Wall clock time and date at job start Mon Mar 30 2020 03:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47182 * 2 1 4 4 H 1.08997 * 109.48840 * 303.39642 * 3 2 1 5 5 C 1.53050 * 109.49045 * 63.44510 * 3 2 1 6 6 N 1.46955 * 109.36707 * 178.37008 * 5 3 2 7 7 C 1.46898 * 111.00102 * 176.80845 * 6 5 3 8 8 H 1.09001 * 109.47377 * 59.99944 * 7 6 5 9 9 C 1.52998 * 109.47113 * 299.99445 * 7 6 5 10 10 C 1.50700 * 109.47179 * 179.97438 * 7 6 5 11 11 H 1.08005 * 120.00140 * 32.37253 * 10 7 6 12 12 C 1.37880 * 120.00134 * 212.37392 * 10 7 6 13 13 N 1.31515 * 119.99631 * 184.46298 * 12 10 7 14 14 Si 1.86794 * 119.99775 * 4.46292 * 12 10 7 15 15 H 1.48500 * 109.47471 * 88.56873 * 14 12 10 16 16 H 1.48505 * 109.46976 * 208.56789 * 14 12 10 17 17 H 1.48504 * 109.47366 * 328.56645 * 14 12 10 18 18 C 1.46956 * 110.87901 * 300.67853 * 6 5 3 19 19 C 1.53051 * 109.36775 * 59.31648 * 18 6 5 20 20 N 1.46958 * 109.48772 * 183.33207 * 3 2 1 21 21 C 1.46898 * 111.00010 * 56.84525 * 20 3 2 22 22 H 1.08997 * 109.47416 * 56.31111 * 1 2 3 23 23 H 1.09006 * 109.46920 * 296.30850 * 1 2 3 24 24 H 1.09007 * 109.47440 * 176.31076 * 1 2 3 25 25 H 1.09002 * 109.47020 * 120.00442 * 2 1 3 26 26 H 1.09000 * 109.46897 * 239.99879 * 2 1 3 27 27 H 1.09007 * 109.48481 * 298.33124 * 5 3 2 28 28 H 1.08997 * 109.49016 * 58.37589 * 5 3 2 29 29 H 1.09007 * 109.46766 * 67.89455 * 9 7 6 30 30 H 1.08998 * 109.47435 * 187.89093 * 9 7 6 31 31 H 1.08996 * 109.47670 * 307.89440 * 9 7 6 32 32 H 0.97000 * 119.99382 * 180.02562 * 13 12 10 33 33 H 1.09005 * 109.49403 * 179.29159 * 18 6 5 34 34 H 1.09005 * 109.48564 * 299.34784 * 18 6 5 35 35 H 1.08998 * 109.48452 * 61.57181 * 19 18 6 36 36 H 1.08995 * 109.49104 * 181.63319 * 19 18 6 37 37 H 1.09004 * 109.47049 * 52.88560 * 21 20 3 38 38 H 1.08999 * 109.47186 * 172.88190 * 21 20 3 39 39 H 1.08992 * 109.47167 * 292.88567 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6279 1.9738 -0.8579 5 6 1.6021 2.1389 1.2906 6 7 2.1263 3.5117 1.3056 7 6 1.6637 4.2389 2.4951 8 1 2.0072 3.7238 3.3923 9 6 0.1349 4.2977 2.4945 10 6 2.2207 5.6391 2.4761 11 1 2.3843 6.1424 1.5346 12 6 2.5214 6.2776 3.6605 13 7 2.9241 7.5295 3.6488 14 14 2.3567 5.3645 5.2817 15 1 3.6307 4.6656 5.5879 16 1 2.0499 6.3320 6.3658 17 1 1.2585 4.3700 5.1805 18 6 3.5936 3.5129 1.2249 19 6 4.0316 2.8164 -0.0656 20 7 3.5073 1.4436 -0.0805 21 6 3.9699 0.7164 -1.2701 22 1 -0.3634 0.5700 -0.8550 23 1 -0.3633 0.4555 0.9213 24 1 -0.3634 -1.0256 -0.0661 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 0.5133 2.1648 1.3384 28 1 1.9908 1.5914 2.1492 29 1 -0.2673 3.2964 2.6495 30 1 -0.2039 4.9534 3.2966 31 1 -0.2135 4.6849 1.5371 32 1 3.1360 7.9786 4.4820 33 1 3.9570 4.5406 1.2250 34 1 4.0053 2.9813 2.0829 35 1 3.6426 3.3637 -0.9242 36 1 5.1202 2.7905 -0.1134 37 1 3.4716 1.1128 -2.1549 38 1 5.0479 0.8391 -1.3747 39 1 3.7333 -0.3422 -1.1636 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251934795.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:22 Heat of formation + Delta-G solvation = -15.772191 kcal Electronic energy + Delta-G solvation = -16912.053514 eV Core-core repulsion = 14467.519036 eV Total energy + Delta-G solvation = -2444.534478 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.58035 -37.43743 -34.78026 -34.52625 -32.17293 -30.23324 -28.15190 -27.34567 -25.14848 -24.52045 -22.40318 -21.25905 -20.56146 -19.05295 -17.31453 -16.51482 -16.18588 -16.02521 -15.60206 -15.24873 -14.94624 -14.54644 -14.46309 -14.15070 -13.89584 -13.26444 -13.10838 -12.95947 -12.75581 -12.64350 -12.60355 -12.41679 -12.08664 -11.97341 -11.81533 -11.75889 -11.57058 -11.08751 -10.94986 -10.75221 -9.29187 -8.98991 -8.29927 -6.32137 1.29573 1.31910 1.42274 2.31281 2.95932 3.01312 3.26020 3.89468 4.02752 4.12745 4.34130 4.35651 4.41353 4.47668 4.54721 4.61363 4.64656 4.70390 4.77649 4.81893 4.88583 4.90341 4.97836 5.06410 5.09306 5.12581 5.19330 5.22253 5.36711 5.45710 5.46123 5.67927 6.03763 6.10780 6.20410 6.40109 6.69628 6.76894 7.33698 8.86857 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.033716 B = 0.008361 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.262518 B = 3347.950871 C = 3784.607890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C 0.092 3.908 4 H 0.036 0.964 5 C 0.058 3.942 6 N -0.541 5.541 7 C 0.181 3.819 8 H -0.007 1.007 9 C -0.127 4.127 10 C -0.499 4.499 11 H 0.036 0.964 12 C 0.017 3.983 13 N -0.944 5.944 14 Si 0.932 3.068 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.247 1.247 18 C 0.071 3.929 19 C 0.068 3.932 20 N -0.552 5.552 21 C 0.025 3.975 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.020 0.980 29 H 0.052 0.948 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.266 0.734 33 H 0.062 0.938 34 H 0.015 0.985 35 H 0.031 0.969 36 H 0.089 0.911 37 H 0.026 0.974 38 H 0.073 0.927 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.013 -16.698 -6.943 18.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.017 4.017 4 H 0.054 0.946 5 C -0.070 4.070 6 N -0.266 5.266 7 C 0.074 3.926 8 H 0.011 0.989 9 C -0.185 4.185 10 C -0.537 4.537 11 H 0.054 0.946 12 C -0.180 4.180 13 N -0.585 5.585 14 Si 0.757 3.243 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.170 1.170 18 C -0.058 4.058 19 C -0.060 4.060 20 N -0.277 5.277 21 C -0.122 4.122 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.033 0.967 35 H 0.049 0.951 36 H 0.108 0.892 37 H 0.044 0.956 38 H 0.092 0.908 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.961 -16.544 -6.835 18.007 hybrid contribution 0.244 0.555 0.913 1.096 sum -1.717 -15.989 -5.922 17.137 Atomic orbital electron populations 1.21784 0.94617 1.02489 1.01861 1.21548 0.96446 0.93769 1.02919 1.21737 0.87024 0.96771 0.96168 0.94569 1.22324 1.00161 0.88068 0.96481 1.62188 1.09079 1.13845 1.41497 1.19613 0.93652 0.92222 0.87160 0.98896 1.21860 0.96021 0.99634 1.00958 1.21022 1.41454 0.98308 0.92950 0.94613 1.25753 0.94541 0.95349 1.02387 1.70037 1.47749 1.12322 1.28375 0.85956 0.79649 0.79117 0.79588 1.20015 1.20841 1.17021 1.21887 0.88335 0.99428 0.96100 1.22095 0.99829 0.88040 0.96023 1.62189 1.09594 1.14911 1.40997 1.22445 1.00861 0.99347 0.89577 0.92714 0.93075 0.90914 0.91658 0.90257 0.89654 0.96151 0.92929 0.94007 0.93048 0.92514 0.91907 0.96685 0.95092 0.89241 0.95578 0.90791 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.54 71.98 0.69 -2.16 16 2 C -0.11 -2.34 5.19 30.59 0.16 -2.18 16 3 C 0.09 2.64 2.03 44.92 0.09 2.73 16 4 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 5 C 0.06 2.00 4.28 86.31 0.37 2.37 16 6 N -0.54 -23.15 4.57 -874.86 -4.00 -27.15 16 7 C 0.18 8.67 1.63 44.17 0.07 8.74 16 8 H -0.01 -0.32 5.39 -2.39 -0.01 -0.33 16 9 C -0.13 -5.36 8.66 71.98 0.62 -4.73 16 10 C -0.50 -28.62 7.43 25.60 0.19 -28.43 16 11 H 0.04 2.31 8.00 -2.91 -0.02 2.29 16 12 C 0.02 1.01 5.47 84.66 0.46 1.48 16 13 N -0.94 -58.97 13.96 21.45 0.30 -58.68 16 14 Si 0.93 44.72 26.88 68.60 1.84 46.57 16 15 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 16 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 17 H -0.25 -11.02 6.72 99.48 0.67 -10.35 16 18 C 0.07 2.97 5.34 86.31 0.46 3.43 16 19 C 0.07 2.25 5.60 86.31 0.48 2.74 16 20 N -0.55 -15.96 4.78 -896.58 -4.29 -20.25 16 21 C 0.03 0.54 8.97 127.69 1.14 1.68 16 22 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.05 1.05 6.75 -2.38 -0.02 1.04 16 24 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.08 1.44 6.33 -2.39 -0.02 1.43 16 27 H 0.09 2.77 4.87 -2.38 -0.01 2.76 16 28 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 1.87 6.78 -2.38 -0.02 1.85 16 30 H 0.04 1.80 7.96 -2.39 -0.02 1.78 16 31 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 33 H 0.06 3.01 6.82 -2.38 -0.02 3.00 16 34 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 2.59 8.06 -2.39 -0.02 2.57 16 37 H 0.03 0.54 8.11 -2.38 -0.02 0.52 16 38 H 0.07 1.42 8.01 -2.39 -0.02 1.41 16 39 H 0.08 1.51 6.60 -2.39 -0.02 1.49 16 Total: -1.00 -64.76 292.40 -0.45 -65.20 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.95 Total: 8.64 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 4.74 Total: -14.34 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -7.99 Total: -106.07 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.84 Total: 46.57 kcal Total: -64.76 -0.45 -65.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251934795.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.432 kcal (2) G-P(sol) polarization free energy of solvation -64.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds