Wall clock time and date at job start Mon Mar 30 2020 03:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46828 * 2 1 4 4 H 1.09000 * 109.47084 * 305.40529 * 3 2 1 5 5 C 1.53000 * 109.47126 * 185.40581 * 3 2 1 6 6 N 1.46898 * 109.46967 * 65.40309 * 3 2 1 7 7 C 1.47904 * 111.00116 * 43.92375 * 6 3 2 8 8 C 1.50801 * 108.49793 * 153.76250 * 7 6 3 9 9 C 1.53697 * 112.09930 * 92.55537 * 8 7 6 10 10 N 1.48066 * 112.46757 * 318.55904 * 9 8 7 11 11 C 1.44578 * 113.85803 * 318.31943 * 10 9 8 12 12 C 1.40009 * 111.00342 * 275.94066 * 6 3 2 13 13 H 1.08997 * 108.96138 * 67.51720 * 12 6 3 14 14 C 1.50698 * 108.96228 * 308.77110 * 12 6 3 15 15 H 1.07998 * 119.99751 * 353.74486 * 14 12 6 16 16 C 1.37874 * 120.00363 * 174.02899 * 14 12 6 17 17 N 1.31518 * 119.99994 * 359.72260 * 16 14 12 18 18 Si 1.86793 * 120.00406 * 179.72047 * 16 14 12 19 19 H 1.48504 * 109.47198 * 89.99601 * 18 16 14 20 20 H 1.48499 * 109.47554 * 209.99967 * 18 16 14 21 21 H 1.48508 * 109.47181 * 330.00073 * 18 16 14 22 22 H 1.09001 * 109.46749 * 282.69874 * 1 2 3 23 23 H 1.08991 * 109.47682 * 42.70464 * 1 2 3 24 24 H 1.09006 * 109.46983 * 162.70559 * 1 2 3 25 25 H 1.09003 * 109.47116 * 240.00373 * 2 1 3 26 26 H 1.08992 * 109.47078 * 120.00151 * 2 1 3 27 27 H 1.08997 * 109.47109 * 67.33731 * 5 3 2 28 28 H 1.08996 * 109.46992 * 187.34572 * 5 3 2 29 29 H 1.09003 * 109.46655 * 307.34240 * 5 3 2 30 30 H 1.09008 * 109.62871 * 273.46334 * 7 6 3 31 31 H 1.09005 * 109.63433 * 33.85147 * 7 6 3 32 32 H 1.09001 * 108.95511 * 213.23579 * 8 7 6 33 33 H 1.09005 * 108.95165 * 331.87808 * 8 7 6 34 34 H 1.08999 * 108.87865 * 79.32995 * 9 8 7 35 35 H 1.08999 * 108.87741 * 197.78587 * 9 8 7 36 36 H 1.00892 * 110.99812 * 192.19401 * 10 9 8 37 37 H 1.08994 * 109.57511 * 334.40519 * 11 10 9 38 38 H 1.09001 * 109.56974 * 214.03912 * 11 10 9 39 39 H 0.96995 * 120.00586 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5997 1.9835 -0.8376 5 6 3.5639 1.4448 -0.1359 6 7 1.6596 2.0963 1.2593 7 6 1.9009 1.2039 2.4138 8 6 2.1285 2.0554 3.6374 9 6 0.8277 2.3076 4.4164 10 7 -0.3202 2.5896 3.5248 11 6 0.0000 3.4622 2.4174 12 6 0.3550 2.5996 1.1894 13 1 -0.3438 1.7652 1.1303 14 6 0.2202 3.4395 -0.0545 15 1 1.0883 3.6475 -0.6623 16 6 -1.0103 3.9473 -0.4135 17 7 -2.0676 3.6942 0.3267 18 14 -1.1760 4.9949 -1.9511 19 1 -1.4739 4.1221 -3.1151 20 1 -2.2804 5.9708 -1.7687 21 1 0.0947 5.7248 -2.1922 22 1 -0.3633 0.2259 1.0026 23 1 -0.3634 0.7551 -0.6969 24 1 -0.3633 -0.9813 -0.3055 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.8410 1.0793 -1.1247 28 1 3.9388 2.4599 -0.0054 29 1 3.9975 0.7966 0.6257 30 1 1.0326 0.5636 2.5695 31 1 2.7802 0.5884 2.2235 32 1 2.8410 1.5525 4.2913 33 1 2.5481 3.0131 3.3292 34 1 0.6000 1.4270 5.0170 35 1 0.9747 3.1580 5.0822 36 1 -1.1064 2.9437 4.0486 37 1 0.8512 4.0897 2.6812 38 1 -0.8607 4.0897 2.1863 39 1 -2.9333 4.0511 0.0740 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251953043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:17 Heat of formation + Delta-G solvation = -0.477321 kcal Electronic energy + Delta-G solvation = -17621.511593 eV Core-core repulsion = 15177.640350 eV Total energy + Delta-G solvation = -2443.871243 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.69029 -37.05046 -35.09914 -33.03197 -32.42147 -30.95657 -28.12766 -26.96078 -25.17972 -24.22820 -21.90562 -20.95553 -20.04605 -18.31048 -17.69513 -16.47678 -16.34026 -15.73831 -15.51602 -15.21466 -14.49372 -14.38449 -14.25248 -13.85712 -13.29696 -13.03257 -12.90846 -12.69316 -12.65360 -12.51590 -12.30369 -12.19021 -11.78628 -11.72959 -11.60345 -11.44922 -11.29076 -11.05581 -10.62801 -10.37475 -8.93648 -8.38409 -7.98284 -6.07081 1.41194 1.43854 1.52209 2.47314 3.24765 3.55757 3.64993 4.11050 4.16334 4.30954 4.37481 4.46128 4.57144 4.74775 4.80640 4.84398 4.93341 4.96342 4.98887 5.09260 5.10701 5.16108 5.18780 5.22170 5.31523 5.40184 5.48339 5.59282 5.64054 5.75619 5.82270 6.06820 6.36404 6.59324 6.71445 6.82711 7.16620 7.28363 7.64836 9.04760 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022577 B = 0.012749 C = 0.009901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.921203 B = 2195.655007 C = 2827.454492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.075 3.925 4 H 0.070 0.930 5 C -0.127 4.127 6 N -0.544 5.544 7 C 0.073 3.927 8 C -0.114 4.114 9 C 0.066 3.934 10 N -0.710 5.710 11 C 0.093 3.907 12 C 0.223 3.777 13 H 0.008 0.992 14 C -0.510 4.510 15 H 0.051 0.949 16 C 0.017 3.983 17 N -0.910 5.910 18 Si 0.940 3.060 19 H -0.280 1.280 20 H -0.288 1.288 21 H -0.273 1.273 22 H 0.041 0.959 23 H 0.034 0.966 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.024 0.976 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.024 0.976 36 H 0.334 0.666 37 H 0.001 0.999 38 H 0.056 0.944 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.651 -5.465 3.816 10.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 C -0.033 4.033 4 H 0.089 0.911 5 C -0.185 4.185 6 N -0.268 5.268 7 C -0.054 4.054 8 C -0.152 4.152 9 C -0.062 4.062 10 N -0.341 5.341 11 C -0.037 4.037 12 C 0.113 3.887 13 H 0.025 0.975 14 C -0.549 4.549 15 H 0.069 0.931 16 C -0.182 4.182 17 N -0.550 5.550 18 Si 0.768 3.232 19 H -0.206 1.206 20 H -0.214 1.214 21 H -0.198 1.198 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.043 0.957 36 H 0.151 0.849 37 H 0.019 0.981 38 H 0.074 0.926 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.862 -5.562 3.537 10.260 hybrid contribution -1.166 1.138 -0.459 1.693 sum 6.696 -4.424 3.078 8.596 Atomic orbital electron populations 1.21816 0.96974 0.99778 1.01009 1.22122 0.95206 0.98139 1.02008 1.21843 0.95789 0.92371 0.93343 0.91147 1.21724 0.94253 1.01286 1.01221 1.59447 1.27944 1.37059 1.02307 1.21651 0.99265 0.93898 0.90569 1.21430 0.96497 1.00522 0.96773 1.22251 0.90642 0.99596 0.93717 1.59166 1.08645 1.53422 1.12885 1.21587 0.97532 0.93861 0.90723 1.18198 0.85414 0.93435 0.91621 0.97524 1.21573 0.93276 1.31335 1.08689 0.93087 1.25534 0.95941 0.97652 0.99030 1.70076 0.99394 1.46341 1.39182 0.85832 0.77421 0.79018 0.80976 1.20612 1.21390 1.19765 0.93998 0.94656 0.93054 0.91179 0.91510 0.91829 0.93533 0.92335 0.95721 0.90594 0.89204 0.93190 0.90665 0.95724 0.84871 0.98110 0.92598 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.53 8.28 71.98 0.60 -4.94 16 2 C -0.14 -4.65 4.93 30.60 0.15 -4.49 16 3 C 0.07 2.86 2.13 44.92 0.10 2.96 16 4 H 0.07 3.18 5.27 -2.39 -0.01 3.17 16 5 C -0.13 -3.90 9.23 71.98 0.66 -3.24 16 6 N -0.54 -22.75 3.75 -865.49 -3.25 -26.00 16 7 C 0.07 2.59 3.61 85.40 0.31 2.90 16 8 C -0.11 -3.66 5.36 30.11 0.16 -3.50 16 9 C 0.07 2.17 6.49 86.31 0.56 2.73 16 10 N -0.71 -28.98 6.12 -512.98 -3.14 -32.12 16 11 C 0.09 4.50 5.38 87.15 0.47 4.97 16 12 C 0.22 10.96 0.99 45.82 0.05 11.00 16 13 H 0.01 0.41 4.16 -2.39 -0.01 0.40 16 14 C -0.51 -27.50 6.88 25.60 0.18 -27.32 16 15 H 0.05 2.79 6.50 -2.91 -0.02 2.78 16 16 C 0.02 0.94 5.16 84.65 0.44 1.38 16 17 N -0.91 -51.90 11.66 21.45 0.25 -51.65 16 18 Si 0.94 43.90 29.54 68.60 2.03 45.92 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 22 H 0.04 1.87 5.13 -2.39 -0.01 1.86 16 23 H 0.03 1.63 7.39 -2.39 -0.02 1.61 16 24 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 25 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.07 2.10 6.08 -2.39 -0.01 2.08 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.58 7.00 -2.39 -0.02 1.56 16 30 H 0.02 0.96 6.30 -2.38 -0.02 0.94 16 31 H 0.08 2.32 5.84 -2.38 -0.01 2.31 16 32 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.05 1.80 7.23 -2.38 -0.02 1.78 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 35 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.33 12.84 8.89 -89.70 -0.80 12.05 16 37 H 0.00 0.03 6.93 -2.39 -0.02 0.01 16 38 H 0.06 3.05 6.14 -2.39 -0.01 3.03 16 39 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -58.80 279.00 -0.21 -59.01 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.24 Total: 22.38 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 3.66 Total: -17.55 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -6.14 Total: -109.77 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -58.80 -0.21 -59.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251953043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.530 kcal (2) G-P(sol) polarization free energy of solvation -58.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds