Wall clock time and date at job start Mon Mar 30 2020 03:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 H 1.09003 * 109.47034 * 304.99253 * 3 2 1 5 5 C 1.52998 * 109.46823 * 184.99926 * 3 2 1 6 6 N 1.46895 * 109.47253 * 64.99573 * 3 2 1 7 7 C 1.46962 * 111.00056 * 56.20426 * 6 3 2 8 8 C 1.53045 * 109.36309 * 183.18724 * 7 6 3 9 9 N 1.46961 * 109.36639 * 301.59554 * 8 7 6 10 10 C 1.46895 * 111.00013 * 183.18944 * 9 8 7 11 11 C 1.46954 * 110.87834 * 59.32047 * 9 8 7 12 12 H 1.09001 * 109.50754 * 60.65929 * 11 9 8 13 13 C 1.50703 * 109.48685 * 180.71443 * 11 9 8 14 14 H 1.07997 * 119.99818 * 27.80812 * 13 11 9 15 15 C 1.37877 * 119.99817 * 207.81133 * 13 11 9 16 16 N 1.31516 * 119.99838 * 353.84345 * 15 13 11 17 17 Si 1.86801 * 120.00091 * 173.57110 * 15 13 11 18 18 H 1.48501 * 109.47067 * 59.99465 * 17 15 13 19 19 H 1.48492 * 109.47131 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47123 * 299.99756 * 17 15 13 21 21 C 1.46961 * 111.00013 * 180.02562 * 6 3 2 22 22 H 1.08998 * 109.47225 * 300.00527 * 1 2 3 23 23 H 1.08998 * 109.46715 * 60.00649 * 1 2 3 24 24 H 1.09000 * 109.46744 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47225 * 239.99473 * 2 1 3 26 26 H 1.09005 * 109.47037 * 119.99425 * 2 1 3 27 27 H 1.09006 * 109.47442 * 299.99777 * 5 3 2 28 28 H 1.08996 * 109.47467 * 59.99607 * 5 3 2 29 29 H 1.08999 * 109.47075 * 179.97438 * 5 3 2 30 30 H 1.09003 * 109.48769 * 303.15184 * 7 6 3 31 31 H 1.08995 * 109.48795 * 63.21930 * 7 6 3 32 32 H 1.09001 * 109.49393 * 61.56473 * 8 7 6 33 33 H 1.09003 * 109.49037 * 181.62451 * 8 7 6 34 34 H 1.08996 * 109.47263 * 290.66563 * 10 9 8 35 35 H 1.09006 * 109.47025 * 50.66710 * 10 9 8 36 36 H 1.08999 * 109.47274 * 170.66110 * 10 9 8 37 37 H 0.96996 * 120.00520 * 1.65330 * 16 15 13 38 38 H 1.09003 * 109.49038 * 56.83954 * 21 6 3 39 39 H 1.09007 * 109.50364 * 296.78855 * 21 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 1.6513 2.0993 1.2551 7 6 2.1450 1.3479 2.4176 8 6 1.6529 2.0191 3.7020 9 7 2.1270 3.4097 3.7375 10 6 1.7383 4.0665 4.9926 11 6 1.6334 4.1612 2.5750 12 1 0.5435 4.1724 2.5849 13 6 2.1514 5.5752 2.6335 14 1 3.0851 5.7879 3.1329 15 6 1.4332 6.5971 2.0497 16 7 0.3609 6.3245 1.3387 17 14 1.9790 8.3694 2.2747 18 1 3.3504 8.5379 1.7304 19 1 1.0458 9.2703 1.5519 20 1 1.9752 8.7087 3.7204 21 6 2.1248 3.4901 1.2904 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 3.9995 0.9053 0.7162 28 1 3.8532 0.9569 -1.0570 29 1 3.9281 2.4720 -0.1262 30 1 1.7703 0.3251 2.3753 31 1 3.2348 1.3370 2.4075 32 1 0.5632 2.0057 3.7250 33 1 2.0417 1.4802 4.5660 34 1 0.6584 4.2141 5.0062 35 1 2.0301 3.4405 5.8359 36 1 2.2380 5.0324 5.0672 37 1 0.0615 5.4067 1.2450 38 1 1.7357 4.0288 0.4264 39 1 3.2146 3.5042 1.2671 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251925439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:52 Heat of formation + Delta-G solvation = -18.630131 kcal Electronic energy + Delta-G solvation = -17099.151609 eV Core-core repulsion = 14654.493201 eV Total energy + Delta-G solvation = -2444.658408 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.66502 -37.78157 -35.08292 -33.65272 -31.56122 -30.63119 -28.31435 -26.77617 -25.08596 -24.07151 -23.77302 -21.57314 -19.96065 -18.85516 -17.20053 -16.44695 -16.15563 -15.78906 -15.66076 -15.41286 -15.02522 -14.69148 -14.47544 -13.85268 -13.72592 -13.35081 -13.12547 -12.83212 -12.81803 -12.70809 -12.50653 -12.18217 -12.13475 -11.95851 -11.84036 -11.66476 -11.45741 -11.37589 -10.70765 -10.38992 -9.19271 -9.03171 -8.61462 -6.34099 1.52623 1.60042 1.79698 2.55308 2.98926 3.19506 3.34550 3.82551 4.03402 4.18390 4.24908 4.25882 4.41502 4.47410 4.51508 4.54431 4.58837 4.70009 4.72751 4.77733 4.82596 4.90068 4.92313 5.06246 5.10241 5.13426 5.13788 5.26135 5.36926 5.38693 5.52815 5.85773 5.98101 6.19378 6.29687 6.47986 6.48461 6.74597 7.47620 8.75024 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029564 B = 0.008792 C = 0.007772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.874676 B = 3183.862107 C = 3601.925767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 C 0.073 3.927 4 H 0.061 0.939 5 C -0.177 4.177 6 N -0.544 5.544 7 C 0.061 3.939 8 C 0.052 3.948 9 N -0.549 5.549 10 C 0.051 3.949 11 C 0.211 3.789 12 H -0.031 1.031 13 C -0.595 4.595 14 H 0.048 0.952 15 C -0.027 4.027 16 N -0.933 5.933 17 Si 1.114 2.886 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.270 1.270 21 C 0.092 3.908 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.034 0.966 30 H 0.101 0.899 31 H 0.036 0.964 32 H 0.015 0.985 33 H 0.095 0.905 34 H -0.003 1.003 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.257 0.743 38 H 0.033 0.967 39 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.677 -12.020 0.295 12.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 C -0.035 4.035 4 H 0.079 0.921 5 C -0.236 4.236 6 N -0.269 5.269 7 C -0.066 4.066 8 C -0.076 4.076 9 N -0.274 5.274 10 C -0.097 4.097 11 C 0.103 3.897 12 H -0.014 1.014 13 C -0.633 4.633 14 H 0.066 0.934 15 C -0.226 4.226 16 N -0.570 5.570 17 Si 0.936 3.064 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.196 1.196 21 C -0.037 4.037 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.085 0.915 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.119 0.881 31 H 0.054 0.946 32 H 0.033 0.967 33 H 0.113 0.887 34 H 0.015 0.985 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 3.304 -10.485 -0.115 10.994 hybrid contribution 0.079 -1.149 0.252 1.179 sum 3.383 -11.634 0.137 12.117 Atomic orbital electron populations 1.21624 0.95600 1.01304 1.01306 1.21607 0.96399 0.93571 1.02927 1.21843 0.93797 0.96281 0.91586 0.92081 1.22364 0.97121 1.01138 1.02952 1.62444 1.59649 1.01980 1.02778 1.22193 0.97670 0.97645 0.89136 1.22262 0.96832 0.89919 0.98600 1.62217 1.59826 1.02157 1.03213 1.22038 0.96634 0.99726 0.91336 1.19235 0.91136 0.92177 0.87109 1.01363 1.22074 1.08995 0.92866 1.39411 0.93403 1.27238 0.94102 1.08994 0.92309 1.70909 1.25725 1.22537 1.37803 0.82971 0.75887 0.70374 0.77192 1.19679 1.21080 1.19575 1.21985 0.96165 0.87447 0.98053 0.93924 0.93786 0.91471 0.89891 0.90953 0.92052 0.90240 0.94653 0.88097 0.94591 0.96679 0.88728 0.98485 0.90176 0.92491 0.93286 0.94799 0.96145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.80 71.98 0.71 -2.81 16 2 C -0.11 -2.56 5.10 30.60 0.16 -2.40 16 3 C 0.07 2.30 2.43 44.92 0.11 2.41 16 4 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 5 C -0.18 -5.08 8.50 71.98 0.61 -4.47 16 6 N -0.54 -20.92 4.19 -870.48 -3.65 -24.57 16 7 C 0.06 2.04 4.84 86.31 0.42 2.46 16 8 C 0.05 1.91 5.61 86.31 0.48 2.39 16 9 N -0.55 -24.56 4.78 -900.99 -4.30 -28.86 16 10 C 0.05 2.11 9.19 127.69 1.17 3.29 16 11 C 0.21 11.07 1.58 44.17 0.07 11.14 16 12 H -0.03 -1.88 6.86 -2.39 -0.02 -1.90 16 13 C -0.59 -33.82 7.14 25.60 0.18 -33.64 16 14 H 0.05 2.75 7.63 -2.91 -0.02 2.72 16 15 C -0.03 -1.58 5.45 84.65 0.46 -1.12 16 16 N -0.93 -57.71 13.62 21.45 0.29 -57.42 16 17 Si 1.11 50.73 29.91 68.60 2.05 52.78 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 21 C 0.09 4.41 4.33 86.31 0.37 4.79 16 22 H 0.04 1.26 7.75 -2.39 -0.02 1.25 16 23 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.07 1.59 6.00 -2.38 -0.01 1.58 16 27 H 0.06 1.67 6.56 -2.38 -0.02 1.65 16 28 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.03 1.18 6.48 -2.39 -0.02 1.17 16 30 H 0.10 2.74 5.95 -2.39 -0.01 2.73 16 31 H 0.04 1.21 6.57 -2.39 -0.02 1.20 16 32 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.09 2.83 8.08 -2.39 -0.02 2.81 16 34 H 0.00 -0.16 8.13 -2.39 -0.02 -0.17 16 35 H 0.08 2.65 8.04 -2.38 -0.02 2.63 16 36 H 0.06 2.52 7.10 -2.39 -0.02 2.51 16 37 H 0.26 16.34 6.44 -92.71 -0.60 15.74 16 38 H 0.03 1.81 7.87 -2.39 -0.02 1.79 16 39 H 0.02 1.00 6.49 -2.38 -0.02 0.99 16 Total: -1.00 -65.07 292.57 0.31 -64.77 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 1.17 Total: 11.25 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 4.75 Total: -17.96 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -7.66 Total: -110.84 kcal Atomic # 14 Polarization: 50.73 SS G_CDS: 2.05 Total: 52.78 kcal Total: -65.07 0.31 -64.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251925439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.139 kcal (2) G-P(sol) polarization free energy of solvation -65.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds