Wall clock time and date at job start Mon Mar 30 2020 03:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 H 1.09003 * 109.47034 * 304.99253 * 3 2 1 5 5 C 1.52998 * 109.46823 * 184.99926 * 3 2 1 6 6 N 1.46895 * 109.47253 * 64.99573 * 3 2 1 7 7 C 1.46962 * 111.00056 * 56.20426 * 6 3 2 8 8 C 1.53045 * 109.36309 * 183.18724 * 7 6 3 9 9 N 1.46961 * 109.36639 * 301.59554 * 8 7 6 10 10 C 1.46895 * 111.00013 * 183.18944 * 9 8 7 11 11 C 1.46954 * 110.87834 * 59.32047 * 9 8 7 12 12 H 1.09001 * 109.50754 * 60.65929 * 11 9 8 13 13 C 1.50703 * 109.48685 * 180.71443 * 11 9 8 14 14 H 1.07997 * 119.99818 * 27.80812 * 13 11 9 15 15 C 1.37877 * 119.99817 * 207.81133 * 13 11 9 16 16 N 1.31516 * 119.99838 * 353.84345 * 15 13 11 17 17 Si 1.86801 * 120.00091 * 173.57110 * 15 13 11 18 18 H 1.48501 * 109.47067 * 59.99465 * 17 15 13 19 19 H 1.48492 * 109.47131 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47123 * 299.99756 * 17 15 13 21 21 C 1.46961 * 111.00013 * 180.02562 * 6 3 2 22 22 H 1.08998 * 109.47225 * 300.00527 * 1 2 3 23 23 H 1.08998 * 109.46715 * 60.00649 * 1 2 3 24 24 H 1.09000 * 109.46744 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47225 * 239.99473 * 2 1 3 26 26 H 1.09005 * 109.47037 * 119.99425 * 2 1 3 27 27 H 1.09006 * 109.47442 * 299.99777 * 5 3 2 28 28 H 1.08996 * 109.47467 * 59.99607 * 5 3 2 29 29 H 1.08999 * 109.47075 * 179.97438 * 5 3 2 30 30 H 1.09003 * 109.48769 * 303.15184 * 7 6 3 31 31 H 1.08995 * 109.48795 * 63.21930 * 7 6 3 32 32 H 1.09001 * 109.49393 * 61.56473 * 8 7 6 33 33 H 1.09003 * 109.49037 * 181.62451 * 8 7 6 34 34 H 1.08996 * 109.47263 * 290.66563 * 10 9 8 35 35 H 1.09006 * 109.47025 * 50.66710 * 10 9 8 36 36 H 1.08999 * 109.47274 * 170.66110 * 10 9 8 37 37 H 0.96996 * 120.00520 * 1.65330 * 16 15 13 38 38 H 1.09003 * 109.49038 * 56.83954 * 21 6 3 39 39 H 1.09007 * 109.50364 * 296.78855 * 21 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 1.6513 2.0993 1.2551 7 6 2.1450 1.3479 2.4176 8 6 1.6529 2.0191 3.7020 9 7 2.1270 3.4097 3.7375 10 6 1.7383 4.0665 4.9926 11 6 1.6334 4.1612 2.5750 12 1 0.5435 4.1724 2.5849 13 6 2.1514 5.5752 2.6335 14 1 3.0851 5.7879 3.1329 15 6 1.4332 6.5971 2.0497 16 7 0.3609 6.3245 1.3387 17 14 1.9790 8.3694 2.2747 18 1 3.3504 8.5379 1.7304 19 1 1.0458 9.2703 1.5519 20 1 1.9752 8.7087 3.7204 21 6 2.1248 3.4901 1.2904 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 3.9995 0.9053 0.7162 28 1 3.8532 0.9569 -1.0570 29 1 3.9281 2.4720 -0.1262 30 1 1.7703 0.3251 2.3753 31 1 3.2348 1.3370 2.4075 32 1 0.5632 2.0057 3.7250 33 1 2.0417 1.4802 4.5660 34 1 0.6584 4.2141 5.0062 35 1 2.0301 3.4405 5.8359 36 1 2.2380 5.0324 5.0672 37 1 0.0615 5.4067 1.2450 38 1 1.7357 4.0288 0.4264 39 1 3.2146 3.5042 1.2671 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251925439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:53 Heat of formation + Delta-G solvation = 1.253871 kcal Electronic energy + Delta-G solvation = -17098.289374 eV Core-core repulsion = 14654.493201 eV Total energy + Delta-G solvation = -2443.796173 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.07250 -36.18835 -33.03084 -32.26216 -29.92945 -29.15545 -26.67002 -24.78304 -23.67922 -22.39683 -22.21970 -19.94977 -18.39298 -16.84288 -15.70033 -14.69372 -14.44188 -14.32162 -13.78669 -13.72524 -13.53756 -13.37585 -13.10055 -12.40895 -12.03590 -11.68517 -11.56362 -11.41105 -11.06865 -11.00485 -10.93098 -10.80489 -10.58798 -10.47337 -10.13846 -10.04526 -9.98441 -9.76980 -8.62923 -8.30509 -7.59674 -7.20613 -6.36487 -4.08168 3.43895 3.44868 3.64132 4.47221 4.56356 4.97304 5.04659 5.31946 5.39572 5.43128 5.59856 5.66540 5.77703 5.81973 5.91193 5.92838 6.01356 6.10927 6.16826 6.20415 6.29791 6.32397 6.38155 6.47728 6.55262 6.63019 6.65595 6.72254 6.82394 7.06809 7.34569 7.66124 7.79793 7.96722 8.07434 8.42877 8.61810 8.88921 9.65267 11.01384 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029564 B = 0.008792 C = 0.007772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.874676 B = 3183.862107 C = 3601.925767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.078 3.922 4 H 0.077 0.923 5 C -0.185 4.185 6 N -0.535 5.535 7 C 0.058 3.942 8 C 0.055 3.945 9 N -0.541 5.541 10 C 0.048 3.952 11 C 0.206 3.794 12 H 0.011 0.989 13 C -0.588 4.588 14 H 0.056 0.944 15 C 0.021 3.979 16 N -0.908 5.908 17 Si 1.068 2.932 18 H -0.288 1.288 19 H -0.283 1.283 20 H -0.288 1.288 21 C 0.071 3.929 22 H 0.066 0.934 23 H 0.049 0.951 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.027 0.973 33 H 0.060 0.940 34 H 0.012 0.988 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.272 0.728 38 H 0.067 0.933 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.548 -10.225 -0.167 10.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.031 4.031 4 H 0.095 0.905 5 C -0.244 4.244 6 N -0.259 5.259 7 C -0.070 4.070 8 C -0.074 4.074 9 N -0.266 5.266 10 C -0.100 4.100 11 C 0.099 3.901 12 H 0.028 0.972 13 C -0.627 4.627 14 H 0.074 0.926 15 C -0.184 4.184 16 N -0.544 5.544 17 Si 0.897 3.103 18 H -0.214 1.214 19 H -0.209 1.209 20 H -0.214 1.214 21 C -0.057 4.057 22 H 0.085 0.915 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.030 0.970 35 H 0.058 0.942 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.161 -8.652 -0.590 8.938 hybrid contribution 0.437 -1.615 0.370 1.713 sum 2.598 -10.267 -0.220 10.593 Atomic orbital electron populations 1.21651 0.95391 1.00184 1.02801 1.21640 0.96708 0.95890 1.01181 1.21716 0.92834 0.94759 0.93776 0.90468 1.22452 0.98304 1.02406 1.01214 1.62543 1.59264 1.03547 1.00561 1.22115 0.97617 0.96627 0.90682 1.22084 0.97347 0.91670 0.96280 1.62250 1.59877 1.00636 1.03819 1.22032 0.97815 0.99623 0.90556 1.19439 0.93786 0.92094 0.84736 0.97169 1.21826 1.09474 0.91254 1.40159 0.92610 1.25834 0.94589 1.04917 0.93067 1.70786 1.24228 1.23575 1.35803 0.83548 0.75613 0.74921 0.76249 1.21450 1.20865 1.21434 1.22509 0.97402 0.85087 1.00687 0.91474 0.93165 0.93949 0.92458 0.92032 0.92753 0.92928 0.91997 0.91362 0.94704 0.95501 0.92137 0.96965 0.94168 0.90742 0.91632 0.91477 0.95129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.80 37.16 0.36 -1.56 16 2 C -0.12 -1.57 5.10 -26.73 -0.14 -1.70 16 3 C 0.08 1.27 2.43 -67.72 -0.16 1.10 16 4 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 5 C -0.18 -2.81 8.50 37.16 0.32 -2.49 16 6 N -0.53 -10.30 4.19 -226.49 -0.95 -11.25 16 7 C 0.06 1.02 4.84 -3.77 -0.02 1.01 16 8 C 0.06 1.05 5.61 -3.77 -0.02 1.03 16 9 N -0.54 -12.15 4.78 -236.13 -1.13 -13.27 16 10 C 0.05 1.01 9.19 60.06 0.55 1.56 16 11 C 0.21 5.23 1.58 -68.81 -0.11 5.12 16 12 H 0.01 0.30 6.86 -51.93 -0.36 -0.05 16 13 C -0.59 -16.25 7.14 -34.44 -0.25 -16.49 16 14 H 0.06 1.57 7.63 -52.49 -0.40 1.17 16 15 C 0.02 0.60 5.45 -17.82 -0.10 0.50 16 16 N -0.91 -27.01 13.62 55.43 0.75 -26.26 16 17 Si 1.07 24.96 29.91 -169.99 -5.08 19.87 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 21 C 0.07 1.64 4.33 -3.77 -0.02 1.62 16 22 H 0.07 1.04 7.75 -51.93 -0.40 0.63 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.81 6.00 -51.93 -0.31 0.50 16 27 H 0.05 0.81 6.56 -51.93 -0.34 0.47 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.05 6.48 -51.93 -0.34 0.71 16 30 H 0.07 1.05 5.95 -51.93 -0.31 0.74 16 31 H 0.03 0.63 6.57 -51.93 -0.34 0.29 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 34 H 0.01 0.26 8.13 -51.93 -0.42 -0.16 16 35 H 0.04 0.71 8.04 -51.93 -0.42 0.29 16 36 H 0.07 1.65 7.10 -51.93 -0.37 1.28 16 37 H 0.27 8.17 6.44 -40.82 -0.26 7.91 16 38 H 0.07 1.69 7.87 -51.93 -0.41 1.28 16 39 H 0.03 0.73 6.49 -51.92 -0.34 0.39 16 LS Contribution 292.57 15.07 4.41 4.41 Total: -1.00 -28.95 292.57 -8.34 -37.28 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.77 Total: -0.47 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 0.42 Total: -10.31 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -1.32 Total: -50.79 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.95 -8.34 -37.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251925439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.538 kcal (2) G-P(sol) polarization free energy of solvation -28.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds