Wall clock time and date at job start Mon Mar 30 2020 03:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47182 * 2 1 4 4 H 1.08997 * 109.48840 * 303.39642 * 3 2 1 5 5 C 1.53050 * 109.49045 * 63.44510 * 3 2 1 6 6 N 1.46955 * 109.36707 * 178.37008 * 5 3 2 7 7 C 1.46898 * 111.00102 * 176.80845 * 6 5 3 8 8 H 1.09001 * 109.47377 * 59.99944 * 7 6 5 9 9 C 1.52998 * 109.47113 * 299.99445 * 7 6 5 10 10 C 1.50700 * 109.47179 * 179.97438 * 7 6 5 11 11 H 1.08005 * 120.00140 * 32.37253 * 10 7 6 12 12 C 1.37880 * 120.00134 * 212.37392 * 10 7 6 13 13 N 1.31515 * 119.99631 * 184.46298 * 12 10 7 14 14 Si 1.86794 * 119.99775 * 4.46292 * 12 10 7 15 15 H 1.48500 * 109.47471 * 88.56873 * 14 12 10 16 16 H 1.48505 * 109.46976 * 208.56789 * 14 12 10 17 17 H 1.48504 * 109.47366 * 328.56645 * 14 12 10 18 18 C 1.46956 * 110.87901 * 300.67853 * 6 5 3 19 19 C 1.53051 * 109.36775 * 59.31648 * 18 6 5 20 20 N 1.46958 * 109.48772 * 183.33207 * 3 2 1 21 21 C 1.46898 * 111.00010 * 56.84525 * 20 3 2 22 22 H 1.08997 * 109.47416 * 56.31111 * 1 2 3 23 23 H 1.09006 * 109.46920 * 296.30850 * 1 2 3 24 24 H 1.09007 * 109.47440 * 176.31076 * 1 2 3 25 25 H 1.09002 * 109.47020 * 120.00442 * 2 1 3 26 26 H 1.09000 * 109.46897 * 239.99879 * 2 1 3 27 27 H 1.09007 * 109.48481 * 298.33124 * 5 3 2 28 28 H 1.08997 * 109.49016 * 58.37589 * 5 3 2 29 29 H 1.09007 * 109.46766 * 67.89455 * 9 7 6 30 30 H 1.08998 * 109.47435 * 187.89093 * 9 7 6 31 31 H 1.08996 * 109.47670 * 307.89440 * 9 7 6 32 32 H 0.97000 * 119.99382 * 180.02562 * 13 12 10 33 33 H 1.09005 * 109.49403 * 179.29159 * 18 6 5 34 34 H 1.09005 * 109.48564 * 299.34784 * 18 6 5 35 35 H 1.08998 * 109.48452 * 61.57181 * 19 18 6 36 36 H 1.08995 * 109.49104 * 181.63319 * 19 18 6 37 37 H 1.09004 * 109.47049 * 52.88560 * 21 20 3 38 38 H 1.08999 * 109.47186 * 172.88190 * 21 20 3 39 39 H 1.08992 * 109.47167 * 292.88567 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6279 1.9738 -0.8579 5 6 1.6021 2.1389 1.2906 6 7 2.1263 3.5117 1.3056 7 6 1.6637 4.2389 2.4951 8 1 2.0072 3.7238 3.3923 9 6 0.1349 4.2977 2.4945 10 6 2.2207 5.6391 2.4761 11 1 2.3843 6.1424 1.5346 12 6 2.5214 6.2776 3.6605 13 7 2.9241 7.5295 3.6488 14 14 2.3567 5.3645 5.2817 15 1 3.6307 4.6656 5.5879 16 1 2.0499 6.3320 6.3658 17 1 1.2585 4.3700 5.1805 18 6 3.5936 3.5129 1.2249 19 6 4.0316 2.8164 -0.0656 20 7 3.5073 1.4436 -0.0805 21 6 3.9699 0.7164 -1.2701 22 1 -0.3634 0.5700 -0.8550 23 1 -0.3633 0.4555 0.9213 24 1 -0.3634 -1.0256 -0.0661 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 0.5133 2.1648 1.3384 28 1 1.9908 1.5914 2.1492 29 1 -0.2673 3.2964 2.6495 30 1 -0.2039 4.9534 3.2966 31 1 -0.2135 4.6849 1.5371 32 1 3.1360 7.9786 4.4820 33 1 3.9570 4.5406 1.2250 34 1 4.0053 2.9813 2.0829 35 1 3.6426 3.3637 -0.9242 36 1 5.1202 2.7905 -0.1134 37 1 3.4716 1.1128 -2.1549 38 1 5.0479 0.8391 -1.3747 39 1 3.7333 -0.3422 -1.1636 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251934795.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:22 Heat of formation + Delta-G solvation = 5.360756 kcal Electronic energy + Delta-G solvation = -16911.137121 eV Core-core repulsion = 14467.519036 eV Total energy + Delta-G solvation = -2443.618085 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.17890 -35.83649 -33.64397 -32.47557 -30.43650 -28.88861 -26.81666 -25.47767 -23.82404 -23.13228 -21.02960 -19.60357 -19.08190 -16.94588 -15.77359 -15.15544 -14.78293 -14.41829 -14.16025 -13.77901 -13.46167 -13.07156 -12.89674 -12.57490 -12.41470 -12.02401 -11.72636 -11.64407 -11.29787 -11.23397 -10.97314 -10.75437 -10.56402 -10.51210 -10.37881 -10.08717 -9.79497 -9.62783 -9.01256 -8.57117 -8.05882 -7.26327 -6.08343 -4.06538 3.26823 3.35802 3.38436 4.15952 4.40617 4.75496 5.03495 5.17968 5.27765 5.29254 5.44089 5.53233 5.63747 5.69099 5.71597 5.90004 5.91515 5.97020 6.03870 6.09366 6.15943 6.19041 6.33719 6.37635 6.50096 6.58112 6.66640 6.71973 6.86393 6.99583 7.28378 7.33190 7.41879 7.65776 8.05031 8.15805 8.67995 9.01643 9.55799 11.04595 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.033716 B = 0.008361 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.262518 B = 3347.950871 C = 3784.607890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.089 3.911 4 H 0.046 0.954 5 C 0.057 3.943 6 N -0.530 5.530 7 C 0.180 3.820 8 H 0.001 0.999 9 C -0.132 4.132 10 C -0.502 4.502 11 H 0.080 0.920 12 C 0.072 3.928 13 N -0.898 5.898 14 Si 0.871 3.129 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.265 1.265 18 C 0.068 3.932 19 C 0.058 3.942 20 N -0.543 5.543 21 C 0.025 3.975 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.027 0.973 29 H 0.020 0.980 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.264 0.736 33 H 0.098 0.902 34 H 0.026 0.974 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.022 0.978 38 H 0.062 0.938 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.331 -13.726 -6.746 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.020 4.020 4 H 0.064 0.936 5 C -0.072 4.072 6 N -0.255 5.255 7 C 0.073 3.927 8 H 0.018 0.982 9 C -0.190 4.190 10 C -0.540 4.540 11 H 0.098 0.902 12 C -0.130 4.130 13 N -0.536 5.536 14 Si 0.698 3.302 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.190 1.190 18 C -0.060 4.060 19 C -0.070 4.070 20 N -0.268 5.268 21 C -0.124 4.124 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.046 0.954 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.040 0.960 38 H 0.081 0.919 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.270 -13.542 -6.615 15.125 hybrid contribution 0.004 -0.383 0.959 1.032 sum -1.266 -13.925 -5.656 15.083 Atomic orbital electron populations 1.21790 0.95647 1.01192 1.02275 1.21594 0.95628 0.96190 1.02128 1.21735 0.86899 0.95067 0.98290 0.93645 1.22228 0.99750 0.90135 0.95090 1.62254 1.08629 1.11620 1.43015 1.19713 0.92330 0.94349 0.86287 0.98177 1.21976 0.97880 0.97893 1.01287 1.20896 1.41886 0.96525 0.94727 0.90164 1.24976 0.94665 0.94698 0.98657 1.69897 1.45865 1.10507 1.27301 0.86956 0.79081 0.79995 0.84155 1.20380 1.21394 1.18955 1.21988 0.88655 1.01070 0.94299 1.22263 0.98765 0.87264 0.98718 1.62184 1.09570 1.16083 1.38920 1.22360 1.00148 0.98882 0.90985 0.92767 0.92242 0.92964 0.91486 0.92099 0.90579 0.95447 0.96129 0.93230 0.92859 0.92652 0.88432 0.95580 0.94411 0.91082 0.95990 0.91908 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.54 37.16 0.35 -1.34 16 2 C -0.12 -1.46 5.19 -26.74 -0.14 -1.60 16 3 C 0.09 1.37 2.03 -67.66 -0.14 1.24 16 4 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 5 C 0.06 1.03 4.28 -3.77 -0.02 1.01 16 6 N -0.53 -11.34 4.57 -227.88 -1.04 -12.38 16 7 C 0.18 4.31 1.63 -68.87 -0.11 4.20 16 8 H 0.00 0.02 5.39 -51.93 -0.28 -0.26 16 9 C -0.13 -2.88 8.66 37.16 0.32 -2.56 16 10 C -0.50 -13.92 7.43 -34.44 -0.26 -14.17 16 11 H 0.08 2.45 8.00 -52.48 -0.42 2.03 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 13 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 14 Si 0.87 21.59 26.88 -169.99 -4.57 17.03 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.26 -6.34 6.72 56.52 0.38 -5.96 16 18 C 0.07 1.40 5.34 -3.77 -0.02 1.38 16 19 C 0.06 0.97 5.60 -3.77 -0.02 0.95 16 20 N -0.54 -8.46 4.78 -234.74 -1.12 -9.58 16 21 C 0.02 0.30 8.97 60.06 0.54 0.84 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.70 6.75 -51.93 -0.35 0.35 16 24 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.68 6.33 -51.93 -0.33 0.36 16 27 H 0.08 1.32 4.87 -51.93 -0.25 1.07 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.39 6.78 -51.93 -0.35 0.03 16 30 H 0.05 1.10 7.96 -51.93 -0.41 0.69 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.10 2.21 6.82 -51.93 -0.35 1.86 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 1.07 8.06 -51.93 -0.42 0.66 16 37 H 0.02 0.26 8.11 -51.93 -0.42 -0.16 16 38 H 0.06 0.71 8.01 -51.93 -0.42 0.29 16 39 H 0.07 0.72 6.60 -51.93 -0.34 0.38 16 LS Contribution 292.40 15.07 4.41 4.41 Total: -1.00 -29.36 292.40 -8.03 -37.39 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -6.89 Total: -2.44 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 0.42 Total: -8.09 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: -1.39 Total: -48.29 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.57 Total: 17.03 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.36 -8.03 -37.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251934795.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.752 kcal (2) G-P(sol) polarization free energy of solvation -29.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds