17 17 H 1.09001 * 109.52332 * 62.24751 * 16 15 14
18 18 C 1.52992 * 109.52585 * 182.44106 * 16 15 14
19 19 C 1.53121 * 109.16123 * 302.34889 * 16 15 14
20 20 H 1.08999 * 109.50323 * 297.70909 * 19 16 15
21 21 N 1.46901 * 109.53941 * 177.60933 * 19 16 15
22 22 C 1.46851 * 111.00103 * 66.79030 * 13 3 2
23 23 H 1.08996 * 109.46792 * 304.77697 * 1 2 3
24 24 H 1.08994 * 109.46883 * 64.77410 * 1 2 3
25 25 H 1.08999 * 109.47253 * 184.77575 * 1 2 3
26 26 H 1.08997 * 109.46956 * 239.99691 * 2 1 3
27 27 H 1.09001 * 109.47071 * 119.99870 * 2 1 3
28 28 H 0.97007 * 119.99661 * 180.02562 * 8 7 5
29 29 H 1.09000 * 109.46360 * 294.17960 * 14 13 3
30 30 H 1.08998 * 109.45699 * 54.15829 * 14 13 3
31 31 H 1.09001 * 109.50251 * 179.13022 * 15 14 13
32 32 H 1.09004 * 109.50115 * 299.23556 * 15 14 13
33 33 H 1.09005 * 109.47286 * 179.68591 * 18 16 15
34 34 H 1.08995 * 109.47435 * 299.68390 * 18 16 15
35 35 H 1.09000 * 109.47452 * 59.68954 * 18 16 15
36 36 H 1.00892 * 111.00075 * 180.09770 * 21 19 16
37 37 H 1.00899 * 110.99910 * 304.05467 * 21 19 16
38 38 H 1.09000 * 109.46142 * 65.81914 * 22 13 3
39 39 H 1.09003 * 109.45330 * 305.85442 * 22 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6305 1.9727 -0.8598
5 6 3.5450 1.4432 -0.0796
6 1 4.1272 1.8959 0.7095
7 6 4.1785 0.8660 -1.1595
8 7 3.4695 0.3142 -2.1200
9 14 6.0439 0.8662 -1.2578
10 1 6.6014 0.1435 -0.0864
11 1 6.4739 0.1888 -2.5073
12 1 6.5394 2.2661 -1.2575
13 7 1.6147 2.1122 1.2363
14 6 1.8558 3.5588 1.1609
15 6 1.2703 4.2402 2.3998
16 6 1.9278 3.6591 3.6546
17 1 2.9973 3.8685 3.6357
18 6 1.3034 4.2928 4.8992
19 6 1.7035 2.1447 3.6841
20 1 0.6352 1.9361 3.7423
21 7 2.3798 1.5705 4.8550
22 6 2.2764 1.5241 2.4079
23 1 -0.3633 0.5862 0.8441
24 1 -0.3633 0.4380 -0.9296
25 1 -0.3634 -1.0241 0.0856
26 1 1.8933 -0.5139 -0.8899
27 1 1.8934 -0.5138 0.8900
28 1 3.9152 -0.0923 -2.8797
29 1 2.9286 3.7464 1.1161
30 1 1.3792 3.9602 0.2665
31 1 1.4630 5.3119 2.3510
32 1 0.1952 4.0646 2.4378
33 1 1.7681 3.8745 5.7921
34 1 1.4635 5.3707 4.8774
35 1 0.2335 4.0847 4.9151
36 1 2.2473 0.5712 4.8951
37 1 3.3610 1.8056 4.8571
38 1 3.3472 1.7212 2.3572
39 1 2.1055 0.4476 2.4191
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000251330037.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:09:08
Heat of formation + Delta-G solvation = -34.223688 kcal
Electronic energy + Delta-G solvation = -17046.485726 eV
Core-core repulsion = 14601.151131 eV
Total energy + Delta-G solvation = -2445.334595 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.41124 -37.22429 -34.53046 -33.87193 -32.75160 -29.63064 -28.89243 -27.20180
-24.83540 -23.54050 -22.65641 -21.03375 -20.68958 -18.34022 -17.19239 -16.64667
-16.24801 -15.64347 -15.43898 -15.25475 -14.65560 -14.51452 -14.26015 -13.70698
-13.35607 -13.23742 -13.08264 -12.96559 -12.84455 -12.60259 -12.48364 -12.14438
-12.00952 -11.75424 -11.59868 -11.44521 -11.28223 -11.01860 -10.90065 -10.46415
-9.54897 -8.92119 -8.05748 -6.28969 1.33719 1.34662 1.41896 2.36125
3.11596 3.35926 3.74970 3.90180 4.03369 4.26576 4.39615 4.52905
4.58041 4.63656 4.73792 4.79153 4.88764 4.90779 4.92951 5.01234
5.11917 5.18269 5.20623 5.28272 5.34401 5.41355 5.48755 5.52611
5.58234 5.63978 5.77212 6.02979 6.16727 6.25956 6.37702 6.61362
6.71340 6.93051 7.41817 8.88572
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.026677 B = 0.009158 C = 0.008178
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1049.342281 B = 3056.821070 C = 3423.189758
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.103 4.103
3 C 0.219 3.781
4 H 0.002 0.998
5 C -0.551 4.551
6 H 0.046 0.954
7 C 0.021 3.979
8 N -0.910 5.910
9 Si 0.945 3.055
10 H -0.274 1.274
11 H -0.282 1.282
12 H -0.276 1.276
13 N -0.525 5.525
14 C 0.061 3.939
15 C -0.100 4.100
16 C -0.081 4.081
17 H 0.052 0.948
18 C -0.125 4.125
19 C 0.107 3.893
20 H 0.079 0.921
21 N -0.833 5.833
22 C 0.042 3.958
23 H 0.058 0.942
24 H 0.032 0.968
25 H 0.046 0.954
26 H 0.060 0.940
27 H 0.028 0.972
28 H 0.262 0.738
29 H 0.009 0.991
30 H 0.053 0.947
31 H 0.078 0.922
32 H 0.071 0.929
33 H 0.062 0.938
34 H 0.056 0.944
35 H 0.053 0.947
36 H 0.344 0.656
37 H 0.339 0.661
38 H 0.010 0.990
39 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.427 4.356 10.697 12.048
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.142 4.142
3 C 0.111 3.889
4 H 0.019 0.981
5 C -0.590 4.590
6 H 0.065 0.935
7 C -0.179 4.179
8 N -0.549 5.549
9 Si 0.771 3.229
10 H -0.200 1.200
11 H -0.207 1.207
12 H -0.202 1.202
13 N -0.249 5.249
14 C -0.068 4.068
15 C -0.138 4.138
16 C -0.100 4.100
17 H 0.070 0.930
18 C -0.182 4.182
19 C -0.006 4.006
20 H 0.097 0.903
21 N -0.361 5.361
22 C -0.089 4.089
23 H 0.077 0.923
24 H 0.051 0.949
25 H 0.065 0.935
26 H 0.079 0.921
27 H 0.047 0.953
28 H 0.071 0.929
29 H 0.027 0.973
30 H 0.072 0.928
31 H 0.097 0.903
32 H 0.090 0.910
33 H 0.081 0.919
34 H 0.075 0.925
35 H 0.072 0.928
36 H 0.157 0.843
37 H 0.151 0.849
38 H 0.028 0.972
39 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -4.423 4.647 11.019 12.751
hybrid contribution 2.728 -0.694 -1.612 3.244
sum -1.695 3.953 9.407 10.344
Atomic orbital electron populations
1.21577 0.96185 0.99983 1.00665 1.21411 0.94558 0.98153 1.00059
1.19040 0.91498 0.91524 0.86809 0.98056 1.21926 0.94072 1.37226
1.05802 0.93537 1.25613 1.01872 0.94984 0.95434 1.69995 1.36429
1.38372 1.10129 0.85824 0.81503 0.78137 0.77441 1.19966 1.20726
1.20156 1.62327 1.56685 1.02654 1.03240 1.21926 0.97302 0.89134
0.98409 1.21604 1.00537 0.99149 0.92519 1.21116 0.99269 0.93883
0.95697 0.92995 1.21603 1.00438 0.99628 0.96580 1.21428 0.98553
0.94160 0.86417 0.90305 1.59105 1.18045 1.17621 1.41302 1.22758
0.95469 0.98597 0.92033 0.92250 0.94859 0.93529 0.92114 0.95342
0.92891 0.97296 0.92807 0.90336 0.91019 0.91907 0.92477 0.92835
0.84303 0.84923 0.97161 0.92798
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.09 9.85 71.98 0.71 -4.38 16
2 C -0.10 -4.95 5.14 30.60 0.16 -4.80 16
3 C 0.22 10.96 1.72 44.17 0.08 11.03 16
4 H 0.00 0.09 7.97 -2.39 -0.02 0.07 16
5 C -0.55 -29.92 7.24 25.60 0.19 -29.73 16
6 H 0.05 2.55 5.84 -2.91 -0.02 2.53 16
7 C 0.02 1.15 5.30 84.65 0.45 1.60 16
8 N -0.91 -52.16 11.30 21.45 0.24 -51.91 16
9 Si 0.94 43.70 29.54 68.60 2.03 45.73 16
10 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16
11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16
12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16
13 N -0.53 -21.84 3.89 -875.50 -3.41 -25.25 16
14 C 0.06 2.34 5.20 86.32 0.45 2.79 16
15 C -0.10 -2.90 5.38 30.64 0.16 -2.73 16
16 C -0.08 -2.21 2.42 -10.72 -0.03 -2.24 16
17 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16
18 C -0.13 -2.80 9.07 71.98 0.65 -2.15 16
19 C 0.11 3.15 2.83 44.97 0.13 3.28 16
20 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16
21 N -0.83 -20.79 8.61 -168.46 -1.45 -22.24 16
22 C 0.04 1.59 4.34 86.32 0.38 1.97 16
23 H 0.06 2.27 7.56 -2.39 -0.02 2.25 16
24 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16
25 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16
26 H 0.06 3.30 5.99 -2.39 -0.01 3.28 16
27 H 0.03 1.34 6.33 -2.39 -0.02 1.32 16
28 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16
29 H 0.01 0.37 7.36 -2.39 -0.02 0.36 16
30 H 0.05 2.12 8.00 -2.39 -0.02 2.10 16
31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16
32 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16
33 H 0.06 1.41 7.69 -2.38 -0.02 1.39 16
34 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
35 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16
36 H 0.34 7.98 9.04 -89.70 -0.81 7.17 16
37 H 0.34 8.20 8.98 -89.69 -0.81 7.39 16
38 H 0.01 0.44 6.33 -2.39 -0.02 0.42 16
39 H 0.05 2.15 6.20 -2.39 -0.01 2.13 16
Total: -1.00 -57.79 293.88 0.14 -57.65
By element:
Atomic # 1 Polarization: 21.99 SS G_CDS: -0.59 Total: 21.40 kcal
Atomic # 6 Polarization: -28.69 SS G_CDS: 3.32 Total: -25.37 kcal
Atomic # 7 Polarization: -94.79 SS G_CDS: -4.62 Total: -99.40 kcal
Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal
Total: -57.79 0.14 -57.65 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000251330037.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.424 kcal
(2) G-P(sol) polarization free energy of solvation -57.786 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.363 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.647 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.224 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds