Wall clock time and date at job start Mon Mar 30 2020 03:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46929 * 2 1 4 4 H 1.08991 * 109.47196 * 56.70640 * 3 2 1 5 5 C 1.53001 * 109.47064 * 176.70535 * 3 2 1 6 6 N 1.46906 * 109.47014 * 296.70376 * 3 2 1 7 7 C 1.47901 * 110.99750 * 296.34397 * 6 3 2 8 8 C 1.50805 * 108.49063 * 153.76581 * 7 6 3 9 9 C 1.53693 * 112.10131 * 92.56012 * 8 7 6 10 10 N 1.48076 * 112.46337 * 318.55531 * 9 8 7 11 11 C 1.44440 * 113.80151 * 318.34367 * 10 9 8 12 12 C 1.40010 * 110.99566 * 168.36804 * 6 3 2 13 13 H 1.09003 * 108.96536 * 67.43216 * 12 6 3 14 14 C 1.50699 * 108.96414 * 308.67576 * 12 6 3 15 15 H 1.08002 * 119.99820 * 353.26113 * 14 12 6 16 16 C 1.37874 * 120.00155 * 173.25398 * 14 12 6 17 17 N 1.31511 * 119.99813 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99905 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47210 * 60.00202 * 18 16 14 20 20 H 1.48500 * 109.46904 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47038 * 299.99913 * 18 16 14 22 22 H 1.09006 * 109.47122 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47230 * 300.00164 * 1 2 3 24 24 H 1.08995 * 109.47011 * 60.00266 * 1 2 3 25 25 H 1.08995 * 109.46758 * 239.99810 * 2 1 3 26 26 H 1.09003 * 109.46883 * 120.00018 * 2 1 3 27 27 H 1.09005 * 109.47265 * 59.99500 * 5 3 2 28 28 H 1.08993 * 109.47450 * 179.97438 * 5 3 2 29 29 H 1.09000 * 109.47200 * 300.00146 * 5 3 2 30 30 H 1.09003 * 109.63722 * 273.46408 * 7 6 3 31 31 H 1.09004 * 109.63934 * 33.86355 * 7 6 3 32 32 H 1.09001 * 108.95272 * 213.23167 * 8 7 6 33 33 H 1.08994 * 108.95326 * 331.87864 * 8 7 6 34 34 H 1.09002 * 108.88564 * 79.32266 * 9 8 7 35 35 H 1.08998 * 108.88704 * 197.79199 * 9 8 7 36 36 H 1.00900 * 110.99994 * 192.19346 * 10 9 8 37 37 H 1.09002 * 109.62723 * 334.40905 * 11 10 9 38 38 H 1.08994 * 109.44634 * 214.08062 * 11 10 9 39 39 H 0.97009 * 119.99444 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6293 1.9730 0.8589 5 6 3.5678 1.4433 0.0829 6 7 1.6164 2.1116 -1.2373 7 6 2.2267 1.4705 -2.4222 8 6 1.3303 1.7107 -3.6109 9 6 1.7308 2.9725 -4.3916 10 7 2.0913 4.0987 -3.5003 11 6 1.2173 4.2419 -2.3593 12 6 1.8329 3.4927 -1.1602 13 1 2.9060 3.6823 -1.1372 14 6 1.2165 4.0148 0.1120 15 1 0.6187 3.3613 0.7302 16 6 1.4157 5.3265 0.4869 17 7 2.1432 6.1223 -0.2660 18 14 0.6522 5.9733 2.0643 19 1 1.1609 5.1893 3.2183 20 1 1.0133 7.4031 2.2390 21 1 -0.8251 5.8421 1.9893 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.9786 0.9126 -0.7761 28 1 3.9311 2.4709 0.0824 29 1 3.8821 0.9468 1.0009 30 1 3.2081 1.9062 -2.6097 31 1 2.3289 0.3994 -2.2473 32 1 1.3869 0.8495 -4.2767 33 1 0.3031 1.8204 -3.2632 34 1 2.5850 2.7381 -5.0269 35 1 0.8963 3.2762 -5.0236 36 1 2.1568 4.9625 -4.0175 37 1 0.2399 3.8188 -2.5914 38 1 1.1109 5.2986 -2.1141 39 1 2.2831 7.0453 -0.0024 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251953042.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:16 Heat of formation + Delta-G solvation = 9.912146 kcal Electronic energy + Delta-G solvation = -17447.152846 eV Core-core repulsion = 15003.732124 eV Total energy + Delta-G solvation = -2443.420722 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.89571 -35.51121 -33.28003 -31.81991 -30.82339 -28.88791 -26.30960 -25.30809 -23.41857 -22.89985 -20.56303 -19.20728 -18.36691 -16.34620 -15.92209 -14.74287 -14.61262 -14.04156 -13.86137 -13.66086 -13.05423 -12.74606 -12.70204 -12.44755 -12.11628 -11.31560 -11.15145 -11.07630 -10.98258 -10.81149 -10.59678 -10.54343 -10.44515 -10.12609 -9.98079 -9.92070 -9.66555 -9.36746 -8.77147 -8.37181 -7.29385 -6.78828 -5.94450 -3.99073 3.33963 3.38774 3.41499 4.44943 5.07553 5.12348 5.39788 5.49742 5.59075 5.70567 5.79941 5.92224 5.95283 6.14664 6.18605 6.25695 6.32774 6.43587 6.43806 6.53953 6.56420 6.63077 6.71540 6.76480 6.90214 6.95869 7.00466 7.05203 7.23443 7.46283 7.82182 7.92057 8.23958 8.24810 8.41073 8.63654 8.94238 9.19332 9.67093 11.11173 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.021221 B = 0.012691 C = 0.009284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.122472 B = 2205.823417 C = 3015.369367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 C 0.087 3.913 4 H 0.100 0.900 5 C -0.175 4.175 6 N -0.531 5.531 7 C 0.066 3.934 8 C -0.114 4.114 9 C 0.068 3.932 10 N -0.701 5.701 11 C 0.082 3.918 12 C 0.231 3.769 13 H 0.005 0.995 14 C -0.507 4.507 15 H 0.062 0.938 16 C 0.060 3.940 17 N -0.886 5.886 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.278 1.278 22 H 0.033 0.967 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.012 0.988 36 H 0.329 0.671 37 H 0.014 0.986 38 H 0.087 0.913 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.745 -8.110 -3.583 8.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C -0.021 4.021 4 H 0.118 0.882 5 C -0.234 4.234 6 N -0.255 5.255 7 C -0.062 4.062 8 C -0.153 4.153 9 C -0.061 4.061 10 N -0.332 5.332 11 C -0.048 4.048 12 C 0.122 3.878 13 H 0.023 0.977 14 C -0.546 4.546 15 H 0.080 0.920 16 C -0.141 4.141 17 N -0.525 5.525 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.204 1.204 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.031 0.969 36 H 0.146 0.854 37 H 0.032 0.968 38 H 0.106 0.894 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.742 -8.323 -3.301 8.984 hybrid contribution -0.269 1.025 0.410 1.136 sum -1.011 -7.298 -2.891 7.914 Atomic orbital electron populations 1.21594 0.95842 0.99251 1.02792 1.21661 0.96413 0.97177 1.00109 1.21690 0.92015 0.93092 0.95302 0.88188 1.22363 0.99033 1.02178 0.99810 1.59466 1.59710 1.06021 1.00260 1.21646 0.96159 0.97469 0.90916 1.21389 1.01310 0.95780 0.96782 1.22135 0.97337 0.92467 0.94176 1.59181 1.56866 1.06227 1.10955 1.21882 0.91510 1.02572 0.88818 1.18033 0.95334 0.81731 0.92724 0.97709 1.21296 1.31592 0.95631 1.06055 0.91983 1.24953 0.95327 0.97085 0.96762 1.69963 1.38844 1.06125 1.37534 0.86728 0.79729 0.77757 0.84170 1.20382 1.21503 1.20378 0.94811 0.93314 0.91490 0.92915 0.93191 0.94025 0.91805 0.93894 0.94402 0.92512 0.92871 0.91330 0.92828 0.96937 0.85418 0.96802 0.89448 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.79 37.16 0.36 -1.82 16 2 C -0.12 -1.88 5.30 -26.73 -0.14 -2.02 16 3 C 0.09 1.71 1.99 -67.71 -0.14 1.58 16 4 H 0.10 2.22 5.53 -51.93 -0.29 1.93 16 5 C -0.17 -3.31 8.65 37.16 0.32 -2.99 16 6 N -0.53 -11.18 3.22 -224.91 -0.72 -11.91 16 7 C 0.07 1.23 3.80 -4.37 -0.02 1.21 16 8 C -0.11 -1.96 5.36 -27.47 -0.15 -2.11 16 9 C 0.07 1.18 6.49 -2.82 -0.02 1.16 16 10 N -0.70 -14.49 6.12 -113.58 -0.70 -15.19 16 11 C 0.08 1.93 5.36 -4.51 -0.02 1.91 16 12 C 0.23 5.69 1.22 -71.79 -0.09 5.60 16 13 H 0.01 0.15 6.77 -51.93 -0.35 -0.20 16 14 C -0.51 -13.47 7.37 -34.44 -0.25 -13.72 16 15 H 0.06 1.65 6.32 -52.49 -0.33 1.32 16 16 C 0.06 1.63 5.17 -17.82 -0.09 1.54 16 17 N -0.89 -24.91 11.71 55.43 0.65 -24.26 16 18 Si 0.89 21.09 29.54 -169.99 -5.02 16.06 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.07 1.16 7.70 -51.93 -0.40 0.76 16 25 H 0.05 0.82 6.02 -51.93 -0.31 0.51 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.73 6.89 -51.93 -0.36 0.38 16 28 H 0.06 1.40 6.87 -51.93 -0.36 1.04 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.78 7.30 -51.93 -0.38 0.40 16 31 H 0.06 0.96 5.56 -51.93 -0.29 0.67 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.28 7.23 -51.93 -0.38 0.90 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.33 6.35 8.89 -39.29 -0.35 6.00 16 37 H 0.01 0.33 6.93 -51.93 -0.36 -0.03 16 38 H 0.09 2.31 6.20 -51.93 -0.32 1.99 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 285.93 15.07 4.31 4.31 Total: -1.00 -27.23 285.93 -8.28 -35.51 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.57 Total: 5.14 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.23 Total: -9.66 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.77 Total: -51.36 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.23 -8.28 -35.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251953042.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.418 kcal (2) G-P(sol) polarization free energy of solvation -27.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds