Wall clock time and date at job start Mon Mar 30 2020 03:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47046 * 2 1 4 4 H 1.09002 * 109.47321 * 56.28495 * 3 2 1 5 5 C 1.53008 * 109.47178 * 296.28880 * 3 2 1 6 6 N 1.46901 * 109.47175 * 176.28821 * 3 2 1 7 7 C 1.46951 * 110.99990 * 59.64260 * 6 3 2 8 8 C 1.53052 * 109.36408 * 176.81233 * 7 6 3 9 9 N 1.46955 * 109.36476 * 58.39929 * 8 7 6 10 10 C 1.46893 * 111.00347 * 176.81328 * 9 8 7 11 11 C 1.46961 * 110.88109 * 300.67985 * 9 8 7 12 12 C 1.46956 * 110.99755 * 295.83783 * 6 3 2 13 13 H 1.09000 * 109.48653 * 63.22502 * 12 6 3 14 14 C 1.50700 * 109.49137 * 303.15904 * 12 6 3 15 15 H 1.07997 * 120.00245 * 359.97438 * 14 12 6 16 16 C 1.37877 * 120.00108 * 179.97438 * 14 12 6 17 17 N 1.31521 * 119.99766 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00153 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46851 * 90.00095 * 18 16 14 20 20 H 1.48496 * 109.47178 * 209.99913 * 18 16 14 21 21 H 1.48500 * 109.47144 * 330.00228 * 18 16 14 22 22 H 1.09004 * 109.47077 * 306.08799 * 1 2 3 23 23 H 1.09003 * 109.47482 * 66.09307 * 1 2 3 24 24 H 1.08996 * 109.47047 * 186.09378 * 1 2 3 25 25 H 1.09004 * 109.47134 * 240.00209 * 2 1 3 26 26 H 1.08993 * 109.47322 * 120.00063 * 2 1 3 27 27 H 1.09002 * 109.46680 * 300.00007 * 5 3 2 28 28 H 1.08993 * 109.46993 * 59.99412 * 5 3 2 29 29 H 1.08998 * 109.46936 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.48885 * 296.77534 * 7 6 3 31 31 H 1.08997 * 109.49360 * 56.82135 * 7 6 3 32 32 H 1.08995 * 109.49186 * 178.36154 * 8 7 6 33 33 H 1.09000 * 109.48772 * 298.43298 * 8 7 6 34 34 H 1.09001 * 109.47305 * 56.04726 * 10 9 8 35 35 H 1.09000 * 109.47573 * 176.04461 * 10 9 8 36 36 H 1.09002 * 109.47149 * 296.04480 * 10 9 8 37 37 H 1.09001 * 109.49406 * 179.28564 * 11 9 8 38 38 H 1.09000 * 109.48825 * 299.33336 * 11 9 8 39 39 H 0.96996 * 119.99897 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6233 1.9753 0.8548 5 6 1.6076 2.1364 -1.2934 6 7 3.5063 1.4435 0.0897 7 6 4.1037 0.7252 -1.0446 8 6 5.6289 0.8171 -0.9568 9 7 6.0788 0.2462 0.3204 10 6 7.5450 0.2472 0.4101 11 6 5.4813 0.9646 1.4547 12 6 3.9561 0.8727 1.3669 13 1 3.6508 -0.1720 1.4260 14 6 3.3396 1.6424 2.5065 15 1 2.6799 2.4728 2.3029 16 6 3.6178 1.2863 3.8092 17 7 4.4216 0.2753 4.0571 18 14 2.8542 2.2407 5.2217 19 1 1.5558 1.6225 5.5920 20 1 3.7685 2.2099 6.3914 21 1 2.6312 3.6484 4.8047 22 1 -0.3633 0.6053 0.8305 23 1 -0.3634 0.4165 -0.9395 24 1 -0.3633 -1.0218 0.1091 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.0243 1.6036 -2.1482 28 1 0.5197 2.1355 -1.3599 29 1 1.9713 3.1639 -1.2935 30 1 3.8001 -0.3212 -1.0129 31 1 3.7652 1.1739 -1.9784 32 1 6.0748 0.2604 -1.7810 33 1 5.9343 1.8617 -1.0159 34 1 7.9172 1.2614 0.2657 35 1 7.8492 -0.1150 1.3922 36 1 7.9567 -0.4042 -0.3608 37 1 5.8195 0.5156 2.3885 38 1 5.7853 2.0109 1.4232 39 1 4.6170 0.0245 4.9735 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251952949.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:46 Heat of formation + Delta-G solvation = 7.123506 kcal Electronic energy + Delta-G solvation = -17209.997694 eV Core-core repulsion = 14766.456048 eV Total energy + Delta-G solvation = -2443.541646 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.81450 -35.92553 -33.19607 -31.99211 -29.66490 -28.89294 -26.58769 -25.22802 -23.69854 -22.56368 -21.51279 -19.76410 -18.07329 -16.27106 -15.51293 -14.75655 -14.39039 -14.03753 -13.85066 -13.64206 -13.59083 -13.25167 -12.67478 -12.21917 -11.86669 -11.78597 -11.51197 -11.07508 -11.02021 -10.97091 -10.84236 -10.65874 -10.51799 -10.36981 -10.21817 -9.96746 -9.71772 -9.36683 -8.83731 -8.44731 -7.47016 -7.01413 -6.02263 -4.06595 3.29938 3.36986 3.40773 4.40059 4.84797 5.00004 5.31643 5.49417 5.60762 5.76588 5.81152 5.86744 5.90485 5.96485 6.05238 6.09064 6.14619 6.15289 6.33162 6.37721 6.39961 6.48913 6.57028 6.63078 6.67054 6.83172 6.90863 7.02681 7.10948 7.45440 7.63034 7.79001 7.95606 8.03314 8.21138 8.36875 8.66464 9.01607 9.58482 11.04383 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.013645 C = 0.008617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.213217 B = 2051.538857 C = 3248.541372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.154 4.154 3 C 0.089 3.911 4 H 0.092 0.908 5 C -0.145 4.145 6 N -0.532 5.532 7 C 0.054 3.946 8 C 0.061 3.939 9 N -0.550 5.550 10 C 0.031 3.969 11 C 0.067 3.933 12 C 0.222 3.778 13 H 0.014 0.986 14 C -0.504 4.504 15 H 0.064 0.936 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.894 3.106 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.053 0.947 23 H 0.047 0.953 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.032 0.968 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.029 0.971 34 H 0.014 0.986 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.106 0.894 38 H 0.014 0.986 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.392 0.379 -8.178 8.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.193 4.193 3 C -0.019 4.019 4 H 0.110 0.890 5 C -0.202 4.202 6 N -0.256 5.256 7 C -0.075 4.075 8 C -0.068 4.068 9 N -0.275 5.275 10 C -0.118 4.118 11 C -0.061 4.061 12 C 0.115 3.885 13 H 0.031 0.969 14 C -0.543 4.543 15 H 0.082 0.918 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.032 0.968 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.124 0.876 38 H 0.032 0.968 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.286 0.293 -8.010 8.117 hybrid contribution -0.241 0.423 0.822 0.955 sum -1.526 0.716 -7.188 7.383 Atomic orbital electron populations 1.21717 0.96652 1.00675 1.01050 1.22150 0.95430 0.99696 1.01982 1.21593 0.88598 0.93950 0.97792 0.89035 1.21944 0.99831 1.00731 0.97716 1.62453 1.05872 1.53904 1.03389 1.22093 0.93644 0.96683 0.95099 1.22058 0.95570 0.96924 0.92215 1.62322 1.06395 1.55450 1.03318 1.22241 0.89222 0.98672 1.01651 1.22505 0.96745 0.94162 0.92639 1.19250 0.90452 0.94085 0.84674 0.96886 1.21129 1.27892 1.15468 0.89808 0.91814 1.24946 0.95225 0.95113 0.98786 1.69885 1.35877 1.27220 1.19940 0.86554 0.78997 0.80417 0.81820 1.20737 1.21290 1.19874 0.92746 0.93416 0.93774 0.93181 0.90780 0.93493 0.93084 0.92664 0.94981 0.91843 0.92252 0.95248 0.96752 0.91783 0.92832 0.87572 0.96792 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.48 37.16 0.35 -1.84 16 2 C -0.15 -2.82 4.70 -26.73 -0.13 -2.95 16 3 C 0.09 1.73 2.19 -67.71 -0.15 1.58 16 4 H 0.09 1.97 6.14 -51.93 -0.32 1.65 16 5 C -0.14 -2.29 8.71 37.16 0.32 -1.97 16 6 N -0.53 -11.52 4.51 -219.94 -0.99 -12.51 16 7 C 0.05 1.02 4.82 -3.77 -0.02 1.00 16 8 C 0.06 1.15 5.62 -3.77 -0.02 1.13 16 9 N -0.55 -11.68 4.97 -242.76 -1.21 -12.89 16 10 C 0.03 0.55 9.63 60.06 0.58 1.13 16 11 C 0.07 1.64 4.65 -3.76 -0.02 1.62 16 12 C 0.22 5.57 1.56 -68.81 -0.11 5.47 16 13 H 0.01 0.38 6.49 -51.93 -0.34 0.04 16 14 C -0.50 -13.55 7.88 -34.44 -0.27 -13.82 16 15 H 0.06 1.72 6.47 -52.49 -0.34 1.38 16 16 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 17 N -0.89 -25.01 11.35 55.43 0.63 -24.38 16 18 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.05 0.64 6.84 -51.93 -0.36 0.29 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.88 6.68 -51.93 -0.35 0.53 16 26 H 0.07 1.61 6.39 -51.93 -0.33 1.28 16 27 H 0.05 0.70 6.34 -51.93 -0.33 0.37 16 28 H 0.05 0.71 6.66 -51.93 -0.35 0.37 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.03 0.64 6.56 -51.93 -0.34 0.30 16 31 H 0.06 1.07 6.15 -51.93 -0.32 0.75 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.11 2.88 6.08 -51.93 -0.32 2.57 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 288.55 15.07 4.35 4.35 Total: -1.00 -27.73 288.55 -8.41 -36.14 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.62 Total: 0.31 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 0.45 Total: -7.08 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -1.57 Total: -49.78 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.73 -8.41 -36.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251952949.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.262 kcal (2) G-P(sol) polarization free energy of solvation -27.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds