Wall clock time and date at job start Mon Mar 30 2020 03:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47282 * 2 1 4 4 H 1.08998 * 109.50362 * 54.91993 * 3 2 1 5 5 C 1.53042 * 109.50104 * 294.80371 * 3 2 1 6 6 N 1.46854 * 109.52282 * 180.87812 * 5 3 2 7 7 C 1.46894 * 110.99774 * 185.84011 * 6 5 3 8 8 H 1.08998 * 109.46828 * 171.84293 * 7 6 5 9 9 C 1.52997 * 109.47515 * 51.83729 * 7 6 5 10 10 C 1.50706 * 109.47162 * 291.83322 * 7 6 5 11 11 H 1.07998 * 119.99629 * 0.02562 * 10 7 6 12 12 C 1.37875 * 119.99955 * 179.97438 * 10 7 6 13 13 N 1.31510 * 120.00308 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99908 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47233 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46997 * 120.00173 * 14 12 10 17 17 H 1.48501 * 109.47364 * 240.00497 * 14 12 10 18 18 C 1.46846 * 111.19683 * 61.74212 * 6 5 3 19 19 C 1.53043 * 109.52391 * 298.25964 * 18 6 5 20 20 C 1.53116 * 109.28128 * 59.17718 * 19 18 6 21 21 H 1.08995 * 109.52764 * 182.37886 * 20 19 18 22 22 N 1.46899 * 109.52350 * 62.25042 * 20 19 18 23 23 H 1.09002 * 109.47165 * 59.99757 * 1 2 3 24 24 H 1.08994 * 109.47035 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46657 * 300.00357 * 1 2 3 26 26 H 1.09001 * 109.47366 * 239.99868 * 2 1 3 27 27 H 1.09000 * 109.47184 * 119.99458 * 2 1 3 28 28 H 1.09002 * 109.46476 * 60.86463 * 5 3 2 29 29 H 1.08993 * 109.46438 * 300.89484 * 5 3 2 30 30 H 1.09002 * 109.47153 * 59.99762 * 9 7 6 31 31 H 1.09001 * 109.46832 * 299.99953 * 9 7 6 32 32 H 1.09004 * 109.47261 * 179.97438 * 9 7 6 33 33 H 0.96998 * 120.00365 * 179.97438 * 13 12 10 34 34 H 1.09001 * 109.46411 * 58.27022 * 18 6 5 35 35 H 1.08996 * 109.46339 * 178.24579 * 18 6 5 36 36 H 1.08992 * 109.50462 * 179.12215 * 19 18 6 37 37 H 1.08998 * 109.50049 * 299.19892 * 19 18 6 38 38 H 1.00909 * 110.99918 * 59.99748 * 22 20 19 39 39 H 1.00899 * 111.00584 * 183.95249 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6047 1.9824 0.8408 5 6 1.6398 2.1259 -1.3095 6 7 2.1472 3.5040 -1.3190 7 6 1.6649 4.2344 -2.4987 8 1 1.9331 5.2870 -2.4089 9 6 0.1437 4.1019 -2.5939 10 6 2.2979 3.6589 -3.7394 11 1 2.9891 2.8328 -3.6594 12 6 1.9940 4.1862 -4.9765 13 7 1.1520 5.1918 -5.0738 14 14 2.7781 3.4724 -6.5144 15 1 3.6811 2.3556 -6.1369 16 1 1.7170 2.9655 -7.4212 17 1 3.5590 4.5283 -7.2076 18 6 3.6137 3.5303 -1.2469 19 6 4.0729 2.8888 0.0645 20 6 3.5661 1.4452 0.1258 21 1 3.8549 0.9978 1.0768 22 7 4.1509 0.6723 -0.9780 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 0.5532 2.1384 -1.3954 29 1 2.0640 1.5769 -2.1501 30 1 -0.3142 4.5182 -1.6966 31 1 -0.1244 3.0492 -2.6837 32 1 -0.2142 4.6443 -3.4691 33 1 0.9384 5.5630 -5.9441 34 1 4.0287 2.9747 -2.0878 35 1 3.9608 4.5627 -1.2871 36 1 5.1618 2.8944 0.1107 37 1 3.6700 3.4525 0.9060 38 1 5.1583 0.6639 -0.9196 39 1 3.7820 -0.2666 -0.9974 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251914103.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:31 Heat of formation + Delta-G solvation = -28.660995 kcal Electronic energy + Delta-G solvation = -17153.619799 eV Core-core repulsion = 14708.526421 eV Total energy + Delta-G solvation = -2445.093379 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.47417 -37.09126 -34.67523 -34.20506 -31.74106 -29.81647 -28.97029 -27.23127 -25.23076 -24.25205 -21.80642 -21.34577 -19.89641 -18.13680 -17.24447 -16.77232 -16.33117 -15.80389 -15.49960 -14.96674 -14.70413 -14.54328 -14.12669 -13.78348 -13.66317 -13.23245 -12.94911 -12.87970 -12.63154 -12.46130 -12.38045 -12.12829 -11.93577 -11.83725 -11.70804 -11.41676 -11.17310 -10.91793 -10.76231 -10.44167 -9.41293 -8.74304 -7.98374 -6.21251 1.36064 1.38566 1.49978 2.42471 3.18420 3.49052 3.80045 3.90869 3.99584 4.20037 4.37202 4.49950 4.63666 4.66166 4.75807 4.85285 4.92593 4.94965 5.03233 5.06485 5.14655 5.17164 5.20063 5.27836 5.30315 5.39988 5.48842 5.52208 5.60581 5.67000 5.75891 6.04471 6.28314 6.43730 6.49578 6.76855 6.82081 7.01732 7.49356 8.95872 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.026917 B = 0.009146 C = 0.008651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.969757 B = 3060.657536 C = 3235.830424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.077 4.077 4 H 0.071 0.929 5 C 0.083 3.917 6 N -0.540 5.540 7 C 0.209 3.791 8 H -0.001 1.001 9 C -0.120 4.120 10 C -0.536 4.536 11 H 0.051 0.949 12 C 0.016 3.984 13 N -0.917 5.917 14 Si 0.948 3.052 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.281 1.281 18 C 0.074 3.926 19 C -0.103 4.103 20 C 0.103 3.897 21 H 0.051 0.949 22 N -0.853 5.853 23 H 0.038 0.962 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.019 0.981 30 H 0.026 0.974 31 H 0.031 0.969 32 H 0.058 0.942 33 H 0.260 0.740 34 H 0.029 0.971 35 H 0.035 0.965 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.344 0.656 39 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 -10.280 10.938 15.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.096 4.096 4 H 0.089 0.911 5 C -0.046 4.046 6 N -0.264 5.264 7 C 0.101 3.899 8 H 0.017 0.983 9 C -0.178 4.178 10 C -0.575 4.575 11 H 0.070 0.930 12 C -0.183 4.183 13 N -0.557 5.557 14 Si 0.774 3.226 15 H -0.197 1.197 16 H -0.206 1.206 17 H -0.207 1.207 18 C -0.054 4.054 19 C -0.142 4.142 20 C -0.008 4.008 21 H 0.068 0.932 22 N -0.387 5.387 23 H 0.058 0.942 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.158 0.842 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.668 -9.377 10.761 14.520 hybrid contribution 0.913 -0.784 -1.292 1.765 sum 3.580 -10.161 9.469 14.343 Atomic orbital electron populations 1.21780 0.95767 1.01834 1.01463 1.21490 0.96235 0.95192 1.02035 1.21287 0.94716 0.96226 0.97368 0.91082 1.21812 0.98171 0.88389 0.96191 1.62397 1.09046 1.14459 1.40454 1.19033 0.92405 0.92222 0.86210 0.98321 1.21669 0.97482 0.99120 0.99526 1.21967 1.25764 1.16813 0.93001 0.93046 1.25646 0.95650 0.95351 1.01657 1.70015 1.35461 1.25628 1.24606 0.85665 0.78434 0.78364 0.80114 1.19733 1.20645 1.20738 1.21671 0.88642 0.97952 0.97144 1.21621 1.00095 0.95423 0.97020 1.21281 0.93980 0.93508 0.92005 0.93150 1.58609 1.11250 1.19759 1.49055 0.94245 0.91587 0.92412 0.92155 0.90449 0.92829 0.96246 0.95474 0.94980 0.92334 0.93068 0.95321 0.94601 0.90918 0.91256 0.84227 0.84051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.67 71.98 0.70 -2.85 16 2 C -0.11 -2.62 4.87 30.60 0.15 -2.47 16 3 C -0.08 -2.26 2.17 -10.74 -0.02 -2.28 16 4 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 5 C 0.08 3.26 3.61 86.33 0.31 3.57 16 6 N -0.54 -24.03 4.71 -875.50 -4.12 -28.16 16 7 C 0.21 11.09 2.49 44.17 0.11 11.20 16 8 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 9 C -0.12 -6.11 8.47 71.98 0.61 -5.50 16 10 C -0.54 -30.28 7.21 25.60 0.18 -30.09 16 11 H 0.05 2.97 5.84 -2.91 -0.02 2.96 16 12 C 0.02 0.90 5.30 84.65 0.45 1.35 16 13 N -0.92 -54.15 11.32 21.45 0.24 -53.91 16 14 Si 0.95 45.25 29.54 68.60 2.03 47.28 16 15 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 16 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 17 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 18 C 0.07 3.06 4.83 86.33 0.42 3.48 16 19 C -0.10 -3.12 5.76 30.65 0.18 -2.95 16 20 C 0.10 2.74 3.14 44.99 0.14 2.88 16 21 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 22 N -0.85 -22.34 7.89 -168.36 -1.33 -23.67 16 23 H 0.04 1.09 6.59 -2.39 -0.02 1.08 16 24 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 1.48 6.83 -2.39 -0.02 1.46 16 27 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 2.21 4.31 -2.39 -0.01 2.20 16 29 H 0.02 0.87 6.71 -2.39 -0.02 0.86 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.03 1.56 6.19 -2.39 -0.01 1.54 16 32 H 0.06 3.27 6.07 -2.38 -0.01 3.25 16 33 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 34 H 0.03 1.31 6.00 -2.39 -0.01 1.30 16 35 H 0.04 1.55 8.12 -2.39 -0.02 1.53 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.34 7.71 9.04 -89.69 -0.81 6.89 16 39 H 0.34 7.84 7.10 -89.69 -0.64 7.20 16 Total: -1.00 -62.49 286.70 -0.37 -62.86 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -0.41 Total: 19.25 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: 3.22 Total: -23.66 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -5.21 Total: -105.73 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -62.49 -0.37 -62.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251914103.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.203 kcal (2) G-P(sol) polarization free energy of solvation -62.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds