Wall clock time and date at job start Mon Mar 30 2020 03:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46828 * 2 1 4 4 H 1.09000 * 109.47084 * 305.40529 * 3 2 1 5 5 C 1.53000 * 109.47126 * 185.40581 * 3 2 1 6 6 N 1.46898 * 109.46967 * 65.40309 * 3 2 1 7 7 C 1.47904 * 111.00116 * 43.92375 * 6 3 2 8 8 C 1.50801 * 108.49793 * 153.76250 * 7 6 3 9 9 C 1.53697 * 112.09930 * 92.55537 * 8 7 6 10 10 N 1.48066 * 112.46757 * 318.55904 * 9 8 7 11 11 C 1.44578 * 113.85803 * 318.31943 * 10 9 8 12 12 C 1.40009 * 111.00342 * 275.94066 * 6 3 2 13 13 H 1.08997 * 108.96138 * 67.51720 * 12 6 3 14 14 C 1.50698 * 108.96228 * 308.77110 * 12 6 3 15 15 H 1.07998 * 119.99751 * 353.74486 * 14 12 6 16 16 C 1.37874 * 120.00363 * 174.02899 * 14 12 6 17 17 N 1.31518 * 119.99994 * 359.72260 * 16 14 12 18 18 Si 1.86793 * 120.00406 * 179.72047 * 16 14 12 19 19 H 1.48504 * 109.47198 * 89.99601 * 18 16 14 20 20 H 1.48499 * 109.47554 * 209.99967 * 18 16 14 21 21 H 1.48508 * 109.47181 * 330.00073 * 18 16 14 22 22 H 1.09001 * 109.46749 * 282.69874 * 1 2 3 23 23 H 1.08991 * 109.47682 * 42.70464 * 1 2 3 24 24 H 1.09006 * 109.46983 * 162.70559 * 1 2 3 25 25 H 1.09003 * 109.47116 * 240.00373 * 2 1 3 26 26 H 1.08992 * 109.47078 * 120.00151 * 2 1 3 27 27 H 1.08997 * 109.47109 * 67.33731 * 5 3 2 28 28 H 1.08996 * 109.46992 * 187.34572 * 5 3 2 29 29 H 1.09003 * 109.46655 * 307.34240 * 5 3 2 30 30 H 1.09008 * 109.62871 * 273.46334 * 7 6 3 31 31 H 1.09005 * 109.63433 * 33.85147 * 7 6 3 32 32 H 1.09001 * 108.95511 * 213.23579 * 8 7 6 33 33 H 1.09005 * 108.95165 * 331.87808 * 8 7 6 34 34 H 1.08999 * 108.87865 * 79.32995 * 9 8 7 35 35 H 1.08999 * 108.87741 * 197.78587 * 9 8 7 36 36 H 1.00892 * 110.99812 * 192.19401 * 10 9 8 37 37 H 1.08994 * 109.57511 * 334.40519 * 11 10 9 38 38 H 1.09001 * 109.56974 * 214.03912 * 11 10 9 39 39 H 0.96995 * 120.00586 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5997 1.9835 -0.8376 5 6 3.5639 1.4448 -0.1359 6 7 1.6596 2.0963 1.2593 7 6 1.9009 1.2039 2.4138 8 6 2.1285 2.0554 3.6374 9 6 0.8277 2.3076 4.4164 10 7 -0.3202 2.5896 3.5248 11 6 0.0000 3.4622 2.4174 12 6 0.3550 2.5996 1.1894 13 1 -0.3438 1.7652 1.1303 14 6 0.2202 3.4395 -0.0545 15 1 1.0883 3.6475 -0.6623 16 6 -1.0103 3.9473 -0.4135 17 7 -2.0676 3.6942 0.3267 18 14 -1.1760 4.9949 -1.9511 19 1 -1.4739 4.1221 -3.1151 20 1 -2.2804 5.9708 -1.7687 21 1 0.0947 5.7248 -2.1922 22 1 -0.3633 0.2259 1.0026 23 1 -0.3634 0.7551 -0.6969 24 1 -0.3633 -0.9813 -0.3055 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.8410 1.0793 -1.1247 28 1 3.9388 2.4599 -0.0054 29 1 3.9975 0.7966 0.6257 30 1 1.0326 0.5636 2.5695 31 1 2.7802 0.5884 2.2235 32 1 2.8410 1.5525 4.2913 33 1 2.5481 3.0131 3.3292 34 1 0.6000 1.4270 5.0170 35 1 0.9747 3.1580 5.0822 36 1 -1.1064 2.9437 4.0486 37 1 0.8512 4.0897 2.6812 38 1 -0.8607 4.0897 2.1863 39 1 -2.9333 4.0511 0.0740 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251953043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:18 Heat of formation + Delta-G solvation = 17.575497 kcal Electronic energy + Delta-G solvation = -17620.728764 eV Core-core repulsion = 15177.640350 eV Total energy + Delta-G solvation = -2443.088414 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.05308 -35.48863 -33.18803 -31.45963 -30.64977 -29.45178 -26.31285 -25.36171 -23.37929 -22.68092 -20.37797 -19.17125 -18.48819 -16.40598 -15.99708 -14.72478 -14.63975 -14.12702 -13.83544 -13.56797 -12.93471 -12.83204 -12.63632 -12.23187 -11.79145 -11.36499 -11.20207 -11.01759 -10.90854 -10.81528 -10.69137 -10.50543 -10.24846 -10.02763 -9.96783 -9.78166 -9.64880 -9.41982 -8.75663 -8.35978 -7.28800 -6.66780 -5.93885 -3.97319 3.32059 3.39626 3.43191 4.45280 5.09189 5.13067 5.39143 5.54786 5.64631 5.70790 5.87121 5.96191 5.97209 6.18298 6.22840 6.30333 6.36734 6.41397 6.51416 6.56470 6.66448 6.68930 6.76615 6.80657 6.94081 6.97787 7.03613 7.20178 7.30605 7.49907 7.86664 7.95837 8.26342 8.27387 8.42448 8.65892 8.96731 9.21720 9.67896 11.11182 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022577 B = 0.012749 C = 0.009901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.921203 B = 2195.655007 C = 2827.454492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.144 4.144 3 C 0.080 3.920 4 H 0.105 0.895 5 C -0.137 4.137 6 N -0.534 5.534 7 C 0.070 3.930 8 C -0.116 4.116 9 C 0.068 3.932 10 N -0.701 5.701 11 C 0.079 3.921 12 C 0.211 3.789 13 H 0.032 0.968 14 C -0.504 4.504 15 H 0.061 0.939 16 C 0.061 3.939 17 N -0.885 5.885 18 Si 0.885 3.115 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.275 1.275 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.029 0.971 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.012 0.988 36 H 0.328 0.672 37 H 0.011 0.989 38 H 0.089 0.911 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.962 -4.317 3.398 8.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C -0.028 4.028 4 H 0.123 0.877 5 C -0.195 4.195 6 N -0.258 5.258 7 C -0.058 4.058 8 C -0.154 4.154 9 C -0.061 4.061 10 N -0.332 5.332 11 C -0.051 4.051 12 C 0.103 3.897 13 H 0.049 0.951 14 C -0.543 4.543 15 H 0.079 0.921 16 C -0.141 4.141 17 N -0.524 5.524 18 Si 0.714 3.286 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.200 1.200 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.030 0.970 36 H 0.145 0.855 37 H 0.030 0.970 38 H 0.107 0.893 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.155 -4.407 3.114 8.185 hybrid contribution -0.653 0.820 -0.353 1.106 sum 5.502 -3.587 2.761 7.125 Atomic orbital electron populations 1.21991 0.95224 0.99923 1.03607 1.22197 0.97030 0.98868 1.00248 1.21838 0.93757 0.92027 0.95199 0.87727 1.21833 0.96989 1.01321 0.99391 1.59450 1.29912 1.35706 1.00693 1.21602 0.99092 0.94079 0.91001 1.21408 0.95935 1.01327 0.96721 1.22126 0.91696 0.98227 0.94044 1.59231 1.06980 1.54437 1.12538 1.21949 0.99550 0.94076 0.89487 1.18467 0.84359 0.94538 0.92365 0.95051 1.21326 0.93640 1.31450 1.07868 0.92118 1.24929 0.96053 0.96474 0.96627 1.69958 0.99228 1.45294 1.37898 0.86704 0.77635 0.80455 0.83848 1.20871 1.21458 1.20006 0.91500 0.91053 0.95238 0.93435 0.93057 0.93803 0.92492 0.94146 0.94153 0.92913 0.92906 0.91370 0.92837 0.96976 0.85483 0.97050 0.89320 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.28 37.16 0.31 -2.70 16 2 C -0.14 -2.61 4.93 -26.73 -0.13 -2.74 16 3 C 0.08 1.57 2.13 -67.71 -0.14 1.43 16 4 H 0.10 2.33 5.27 -51.93 -0.27 2.06 16 5 C -0.14 -2.29 9.23 37.16 0.34 -1.95 16 6 N -0.53 -11.29 3.75 -224.91 -0.84 -12.14 16 7 C 0.07 1.31 3.61 -4.37 -0.02 1.29 16 8 C -0.12 -2.00 5.36 -27.47 -0.15 -2.15 16 9 C 0.07 1.19 6.49 -2.82 -0.02 1.17 16 10 N -0.70 -14.36 6.12 -113.49 -0.69 -15.05 16 11 C 0.08 1.86 5.38 -4.44 -0.02 1.83 16 12 C 0.21 5.09 0.99 -71.79 -0.07 5.02 16 13 H 0.03 0.84 4.16 -51.93 -0.22 0.63 16 14 C -0.50 -13.21 6.88 -34.44 -0.24 -13.45 16 15 H 0.06 1.62 6.50 -52.49 -0.34 1.28 16 16 C 0.06 1.62 5.16 -17.82 -0.09 1.53 16 17 N -0.88 -24.44 11.66 55.43 0.65 -23.79 16 18 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H 0.07 1.48 5.13 -51.93 -0.27 1.21 16 23 H 0.07 1.61 7.39 -51.93 -0.38 1.23 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.89 6.08 -51.93 -0.32 0.57 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.04 0.62 7.00 -51.93 -0.36 0.26 16 30 H 0.04 0.82 6.30 -51.92 -0.33 0.49 16 31 H 0.05 0.90 5.84 -51.93 -0.30 0.60 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.29 7.23 -51.93 -0.38 0.92 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.33 6.30 8.89 -39.30 -0.35 5.95 16 37 H 0.01 0.27 6.93 -51.93 -0.36 -0.09 16 38 H 0.09 2.33 6.14 -51.93 -0.32 2.01 16 39 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 279.00 15.07 4.20 4.20 Total: -1.00 -26.71 279.00 -8.23 -34.93 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.29 Total: 6.65 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -0.23 Total: -10.72 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.89 Total: -50.98 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -26.71 -8.23 -34.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251953043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.510 kcal (2) G-P(sol) polarization free energy of solvation -26.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds