Wall clock time and date at job start Mon Mar 30 2020 03:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47046 * 2 1 4 4 H 1.09002 * 109.47321 * 56.28495 * 3 2 1 5 5 C 1.53008 * 109.47178 * 296.28880 * 3 2 1 6 6 N 1.46901 * 109.47175 * 176.28821 * 3 2 1 7 7 C 1.46951 * 110.99990 * 59.64260 * 6 3 2 8 8 C 1.53052 * 109.36408 * 176.81233 * 7 6 3 9 9 N 1.46955 * 109.36476 * 58.39929 * 8 7 6 10 10 C 1.46893 * 111.00347 * 176.81328 * 9 8 7 11 11 C 1.46961 * 110.88109 * 300.67985 * 9 8 7 12 12 C 1.46956 * 110.99755 * 295.83783 * 6 3 2 13 13 H 1.09000 * 109.48653 * 63.22502 * 12 6 3 14 14 C 1.50700 * 109.49137 * 303.15904 * 12 6 3 15 15 H 1.07997 * 120.00245 * 359.97438 * 14 12 6 16 16 C 1.37877 * 120.00108 * 179.97438 * 14 12 6 17 17 N 1.31521 * 119.99766 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00153 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46851 * 90.00095 * 18 16 14 20 20 H 1.48496 * 109.47178 * 209.99913 * 18 16 14 21 21 H 1.48500 * 109.47144 * 330.00228 * 18 16 14 22 22 H 1.09004 * 109.47077 * 306.08799 * 1 2 3 23 23 H 1.09003 * 109.47482 * 66.09307 * 1 2 3 24 24 H 1.08996 * 109.47047 * 186.09378 * 1 2 3 25 25 H 1.09004 * 109.47134 * 240.00209 * 2 1 3 26 26 H 1.08993 * 109.47322 * 120.00063 * 2 1 3 27 27 H 1.09002 * 109.46680 * 300.00007 * 5 3 2 28 28 H 1.08993 * 109.46993 * 59.99412 * 5 3 2 29 29 H 1.08998 * 109.46936 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.48885 * 296.77534 * 7 6 3 31 31 H 1.08997 * 109.49360 * 56.82135 * 7 6 3 32 32 H 1.08995 * 109.49186 * 178.36154 * 8 7 6 33 33 H 1.09000 * 109.48772 * 298.43298 * 8 7 6 34 34 H 1.09001 * 109.47305 * 56.04726 * 10 9 8 35 35 H 1.09000 * 109.47573 * 176.04461 * 10 9 8 36 36 H 1.09002 * 109.47149 * 296.04480 * 10 9 8 37 37 H 1.09001 * 109.49406 * 179.28564 * 11 9 8 38 38 H 1.09000 * 109.48825 * 299.33336 * 11 9 8 39 39 H 0.96996 * 119.99897 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6233 1.9753 0.8548 5 6 1.6076 2.1364 -1.2934 6 7 3.5063 1.4435 0.0897 7 6 4.1037 0.7252 -1.0446 8 6 5.6289 0.8171 -0.9568 9 7 6.0788 0.2462 0.3204 10 6 7.5450 0.2472 0.4101 11 6 5.4813 0.9646 1.4547 12 6 3.9561 0.8727 1.3669 13 1 3.6508 -0.1720 1.4260 14 6 3.3396 1.6424 2.5065 15 1 2.6799 2.4728 2.3029 16 6 3.6178 1.2863 3.8092 17 7 4.4216 0.2753 4.0571 18 14 2.8542 2.2407 5.2217 19 1 1.5558 1.6225 5.5920 20 1 3.7685 2.2099 6.3914 21 1 2.6312 3.6484 4.8047 22 1 -0.3633 0.6053 0.8305 23 1 -0.3634 0.4165 -0.9395 24 1 -0.3633 -1.0218 0.1091 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.0243 1.6036 -2.1482 28 1 0.5197 2.1355 -1.3599 29 1 1.9713 3.1639 -1.2935 30 1 3.8001 -0.3212 -1.0129 31 1 3.7652 1.1739 -1.9784 32 1 6.0748 0.2604 -1.7810 33 1 5.9343 1.8617 -1.0159 34 1 7.9172 1.2614 0.2657 35 1 7.8492 -0.1150 1.3922 36 1 7.9567 -0.4042 -0.3608 37 1 5.8195 0.5156 2.3885 38 1 5.7853 2.0109 1.4232 39 1 4.6170 0.0245 4.9735 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251952949.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:46 Heat of formation + Delta-G solvation = -12.112194 kcal Electronic energy + Delta-G solvation = -17210.831817 eV Core-core repulsion = 14766.456048 eV Total energy + Delta-G solvation = -2444.375769 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.48783 -37.50202 -35.17482 -33.56843 -31.50822 -30.28215 -28.12679 -27.22651 -25.16445 -24.10351 -23.31099 -21.42235 -19.77670 -18.23977 -17.28414 -16.44223 -16.10193 -15.61316 -15.45732 -15.33666 -15.19727 -14.85268 -14.13588 -14.08212 -13.25631 -13.19513 -12.88962 -12.88202 -12.70694 -12.52806 -12.45003 -12.30894 -12.21186 -12.01566 -11.99407 -11.61953 -11.39439 -11.02579 -10.76369 -10.50148 -9.15224 -8.76407 -8.10943 -6.22315 1.40531 1.41692 1.52048 2.41601 3.10675 3.31021 3.42530 4.05760 4.16193 4.29094 4.33232 4.42970 4.50065 4.54800 4.60480 4.68577 4.74890 4.79136 4.80492 4.95569 4.97461 5.02846 5.07460 5.12015 5.18249 5.25807 5.28771 5.38953 5.55264 5.63235 5.69776 5.76168 6.13800 6.29407 6.34829 6.55961 6.83469 6.94832 7.46738 8.94860 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.013645 C = 0.008617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.213217 B = 2051.538857 C = 3248.541372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 C 0.085 3.915 4 H 0.062 0.938 5 C -0.133 4.133 6 N -0.542 5.542 7 C 0.054 3.946 8 C 0.060 3.940 9 N -0.566 5.566 10 C 0.032 3.968 11 C 0.083 3.917 12 C 0.232 3.768 13 H -0.027 1.027 14 C -0.517 4.517 15 H 0.057 0.943 16 C 0.014 3.986 17 N -0.917 5.917 18 Si 0.956 3.044 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.269 1.269 22 H 0.046 0.954 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.027 0.973 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.023 0.977 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.027 0.973 34 H 0.021 0.979 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.075 0.925 38 H -0.006 1.006 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 0.915 -10.042 10.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.184 4.184 3 C -0.023 4.023 4 H 0.080 0.920 5 C -0.191 4.191 6 N -0.266 5.266 7 C -0.075 4.075 8 C -0.068 4.068 9 N -0.291 5.291 10 C -0.116 4.116 11 C -0.046 4.046 12 C 0.125 3.875 13 H -0.009 1.009 14 C -0.556 4.556 15 H 0.075 0.925 16 C -0.185 4.185 17 N -0.557 5.557 18 Si 0.781 3.219 19 H -0.202 1.202 20 H -0.209 1.209 21 H -0.194 1.194 22 H 0.065 0.935 23 H 0.094 0.906 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.045 0.955 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.012 0.988 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.888 0.832 -9.897 10.110 hybrid contribution -0.035 0.223 1.349 1.368 sum -1.923 1.055 -8.548 8.825 Atomic orbital electron populations 1.21673 0.94054 1.01517 1.02211 1.22020 0.97674 0.98592 1.00143 1.21646 0.87236 0.94570 0.98892 0.91956 1.21847 1.01392 1.00151 0.95664 1.62422 1.07576 1.53874 1.02690 1.22213 0.93934 0.96130 0.95191 1.22184 0.95514 0.97252 0.91814 1.62265 1.08421 1.55110 1.03267 1.22300 0.87145 0.99811 1.02362 1.22087 0.96675 0.92799 0.93004 1.18928 0.90716 0.91612 0.86278 1.00947 1.21376 1.27900 1.15356 0.90943 0.92465 1.25692 0.95661 0.95960 1.01140 1.70025 1.36902 1.28485 1.20300 0.85589 0.78248 0.79216 0.78805 1.20180 1.20907 1.19377 0.93518 0.90643 0.92762 0.92189 0.95379 0.91970 0.90757 0.92826 0.95927 0.88673 0.88752 0.95470 0.96019 0.92729 0.89651 0.90726 0.98760 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.48 71.98 0.68 -3.30 16 2 C -0.15 -5.32 4.70 30.60 0.14 -5.17 16 3 C 0.09 3.26 2.19 44.92 0.10 3.36 16 4 H 0.06 2.73 6.14 -2.39 -0.01 2.72 16 5 C -0.13 -3.84 8.71 71.98 0.63 -3.21 16 6 N -0.54 -23.50 4.51 -849.76 -3.83 -27.33 16 7 C 0.05 1.96 4.82 86.31 0.42 2.37 16 8 C 0.06 2.16 5.62 86.31 0.48 2.64 16 9 N -0.57 -23.88 4.97 -921.95 -4.58 -28.46 16 10 C 0.03 1.10 9.63 127.69 1.23 2.33 16 11 C 0.08 4.21 4.65 86.31 0.40 4.61 16 12 C 0.23 12.11 1.56 44.18 0.07 12.18 16 13 H -0.03 -1.60 6.49 -2.39 -0.02 -1.61 16 14 C -0.52 -28.82 7.88 25.60 0.20 -28.61 16 15 H 0.06 3.19 6.47 -2.91 -0.02 3.17 16 16 C 0.01 0.81 5.30 84.65 0.45 1.25 16 17 N -0.92 -53.52 11.35 21.45 0.24 -53.28 16 18 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H 0.05 1.41 8.14 -2.38 -0.02 1.40 16 23 H 0.07 1.78 6.84 -2.39 -0.02 1.77 16 24 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.06 2.04 6.68 -2.39 -0.02 2.03 16 26 H 0.03 1.27 6.39 -2.39 -0.02 1.25 16 27 H 0.06 1.60 6.34 -2.39 -0.02 1.59 16 28 H 0.07 1.80 6.66 -2.39 -0.02 1.79 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.02 0.87 6.56 -2.39 -0.02 0.86 16 31 H 0.10 2.87 6.15 -2.39 -0.01 2.86 16 32 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.05 1.96 8.07 -2.39 -0.02 1.94 16 36 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.07 4.25 6.08 -2.39 -0.01 4.24 16 38 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 39 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -62.29 288.55 -0.34 -62.63 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.00 Total: 11.81 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 4.80 Total: -11.55 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -8.17 Total: -109.07 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -62.29 -0.34 -62.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251952949.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.520 kcal (2) G-P(sol) polarization free energy of solvation -62.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds