Wall clock time and date at job start Mon Mar 30 2020 03:08:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.53000 * 109.47097 * 2 1
4 4 H 1.08998 * 109.47286 * 302.51433 * 3 2 1
5 5 C 1.50701 * 109.47260 * 182.51665 * 3 2 1
6 6 H 1.08005 * 120.00254 * 240.00261 * 5 3 2
7 7 C 1.37876 * 119.99726 * 59.99631 * 5 3 2
8 8 N 1.31516 * 120.00376 * 0.02562 * 7 5 3
9 9 Si 1.86805 * 119.99764 * 180.02562 * 7 5 3
10 10 H 1.48498 * 109.47056 * 60.00527 * 9 7 5
11 11 H 1.48503 * 109.46938 * 180.02562 * 9 7 5
12 12 H 1.48500 * 109.47179 * 300.00138 * 9 7 5
13 13 N 1.46896 * 109.47086 * 62.51552 * 3 2 1
14 14 C 1.46851 * 111.00078 * 42.75300 * 13 3 2
15 15 C 1.53034 * 109.52500 * 174.16166 * 14 13 3
16 16 C 1.53122 * 109.28015 * 59.17344 * 15 14 13
17 17 H 1.08992 * 109.52288 * 62.31539 * 16 15 14
18 18 N 1.46905 * 109.52085 * 182.44330 * 16 15 14
19 19 C 1.53125 * 109.16084 * 302.34680 * 16 15 14
20 20 C 1.46838 * 111.00452 * 278.53661 * 13 3 2
21 21 H 1.09004 * 109.46035 * 65.82169 * 20 13 3
22 22 C 1.53003 * 109.46504 * 305.84926 * 20 13 3
23 23 H 1.08999 * 109.47605 * 41.42873 * 1 2 3
24 24 H 1.09002 * 109.47503 * 161.43469 * 1 2 3
25 25 H 1.09006 * 109.47406 * 281.42800 * 1 2 3
26 26 H 1.08996 * 109.47260 * 239.99919 * 2 1 3
27 27 H 1.09002 * 109.47324 * 119.99783 * 2 1 3
28 28 H 0.97000 * 120.00134 * 179.97438 * 8 7 5
29 29 H 1.09001 * 109.46365 * 54.13893 * 14 13 3
30 30 H 1.09007 * 109.44661 * 294.16606 * 14 13 3
31 31 H 1.09003 * 109.50253 * 299.23580 * 15 14 13
32 32 H 1.08993 * 109.50616 * 179.11665 * 15 14 13
33 33 H 1.00899 * 111.00068 * 299.99813 * 18 16 15
34 34 H 1.00900 * 110.99777 * 63.95725 * 18 16 15
35 35 H 1.08991 * 109.50007 * 177.59588 * 19 16 15
36 36 H 1.08997 * 109.50199 * 297.71162 * 19 16 15
37 37 H 1.09007 * 109.46870 * 69.24076 * 22 20 13
38 38 H 1.09001 * 109.47539 * 189.24161 * 22 20 13
39 39 H 1.09000 * 109.46658 * 309.24690 * 22 20 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6403 1.9692 -0.8666
5 6 3.5456 1.4430 -0.0624
6 1 4.1189 1.8989 0.7314
7 6 4.1914 0.8613 -1.1327
8 7 3.4934 0.3065 -2.0995
9 14 6.0579 0.8613 -1.2097
10 1 6.6020 0.1433 -0.0292
11 1 6.5020 0.1798 -2.4521
12 1 6.5533 2.2612 -1.2094
13 7 1.6005 2.1172 1.2286
14 6 1.7591 1.2405 2.3960
15 6 1.4310 2.0215 3.6705
16 6 -0.0076 2.5398 3.5896
17 1 -0.6958 1.6966 3.5326
18 7 -0.3091 3.3397 4.7844
19 6 -0.1585 3.4107 2.3392
20 6 0.2158 2.5894 1.1034
21 1 -0.4537 1.7332 1.0199
22 6 0.0857 3.4619 -0.1467
23 1 -0.3634 0.7705 -0.6800
24 1 -0.3634 -0.9742 -0.3272
25 1 -0.3634 0.2036 1.0073
26 1 1.8933 -0.5138 -0.8899
27 1 1.8933 -0.5138 0.8900
28 1 3.9477 -0.1024 -2.8527
29 1 2.7875 0.8822 2.4441
30 1 1.0823 0.3908 2.3064
31 1 2.1162 2.8636 3.7679
32 1 1.5336 1.3663 4.5354
33 1 -0.2112 2.7877 5.6233
34 1 0.2719 4.1637 4.8238
35 1 -1.1913 3.7478 2.2531
36 1 0.5017 4.2746 2.4157
37 1 0.1900 2.8402 -1.0361
38 1 -0.8918 3.9442 -0.1532
39 1 0.8663 4.2226 -0.1416
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000252683823.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:08:56
Heat of formation + Delta-G solvation = 1.010469 kcal
Electronic energy + Delta-G solvation = -17254.214859 eV
Core-core repulsion = 14810.408132 eV
Total energy + Delta-G solvation = -2443.806727 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-39.27488 -35.69906 -32.97646 -31.72090 -31.00976 -28.95397 -26.69938 -26.18836
-23.17701 -22.51927 -20.62812 -19.71873 -18.70383 -16.28830 -15.72178 -15.34253
-14.66328 -14.46295 -14.11398 -13.56573 -13.44643 -12.75439 -12.59249 -12.28903
-11.76954 -11.50581 -11.34141 -11.19491 -11.12658 -10.88861 -10.79106 -10.52303
-10.46577 -10.32670 -10.16899 -9.91095 -9.62737 -9.35776 -8.85383 -8.46508
-8.26647 -6.93994 -5.97037 -3.99566 3.33850 3.38234 3.41363 4.43784
4.70067 4.93181 5.22549 5.30059 5.33154 5.55454 5.67680 5.88335
6.00023 6.03584 6.04837 6.15347 6.17230 6.24554 6.31307 6.43262
6.44291 6.54444 6.62190 6.70754 6.77451 6.82461 6.97224 7.06228
7.26005 7.31614 7.54153 7.57611 7.76503 7.90999 8.27932 8.47125
8.68129 9.07118 9.64889 11.09464
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.032596 B = 0.008734 C = 0.008013
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 858.799690 B = 3205.063290 C = 3493.533216
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.152 4.152
3 C 0.212 3.788
4 H 0.048 0.952
5 C -0.494 4.494
6 H 0.059 0.941
7 C 0.057 3.943
8 N -0.896 5.896
9 Si 0.894 3.106
10 H -0.279 1.279
11 H -0.289 1.289
12 H -0.278 1.278
13 N -0.523 5.523
14 C 0.066 3.934
15 C -0.149 4.149
16 C 0.089 3.911
17 H 0.071 0.929
18 N -0.848 5.848
19 C -0.099 4.099
20 C 0.061 3.939
21 H 0.053 0.947
22 C -0.142 4.142
23 H 0.048 0.952
24 H 0.031 0.969
25 H 0.041 0.959
26 H 0.096 0.904
27 H 0.038 0.962
28 H 0.260 0.740
29 H 0.075 0.925
30 H 0.028 0.972
31 H 0.064 0.936
32 H 0.052 0.948
33 H 0.335 0.665
34 H 0.337 0.663
35 H 0.060 0.940
36 H 0.063 0.937
37 H 0.061 0.939
38 H 0.044 0.956
39 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.215 2.728 8.107 10.573
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.192 4.192
3 C 0.105 3.895
4 H 0.066 0.934
5 C -0.533 4.533
6 H 0.077 0.923
7 C -0.144 4.144
8 N -0.536 5.536
9 Si 0.722 3.278
10 H -0.205 1.205
11 H -0.215 1.215
12 H -0.204 1.204
13 N -0.248 5.248
14 C -0.063 4.063
15 C -0.189 4.189
16 C -0.022 4.022
17 H 0.089 0.911
18 N -0.375 5.375
19 C -0.138 4.138
20 C -0.048 4.048
21 H 0.070 0.930
22 C -0.199 4.199
23 H 0.067 0.933
24 H 0.051 0.949
25 H 0.060 0.940
26 H 0.114 0.886
27 H 0.056 0.944
28 H 0.069 0.931
29 H 0.094 0.906
30 H 0.046 0.954
31 H 0.083 0.917
32 H 0.070 0.930
33 H 0.146 0.854
34 H 0.149 0.851
35 H 0.079 0.921
36 H 0.081 0.919
37 H 0.080 0.920
38 H 0.063 0.937
39 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -6.633 3.136 7.684 10.624
hybrid contribution 1.586 -1.047 0.067 1.901
sum -5.047 2.089 7.750 9.482
Atomic orbital electron populations
1.22200 0.99708 0.99679 0.99426 1.22253 0.91425 1.02560 1.02952
1.19458 0.94962 0.88347 0.86685 0.93390 1.21123 0.90953 1.35332
1.05884 0.92252 1.24917 0.98098 0.95624 0.95715 1.69862 1.34957
1.38651 1.10091 0.86629 0.85930 0.78128 0.77079 1.20506 1.21476
1.20358 1.62267 1.18049 1.39788 1.04664 1.21872 1.01245 0.93605
0.89624 1.22460 0.97679 1.00549 0.98215 1.21516 0.94703 0.95584
0.90386 0.91066 1.59008 1.62653 1.11007 1.04808 1.21623 1.00585
0.98344 0.93231 1.21935 0.91886 0.97045 0.93933 0.92954 1.21870
1.00263 1.00067 0.97735 0.93344 0.94945 0.94045 0.88568 0.94365
0.93051 0.90619 0.95400 0.91729 0.92973 0.85354 0.85058 0.92115
0.91856 0.91985 0.93703 0.92058
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.00 8.08 37.15 0.30 -2.70 16
2 C -0.15 -3.54 4.69 -26.73 -0.13 -3.66 16
3 C 0.21 5.11 1.73 -68.87 -0.12 4.99 16
4 H 0.05 1.26 5.36 -51.93 -0.28 0.99 16
5 C -0.49 -13.37 8.13 -34.44 -0.28 -13.65 16
6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16
7 C 0.06 1.56 5.30 -17.82 -0.09 1.46 16
8 N -0.90 -25.20 11.30 55.43 0.63 -24.57 16
9 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16
10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
13 N -0.52 -10.81 4.35 -220.15 -0.96 -11.77 16
14 C 0.07 1.25 4.12 -3.83 -0.02 1.23 16
15 C -0.15 -2.30 5.67 -26.65 -0.15 -2.45 16
16 C 0.09 1.28 3.32 -67.58 -0.22 1.06 16
17 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16
18 N -0.85 -10.28 9.26 -4.56 -0.04 -10.32 16
19 C -0.10 -1.54 4.90 -26.65 -0.13 -1.67 16
20 C 0.06 1.09 1.76 -67.73 -0.12 0.97 16
21 H 0.05 0.96 4.02 -51.93 -0.21 0.75 16
22 C -0.14 -2.50 8.40 37.16 0.31 -2.19 16
23 H 0.05 0.94 6.45 -51.93 -0.34 0.61 16
24 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16
25 H 0.04 0.76 4.94 -51.93 -0.26 0.50 16
26 H 0.10 2.53 6.01 -51.93 -0.31 2.22 16
27 H 0.04 0.88 6.31 -51.93 -0.33 0.56 16
28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16
29 H 0.08 1.59 7.57 -51.93 -0.39 1.19 16
30 H 0.03 0.53 5.25 -51.93 -0.27 0.26 16
31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
33 H 0.33 3.50 9.04 -39.29 -0.36 3.15 16
34 H 0.34 3.83 8.98 -39.29 -0.35 3.48 16
35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
37 H 0.06 1.19 5.68 -51.92 -0.29 0.89 16
38 H 0.04 0.67 8.12 -51.93 -0.42 0.24 16
39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16
LS Contribution 282.70 15.07 4.26 4.26
Total: -1.00 -27.26 282.70 -8.09 -35.35
By element:
Atomic # 1 Polarization: 13.63 SS G_CDS: -6.31 Total: 7.31 kcal
Atomic # 6 Polarization: -15.96 SS G_CDS: -0.65 Total: -16.61 kcal
Atomic # 7 Polarization: -46.29 SS G_CDS: -0.37 Total: -46.66 kcal
Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal
Total LS contribution 4.26 Total: 4.26 kcal
Total: -27.26 -8.09 -35.35 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000252683823.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.359 kcal
(2) G-P(sol) polarization free energy of solvation -27.255 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.104 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.348 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.010 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds