Wall clock time and date at job start Mon Mar 30 2020 03:13:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52999 * 109.46984 * 2 1
4 4 H 1.09003 * 109.47034 * 304.99253 * 3 2 1
5 5 C 1.52998 * 109.46823 * 184.99926 * 3 2 1
6 6 N 1.46895 * 109.47253 * 64.99573 * 3 2 1
7 7 C 1.46962 * 111.00056 * 56.20426 * 6 3 2
8 8 C 1.53045 * 109.36309 * 183.18724 * 7 6 3
9 9 N 1.46961 * 109.36639 * 301.59554 * 8 7 6
10 10 C 1.46895 * 111.00013 * 183.18944 * 9 8 7
11 11 C 1.46954 * 110.87834 * 59.32047 * 9 8 7
12 12 H 1.09001 * 109.50754 * 60.65929 * 11 9 8
13 13 C 1.50703 * 109.48685 * 180.71443 * 11 9 8
14 14 H 1.07997 * 119.99818 * 27.80812 * 13 11 9
15 15 C 1.37877 * 119.99817 * 207.81133 * 13 11 9
16 16 N 1.31516 * 119.99838 * 353.84345 * 15 13 11
17 17 Si 1.86801 * 120.00091 * 173.57110 * 15 13 11
18 18 H 1.48501 * 109.47067 * 59.99465 * 17 15 13
19 19 H 1.48492 * 109.47131 * 179.97438 * 17 15 13
20 20 H 1.48500 * 109.47123 * 299.99756 * 17 15 13
21 21 C 1.46961 * 111.00013 * 180.02562 * 6 3 2
22 22 H 1.08998 * 109.47225 * 300.00527 * 1 2 3
23 23 H 1.08998 * 109.46715 * 60.00649 * 1 2 3
24 24 H 1.09000 * 109.46744 * 180.02562 * 1 2 3
25 25 H 1.08998 * 109.47225 * 239.99473 * 2 1 3
26 26 H 1.09005 * 109.47037 * 119.99425 * 2 1 3
27 27 H 1.09006 * 109.47442 * 299.99777 * 5 3 2
28 28 H 1.08996 * 109.47467 * 59.99607 * 5 3 2
29 29 H 1.08999 * 109.47075 * 179.97438 * 5 3 2
30 30 H 1.09003 * 109.48769 * 303.15184 * 7 6 3
31 31 H 1.08995 * 109.48795 * 63.21930 * 7 6 3
32 32 H 1.09001 * 109.49393 * 61.56473 * 8 7 6
33 33 H 1.09003 * 109.49037 * 181.62451 * 8 7 6
34 34 H 1.08996 * 109.47263 * 290.66563 * 10 9 8
35 35 H 1.09006 * 109.47025 * 50.66710 * 10 9 8
36 36 H 1.08999 * 109.47274 * 170.66110 * 10 9 8
37 37 H 0.96996 * 120.00520 * 1.65330 * 16 15 13
38 38 H 1.09003 * 109.49038 * 56.83954 * 21 6 3
39 39 H 1.09007 * 109.50364 * 296.78855 * 21 6 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6055 1.9815 -0.8419
5 6 3.5648 1.4443 -0.1257
6 7 1.6513 2.0993 1.2551
7 6 2.1450 1.3479 2.4176
8 6 1.6529 2.0191 3.7020
9 7 2.1270 3.4097 3.7375
10 6 1.7383 4.0665 4.9926
11 6 1.6334 4.1612 2.5750
12 1 0.5435 4.1724 2.5849
13 6 2.1514 5.5752 2.6335
14 1 3.0851 5.7879 3.1329
15 6 1.4332 6.5971 2.0497
16 7 0.3609 6.3245 1.3387
17 14 1.9790 8.3694 2.2747
18 1 3.3504 8.5379 1.7304
19 1 1.0458 9.2703 1.5519
20 1 1.9752 8.7087 3.7204
21 6 2.1248 3.4901 1.2904
22 1 -0.3633 0.5139 0.8899
23 1 -0.3633 0.5137 -0.8900
24 1 -0.3633 -1.0277 0.0005
25 1 1.8934 -0.5139 -0.8899
26 1 1.8934 -0.5138 0.8901
27 1 3.9995 0.9053 0.7162
28 1 3.8532 0.9569 -1.0570
29 1 3.9281 2.4720 -0.1262
30 1 1.7703 0.3251 2.3753
31 1 3.2348 1.3370 2.4075
32 1 0.5632 2.0057 3.7250
33 1 2.0417 1.4802 4.5660
34 1 0.6584 4.2141 5.0062
35 1 2.0301 3.4405 5.8359
36 1 2.2380 5.0324 5.0672
37 1 0.0615 5.4067 1.2450
38 1 1.7357 4.0288 0.4264
39 1 3.2146 3.5042 1.2671
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000251925439.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:13:53
Heat of formation + Delta-G solvation = 1.253871 kcal
Electronic energy + Delta-G solvation = -17098.289374 eV
Core-core repulsion = 14654.493201 eV
Total energy + Delta-G solvation = -2443.796173 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.07250 -36.18835 -33.03084 -32.26216 -29.92945 -29.15545 -26.67002 -24.78304
-23.67922 -22.39683 -22.21970 -19.94977 -18.39298 -16.84288 -15.70033 -14.69372
-14.44188 -14.32162 -13.78669 -13.72524 -13.53756 -13.37585 -13.10055 -12.40895
-12.03590 -11.68517 -11.56362 -11.41105 -11.06865 -11.00485 -10.93098 -10.80489
-10.58798 -10.47337 -10.13846 -10.04526 -9.98441 -9.76980 -8.62923 -8.30509
-7.59674 -7.20613 -6.36487 -4.08168 3.43895 3.44868 3.64132 4.47221
4.56356 4.97304 5.04659 5.31946 5.39572 5.43128 5.59856 5.66540
5.77703 5.81973 5.91193 5.92838 6.01356 6.10927 6.16826 6.20415
6.29791 6.32397 6.38155 6.47728 6.55262 6.63019 6.65595 6.72254
6.82394 7.06809 7.34569 7.66124 7.79793 7.96722 8.07434 8.42877
8.61810 8.88921 9.65267 11.01384
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.029564 B = 0.008792 C = 0.007772
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 946.874676 B = 3183.862107 C = 3601.925767
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.117 4.117
3 C 0.078 3.922
4 H 0.077 0.923
5 C -0.185 4.185
6 N -0.535 5.535
7 C 0.058 3.942
8 C 0.055 3.945
9 N -0.541 5.541
10 C 0.048 3.952
11 C 0.206 3.794
12 H 0.011 0.989
13 C -0.588 4.588
14 H 0.056 0.944
15 C 0.021 3.979
16 N -0.908 5.908
17 Si 1.068 2.932
18 H -0.288 1.288
19 H -0.283 1.283
20 H -0.288 1.288
21 C 0.071 3.929
22 H 0.066 0.934
23 H 0.049 0.951
24 H 0.041 0.959
25 H 0.057 0.943
26 H 0.061 0.939
27 H 0.053 0.947
28 H 0.052 0.948
29 H 0.061 0.939
30 H 0.068 0.932
31 H 0.035 0.965
32 H 0.027 0.973
33 H 0.060 0.940
34 H 0.012 0.988
35 H 0.039 0.961
36 H 0.074 0.926
37 H 0.272 0.728
38 H 0.067 0.933
39 H 0.030 0.970
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.548 -10.225 -0.167 10.539
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.154 4.154
3 C -0.031 4.031
4 H 0.095 0.905
5 C -0.244 4.244
6 N -0.259 5.259
7 C -0.070 4.070
8 C -0.074 4.074
9 N -0.266 5.266
10 C -0.100 4.100
11 C 0.099 3.901
12 H 0.028 0.972
13 C -0.627 4.627
14 H 0.074 0.926
15 C -0.184 4.184
16 N -0.544 5.544
17 Si 0.897 3.103
18 H -0.214 1.214
19 H -0.209 1.209
20 H -0.214 1.214
21 C -0.057 4.057
22 H 0.085 0.915
23 H 0.068 0.932
24 H 0.061 0.939
25 H 0.075 0.925
26 H 0.080 0.920
27 H 0.072 0.928
28 H 0.071 0.929
29 H 0.080 0.920
30 H 0.086 0.914
31 H 0.053 0.947
32 H 0.045 0.955
33 H 0.079 0.921
34 H 0.030 0.970
35 H 0.058 0.942
36 H 0.093 0.907
37 H 0.084 0.916
38 H 0.085 0.915
39 H 0.049 0.951
Dipole moment (debyes) X Y Z Total
from point charges 2.161 -8.652 -0.590 8.938
hybrid contribution 0.437 -1.615 0.370 1.713
sum 2.598 -10.267 -0.220 10.593
Atomic orbital electron populations
1.21651 0.95391 1.00184 1.02801 1.21640 0.96708 0.95890 1.01181
1.21716 0.92834 0.94759 0.93776 0.90468 1.22452 0.98304 1.02406
1.01214 1.62543 1.59264 1.03547 1.00561 1.22115 0.97617 0.96627
0.90682 1.22084 0.97347 0.91670 0.96280 1.62250 1.59877 1.00636
1.03819 1.22032 0.97815 0.99623 0.90556 1.19439 0.93786 0.92094
0.84736 0.97169 1.21826 1.09474 0.91254 1.40159 0.92610 1.25834
0.94589 1.04917 0.93067 1.70786 1.24228 1.23575 1.35803 0.83548
0.75613 0.74921 0.76249 1.21450 1.20865 1.21434 1.22509 0.97402
0.85087 1.00687 0.91474 0.93165 0.93949 0.92458 0.92032 0.92753
0.92928 0.91997 0.91362 0.94704 0.95501 0.92137 0.96965 0.94168
0.90742 0.91632 0.91477 0.95129
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.93 9.80 37.16 0.36 -1.56 16
2 C -0.12 -1.57 5.10 -26.73 -0.14 -1.70 16
3 C 0.08 1.27 2.43 -67.72 -0.16 1.10 16
4 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16
5 C -0.18 -2.81 8.50 37.16 0.32 -2.49 16
6 N -0.53 -10.30 4.19 -226.49 -0.95 -11.25 16
7 C 0.06 1.02 4.84 -3.77 -0.02 1.01 16
8 C 0.06 1.05 5.61 -3.77 -0.02 1.03 16
9 N -0.54 -12.15 4.78 -236.13 -1.13 -13.27 16
10 C 0.05 1.01 9.19 60.06 0.55 1.56 16
11 C 0.21 5.23 1.58 -68.81 -0.11 5.12 16
12 H 0.01 0.30 6.86 -51.93 -0.36 -0.05 16
13 C -0.59 -16.25 7.14 -34.44 -0.25 -16.49 16
14 H 0.06 1.57 7.63 -52.49 -0.40 1.17 16
15 C 0.02 0.60 5.45 -17.82 -0.10 0.50 16
16 N -0.91 -27.01 13.62 55.43 0.75 -26.26 16
17 Si 1.07 24.96 29.91 -169.99 -5.08 19.87 16
18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16
19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16
20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16
21 C 0.07 1.64 4.33 -3.77 -0.02 1.62 16
22 H 0.07 1.04 7.75 -51.93 -0.40 0.63 16
23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
24 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16
25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
26 H 0.06 0.81 6.00 -51.93 -0.31 0.50 16
27 H 0.05 0.81 6.56 -51.93 -0.34 0.47 16
28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
29 H 0.06 1.05 6.48 -51.93 -0.34 0.71 16
30 H 0.07 1.05 5.95 -51.93 -0.31 0.74 16
31 H 0.03 0.63 6.57 -51.93 -0.34 0.29 16
32 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16
33 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16
34 H 0.01 0.26 8.13 -51.93 -0.42 -0.16 16
35 H 0.04 0.71 8.04 -51.93 -0.42 0.29 16
36 H 0.07 1.65 7.10 -51.93 -0.37 1.28 16
37 H 0.27 8.17 6.44 -40.82 -0.26 7.91 16
38 H 0.07 1.69 7.87 -51.93 -0.41 1.28 16
39 H 0.03 0.73 6.49 -51.92 -0.34 0.39 16
LS Contribution 292.57 15.07 4.41 4.41
Total: -1.00 -28.95 292.57 -8.34 -37.28
By element:
Atomic # 1 Polarization: 6.30 SS G_CDS: -6.77 Total: -0.47 kcal
Atomic # 6 Polarization: -10.73 SS G_CDS: 0.42 Total: -10.31 kcal
Atomic # 7 Polarization: -49.46 SS G_CDS: -1.32 Total: -50.79 kcal
Atomic # 14 Polarization: 24.96 SS G_CDS: -5.08 Total: 19.87 kcal
Total LS contribution 4.41 Total: 4.41 kcal
Total: -28.95 -8.34 -37.28 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000251925439.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.538 kcal
(2) G-P(sol) polarization free energy of solvation -28.945 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.593 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.284 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.254 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds