Wall clock time and date at job start Mon Mar 30 2020 03:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46929 * 2 1 4 4 H 1.08991 * 109.47196 * 56.70640 * 3 2 1 5 5 C 1.53001 * 109.47064 * 176.70535 * 3 2 1 6 6 N 1.46906 * 109.47014 * 296.70376 * 3 2 1 7 7 C 1.47901 * 110.99750 * 296.34397 * 6 3 2 8 8 C 1.50805 * 108.49063 * 153.76581 * 7 6 3 9 9 C 1.53693 * 112.10131 * 92.56012 * 8 7 6 10 10 N 1.48076 * 112.46337 * 318.55531 * 9 8 7 11 11 C 1.44440 * 113.80151 * 318.34367 * 10 9 8 12 12 C 1.40010 * 110.99566 * 168.36804 * 6 3 2 13 13 H 1.09003 * 108.96536 * 67.43216 * 12 6 3 14 14 C 1.50699 * 108.96414 * 308.67576 * 12 6 3 15 15 H 1.08002 * 119.99820 * 353.26113 * 14 12 6 16 16 C 1.37874 * 120.00155 * 173.25398 * 14 12 6 17 17 N 1.31511 * 119.99813 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99905 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47210 * 60.00202 * 18 16 14 20 20 H 1.48500 * 109.46904 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47038 * 299.99913 * 18 16 14 22 22 H 1.09006 * 109.47122 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47230 * 300.00164 * 1 2 3 24 24 H 1.08995 * 109.47011 * 60.00266 * 1 2 3 25 25 H 1.08995 * 109.46758 * 239.99810 * 2 1 3 26 26 H 1.09003 * 109.46883 * 120.00018 * 2 1 3 27 27 H 1.09005 * 109.47265 * 59.99500 * 5 3 2 28 28 H 1.08993 * 109.47450 * 179.97438 * 5 3 2 29 29 H 1.09000 * 109.47200 * 300.00146 * 5 3 2 30 30 H 1.09003 * 109.63722 * 273.46408 * 7 6 3 31 31 H 1.09004 * 109.63934 * 33.86355 * 7 6 3 32 32 H 1.09001 * 108.95272 * 213.23167 * 8 7 6 33 33 H 1.08994 * 108.95326 * 331.87864 * 8 7 6 34 34 H 1.09002 * 108.88564 * 79.32266 * 9 8 7 35 35 H 1.08998 * 108.88704 * 197.79199 * 9 8 7 36 36 H 1.00900 * 110.99994 * 192.19346 * 10 9 8 37 37 H 1.09002 * 109.62723 * 334.40905 * 11 10 9 38 38 H 1.08994 * 109.44634 * 214.08062 * 11 10 9 39 39 H 0.97009 * 119.99444 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6293 1.9730 0.8589 5 6 3.5678 1.4433 0.0829 6 7 1.6164 2.1116 -1.2373 7 6 2.2267 1.4705 -2.4222 8 6 1.3303 1.7107 -3.6109 9 6 1.7308 2.9725 -4.3916 10 7 2.0913 4.0987 -3.5003 11 6 1.2173 4.2419 -2.3593 12 6 1.8329 3.4927 -1.1602 13 1 2.9060 3.6823 -1.1372 14 6 1.2165 4.0148 0.1120 15 1 0.6187 3.3613 0.7302 16 6 1.4157 5.3265 0.4869 17 7 2.1432 6.1223 -0.2660 18 14 0.6522 5.9733 2.0643 19 1 1.1609 5.1893 3.2183 20 1 1.0133 7.4031 2.2390 21 1 -0.8251 5.8421 1.9893 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.9786 0.9126 -0.7761 28 1 3.9311 2.4709 0.0824 29 1 3.8821 0.9468 1.0009 30 1 3.2081 1.9062 -2.6097 31 1 2.3289 0.3994 -2.2473 32 1 1.3869 0.8495 -4.2767 33 1 0.3031 1.8204 -3.2632 34 1 2.5850 2.7381 -5.0269 35 1 0.8963 3.2762 -5.0236 36 1 2.1568 4.9625 -4.0175 37 1 0.2399 3.8188 -2.5914 38 1 1.1109 5.2986 -2.1141 39 1 2.2831 7.0453 -0.0024 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251953042.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:16 Heat of formation + Delta-G solvation = -8.218864 kcal Electronic energy + Delta-G solvation = -17447.939065 eV Core-core repulsion = 15003.732124 eV Total energy + Delta-G solvation = -2444.206941 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.55455 -37.07015 -35.18913 -33.34431 -32.58048 -30.41204 -28.15926 -26.94908 -25.22644 -24.36759 -22.07970 -20.96893 -19.96450 -18.18708 -17.74019 -16.50843 -16.27794 -15.70697 -15.56632 -15.21430 -14.53608 -14.38783 -14.20634 -13.92300 -13.87206 -12.97081 -12.84196 -12.79686 -12.60226 -12.44404 -12.26951 -12.21843 -11.90907 -11.80422 -11.66553 -11.46522 -11.33694 -10.98384 -10.64410 -10.41878 -8.95861 -8.55261 -8.02758 -6.13626 1.42634 1.43172 1.50376 2.45279 3.21161 3.51453 3.63059 4.08450 4.15964 4.31768 4.40165 4.51208 4.57773 4.66256 4.72467 4.76108 4.88202 4.95401 4.99937 5.05897 5.09465 5.12552 5.19839 5.25262 5.30297 5.37047 5.48271 5.55031 5.67945 5.73505 5.76704 5.91824 6.30270 6.56234 6.66353 6.79545 7.10379 7.21397 7.59188 9.01502 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.021221 B = 0.012691 C = 0.009284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.122472 B = 2205.823417 C = 3015.369367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 C 0.082 3.918 4 H 0.068 0.932 5 C -0.165 4.165 6 N -0.534 5.534 7 C 0.069 3.931 8 C -0.113 4.113 9 C 0.066 3.934 10 N -0.713 5.713 11 C 0.098 3.902 12 C 0.247 3.753 13 H -0.042 1.042 14 C -0.516 4.516 15 H 0.058 0.942 16 C 0.014 3.986 17 N -0.913 5.913 18 Si 0.947 3.053 19 H -0.274 1.274 20 H -0.288 1.288 21 H -0.273 1.273 22 H 0.062 0.938 23 H 0.036 0.964 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.021 0.979 29 H 0.064 0.936 30 H 0.017 0.983 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.028 0.972 36 H 0.335 0.665 37 H 0.009 0.991 38 H 0.054 0.946 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.232 -10.232 -3.977 11.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.144 4.144 3 C -0.026 4.026 4 H 0.086 0.914 5 C -0.224 4.224 6 N -0.258 5.258 7 C -0.058 4.058 8 C -0.151 4.151 9 C -0.063 4.063 10 N -0.345 5.345 11 C -0.032 4.032 12 C 0.137 3.863 13 H -0.025 1.025 14 C -0.555 4.555 15 H 0.076 0.924 16 C -0.185 4.185 17 N -0.553 5.553 18 Si 0.774 3.226 19 H -0.199 1.199 20 H -0.214 1.214 21 H -0.198 1.198 22 H 0.081 0.919 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.035 0.965 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.046 0.954 36 H 0.153 0.847 37 H 0.027 0.973 38 H 0.073 0.927 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.233 -10.467 -3.703 11.171 hybrid contribution -0.083 1.644 0.505 1.722 sum -1.317 -8.822 -3.198 9.476 Atomic orbital electron populations 1.21543 0.95532 1.00644 1.01341 1.21585 0.96573 0.94444 1.01771 1.21719 0.92298 0.94985 0.93573 0.91364 1.22249 0.98619 0.99938 1.01584 1.59465 1.60061 1.04367 1.01885 1.21715 0.95266 0.98372 0.90484 1.21412 0.99779 0.97118 0.96751 1.22269 0.98831 0.91308 0.93856 1.59103 1.56321 1.07796 1.11271 1.21486 0.91625 1.00231 0.89893 1.17712 0.92122 0.83990 0.92471 1.02502 1.21583 1.31231 0.95759 1.06962 0.92436 1.25649 0.95864 0.97420 0.99595 1.70100 1.40060 1.06157 1.38990 0.85784 0.79040 0.77042 0.80777 1.19917 1.21368 1.19817 0.91934 0.94482 0.93267 0.91435 0.91184 0.92620 0.95977 0.91676 0.96505 0.89990 0.89017 0.92800 0.90757 0.95421 0.84741 0.97304 0.92730 0.93390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 9.79 71.98 0.70 -3.22 16 2 C -0.11 -3.16 5.30 30.60 0.16 -2.99 16 3 C 0.08 3.20 1.99 44.91 0.09 3.29 16 4 H 0.07 3.08 5.53 -2.39 -0.01 3.07 16 5 C -0.17 -6.20 8.65 71.98 0.62 -5.57 16 6 N -0.53 -22.50 3.22 -865.48 -2.79 -25.29 16 7 C 0.07 2.46 3.80 85.40 0.32 2.78 16 8 C -0.11 -3.58 5.36 30.11 0.16 -3.42 16 9 C 0.07 2.15 6.49 86.31 0.56 2.71 16 10 N -0.71 -29.59 6.12 -513.26 -3.14 -32.73 16 11 C 0.10 4.77 5.36 87.17 0.47 5.24 16 12 C 0.25 12.56 1.22 45.82 0.06 12.62 16 13 H -0.04 -2.53 6.77 -2.39 -0.02 -2.55 16 14 C -0.52 -28.32 7.37 25.60 0.19 -28.14 16 15 H 0.06 3.15 6.32 -2.91 -0.02 3.13 16 16 C 0.01 0.76 5.17 84.65 0.44 1.19 16 17 N -0.91 -53.23 11.71 21.45 0.25 -52.98 16 18 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 23 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.05 1.62 7.70 -2.39 -0.02 1.60 16 25 H 0.07 1.83 6.02 -2.39 -0.01 1.82 16 26 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 27 H 0.05 1.90 6.89 -2.38 -0.02 1.88 16 28 H 0.02 0.98 6.87 -2.39 -0.02 0.96 16 29 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.02 0.68 7.30 -2.39 -0.02 0.66 16 31 H 0.08 2.50 5.56 -2.39 -0.01 2.49 16 32 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.05 1.89 7.23 -2.39 -0.02 1.88 16 34 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.34 13.04 8.89 -89.69 -0.80 12.24 16 37 H 0.01 0.43 6.93 -2.39 -0.02 0.41 16 38 H 0.05 3.00 6.20 -2.39 -0.01 2.98 16 39 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 Total: -1.00 -60.84 285.93 0.35 -60.49 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.22 Total: 19.85 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 3.77 Total: -15.51 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -5.68 Total: -111.00 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -60.84 0.35 -60.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251953042.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.270 kcal (2) G-P(sol) polarization free energy of solvation -60.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds