Wall clock time and date at job start Mon Mar 30 2020 03:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47097 * 2 1 4 4 H 1.08998 * 109.47286 * 302.51433 * 3 2 1 5 5 C 1.50701 * 109.47260 * 182.51665 * 3 2 1 6 6 H 1.08005 * 120.00254 * 240.00261 * 5 3 2 7 7 C 1.37876 * 119.99726 * 59.99631 * 5 3 2 8 8 N 1.31516 * 120.00376 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99764 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47056 * 60.00527 * 9 7 5 11 11 H 1.48503 * 109.46938 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47179 * 300.00138 * 9 7 5 13 13 N 1.46896 * 109.47086 * 62.51552 * 3 2 1 14 14 C 1.46851 * 111.00078 * 42.75300 * 13 3 2 15 15 C 1.53034 * 109.52500 * 174.16166 * 14 13 3 16 16 C 1.53122 * 109.28015 * 59.17344 * 15 14 13 17 17 H 1.08992 * 109.52288 * 62.31539 * 16 15 14 18 18 N 1.46905 * 109.52085 * 182.44330 * 16 15 14 19 19 C 1.53125 * 109.16084 * 302.34680 * 16 15 14 20 20 C 1.46838 * 111.00452 * 278.53661 * 13 3 2 21 21 H 1.09004 * 109.46035 * 65.82169 * 20 13 3 22 22 C 1.53003 * 109.46504 * 305.84926 * 20 13 3 23 23 H 1.08999 * 109.47605 * 41.42873 * 1 2 3 24 24 H 1.09002 * 109.47503 * 161.43469 * 1 2 3 25 25 H 1.09006 * 109.47406 * 281.42800 * 1 2 3 26 26 H 1.08996 * 109.47260 * 239.99919 * 2 1 3 27 27 H 1.09002 * 109.47324 * 119.99783 * 2 1 3 28 28 H 0.97000 * 120.00134 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46365 * 54.13893 * 14 13 3 30 30 H 1.09007 * 109.44661 * 294.16606 * 14 13 3 31 31 H 1.09003 * 109.50253 * 299.23580 * 15 14 13 32 32 H 1.08993 * 109.50616 * 179.11665 * 15 14 13 33 33 H 1.00899 * 111.00068 * 299.99813 * 18 16 15 34 34 H 1.00900 * 110.99777 * 63.95725 * 18 16 15 35 35 H 1.08991 * 109.50007 * 177.59588 * 19 16 15 36 36 H 1.08997 * 109.50199 * 297.71162 * 19 16 15 37 37 H 1.09007 * 109.46870 * 69.24076 * 22 20 13 38 38 H 1.09001 * 109.47539 * 189.24161 * 22 20 13 39 39 H 1.09000 * 109.46658 * 309.24690 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6403 1.9692 -0.8666 5 6 3.5456 1.4430 -0.0624 6 1 4.1189 1.8989 0.7314 7 6 4.1914 0.8613 -1.1327 8 7 3.4934 0.3065 -2.0995 9 14 6.0579 0.8613 -1.2097 10 1 6.6020 0.1433 -0.0292 11 1 6.5020 0.1798 -2.4521 12 1 6.5533 2.2612 -1.2094 13 7 1.6005 2.1172 1.2286 14 6 1.7591 1.2405 2.3960 15 6 1.4310 2.0215 3.6705 16 6 -0.0076 2.5398 3.5896 17 1 -0.6958 1.6966 3.5326 18 7 -0.3091 3.3397 4.7844 19 6 -0.1585 3.4107 2.3392 20 6 0.2158 2.5894 1.1034 21 1 -0.4537 1.7332 1.0199 22 6 0.0857 3.4619 -0.1467 23 1 -0.3634 0.7705 -0.6800 24 1 -0.3634 -0.9742 -0.3272 25 1 -0.3634 0.2036 1.0073 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9477 -0.1024 -2.8527 29 1 2.7875 0.8822 2.4441 30 1 1.0823 0.3908 2.3064 31 1 2.1162 2.8636 3.7679 32 1 1.5336 1.3663 4.5354 33 1 -0.2112 2.7877 5.6233 34 1 0.2719 4.1637 4.8238 35 1 -1.1913 3.7478 2.2531 36 1 0.5017 4.2746 2.4157 37 1 0.1900 2.8402 -1.0361 38 1 -0.8918 3.9442 -0.1532 39 1 0.8663 4.2226 -0.1416 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252683823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:56 Heat of formation + Delta-G solvation = 1.010469 kcal Electronic energy + Delta-G solvation = -17254.214859 eV Core-core repulsion = 14810.408132 eV Total energy + Delta-G solvation = -2443.806727 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.27488 -35.69906 -32.97646 -31.72090 -31.00976 -28.95397 -26.69938 -26.18836 -23.17701 -22.51927 -20.62812 -19.71873 -18.70383 -16.28830 -15.72178 -15.34253 -14.66328 -14.46295 -14.11398 -13.56573 -13.44643 -12.75439 -12.59249 -12.28903 -11.76954 -11.50581 -11.34141 -11.19491 -11.12658 -10.88861 -10.79106 -10.52303 -10.46577 -10.32670 -10.16899 -9.91095 -9.62737 -9.35776 -8.85383 -8.46508 -8.26647 -6.93994 -5.97037 -3.99566 3.33850 3.38234 3.41363 4.43784 4.70067 4.93181 5.22549 5.30059 5.33154 5.55454 5.67680 5.88335 6.00023 6.03584 6.04837 6.15347 6.17230 6.24554 6.31307 6.43262 6.44291 6.54444 6.62190 6.70754 6.77451 6.82461 6.97224 7.06228 7.26005 7.31614 7.54153 7.57611 7.76503 7.90999 8.27932 8.47125 8.68129 9.07118 9.64889 11.09464 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032596 B = 0.008734 C = 0.008013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.799690 B = 3205.063290 C = 3493.533216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.152 4.152 3 C 0.212 3.788 4 H 0.048 0.952 5 C -0.494 4.494 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.523 5.523 14 C 0.066 3.934 15 C -0.149 4.149 16 C 0.089 3.911 17 H 0.071 0.929 18 N -0.848 5.848 19 C -0.099 4.099 20 C 0.061 3.939 21 H 0.053 0.947 22 C -0.142 4.142 23 H 0.048 0.952 24 H 0.031 0.969 25 H 0.041 0.959 26 H 0.096 0.904 27 H 0.038 0.962 28 H 0.260 0.740 29 H 0.075 0.925 30 H 0.028 0.972 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.335 0.665 34 H 0.337 0.663 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.215 2.728 8.107 10.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.192 4.192 3 C 0.105 3.895 4 H 0.066 0.934 5 C -0.533 4.533 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.248 5.248 14 C -0.063 4.063 15 C -0.189 4.189 16 C -0.022 4.022 17 H 0.089 0.911 18 N -0.375 5.375 19 C -0.138 4.138 20 C -0.048 4.048 21 H 0.070 0.930 22 C -0.199 4.199 23 H 0.067 0.933 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.114 0.886 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.633 3.136 7.684 10.624 hybrid contribution 1.586 -1.047 0.067 1.901 sum -5.047 2.089 7.750 9.482 Atomic orbital electron populations 1.22200 0.99708 0.99679 0.99426 1.22253 0.91425 1.02560 1.02952 1.19458 0.94962 0.88347 0.86685 0.93390 1.21123 0.90953 1.35332 1.05884 0.92252 1.24917 0.98098 0.95624 0.95715 1.69862 1.34957 1.38651 1.10091 0.86629 0.85930 0.78128 0.77079 1.20506 1.21476 1.20358 1.62267 1.18049 1.39788 1.04664 1.21872 1.01245 0.93605 0.89624 1.22460 0.97679 1.00549 0.98215 1.21516 0.94703 0.95584 0.90386 0.91066 1.59008 1.62653 1.11007 1.04808 1.21623 1.00585 0.98344 0.93231 1.21935 0.91886 0.97045 0.93933 0.92954 1.21870 1.00263 1.00067 0.97735 0.93344 0.94945 0.94045 0.88568 0.94365 0.93051 0.90619 0.95400 0.91729 0.92973 0.85354 0.85058 0.92115 0.91856 0.91985 0.93703 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.08 37.15 0.30 -2.70 16 2 C -0.15 -3.54 4.69 -26.73 -0.13 -3.66 16 3 C 0.21 5.11 1.73 -68.87 -0.12 4.99 16 4 H 0.05 1.26 5.36 -51.93 -0.28 0.99 16 5 C -0.49 -13.37 8.13 -34.44 -0.28 -13.65 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.56 5.30 -17.82 -0.09 1.46 16 8 N -0.90 -25.20 11.30 55.43 0.63 -24.57 16 9 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.52 -10.81 4.35 -220.15 -0.96 -11.77 16 14 C 0.07 1.25 4.12 -3.83 -0.02 1.23 16 15 C -0.15 -2.30 5.67 -26.65 -0.15 -2.45 16 16 C 0.09 1.28 3.32 -67.58 -0.22 1.06 16 17 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 18 N -0.85 -10.28 9.26 -4.56 -0.04 -10.32 16 19 C -0.10 -1.54 4.90 -26.65 -0.13 -1.67 16 20 C 0.06 1.09 1.76 -67.73 -0.12 0.97 16 21 H 0.05 0.96 4.02 -51.93 -0.21 0.75 16 22 C -0.14 -2.50 8.40 37.16 0.31 -2.19 16 23 H 0.05 0.94 6.45 -51.93 -0.34 0.61 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.04 0.76 4.94 -51.93 -0.26 0.50 16 26 H 0.10 2.53 6.01 -51.93 -0.31 2.22 16 27 H 0.04 0.88 6.31 -51.93 -0.33 0.56 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.08 1.59 7.57 -51.93 -0.39 1.19 16 30 H 0.03 0.53 5.25 -51.93 -0.27 0.26 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.33 3.50 9.04 -39.29 -0.36 3.15 16 34 H 0.34 3.83 8.98 -39.29 -0.35 3.48 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.19 5.68 -51.92 -0.29 0.89 16 38 H 0.04 0.67 8.12 -51.93 -0.42 0.24 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 282.70 15.07 4.26 4.26 Total: -1.00 -27.26 282.70 -8.09 -35.35 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.31 Total: 7.31 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -0.65 Total: -16.61 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.37 Total: -46.66 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.26 -8.09 -35.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252683823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.359 kcal (2) G-P(sol) polarization free energy of solvation -27.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds