Wall clock time and date at job start Mon Mar 30 2020 03:08:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.53000 * 109.47097 * 2 1
4 4 H 1.08998 * 109.47286 * 302.51433 * 3 2 1
5 5 C 1.50701 * 109.47260 * 182.51665 * 3 2 1
6 6 H 1.08005 * 120.00254 * 240.00261 * 5 3 2
7 7 C 1.37876 * 119.99726 * 59.99631 * 5 3 2
8 8 N 1.31516 * 120.00376 * 0.02562 * 7 5 3
9 9 Si 1.86805 * 119.99764 * 180.02562 * 7 5 3
10 10 H 1.48498 * 109.47056 * 60.00527 * 9 7 5
11 11 H 1.48503 * 109.46938 * 180.02562 * 9 7 5
12 12 H 1.48500 * 109.47179 * 300.00138 * 9 7 5
13 13 N 1.46896 * 109.47086 * 62.51552 * 3 2 1
14 14 C 1.46851 * 111.00078 * 42.75300 * 13 3 2
15 15 C 1.53034 * 109.52500 * 174.16166 * 14 13 3
16 16 C 1.53122 * 109.28015 * 59.17344 * 15 14 13
17 17 H 1.08992 * 109.52288 * 62.31539 * 16 15 14
18 18 N 1.46905 * 109.52085 * 182.44330 * 16 15 14
19 19 C 1.53125 * 109.16084 * 302.34680 * 16 15 14
20 20 C 1.46838 * 111.00452 * 278.53661 * 13 3 2
21 21 H 1.09004 * 109.46035 * 65.82169 * 20 13 3
22 22 C 1.53003 * 109.46504 * 305.84926 * 20 13 3
23 23 H 1.08999 * 109.47605 * 41.42873 * 1 2 3
24 24 H 1.09002 * 109.47503 * 161.43469 * 1 2 3
25 25 H 1.09006 * 109.47406 * 281.42800 * 1 2 3
26 26 H 1.08996 * 109.47260 * 239.99919 * 2 1 3
27 27 H 1.09002 * 109.47324 * 119.99783 * 2 1 3
28 28 H 0.97000 * 120.00134 * 179.97438 * 8 7 5
29 29 H 1.09001 * 109.46365 * 54.13893 * 14 13 3
30 30 H 1.09007 * 109.44661 * 294.16606 * 14 13 3
31 31 H 1.09003 * 109.50253 * 299.23580 * 15 14 13
32 32 H 1.08993 * 109.50616 * 179.11665 * 15 14 13
33 33 H 1.00899 * 111.00068 * 299.99813 * 18 16 15
34 34 H 1.00900 * 110.99777 * 63.95725 * 18 16 15
35 35 H 1.08991 * 109.50007 * 177.59588 * 19 16 15
36 36 H 1.08997 * 109.50199 * 297.71162 * 19 16 15
37 37 H 1.09007 * 109.46870 * 69.24076 * 22 20 13
38 38 H 1.09001 * 109.47539 * 189.24161 * 22 20 13
39 39 H 1.09000 * 109.46658 * 309.24690 * 22 20 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6403 1.9692 -0.8666
5 6 3.5456 1.4430 -0.0624
6 1 4.1189 1.8989 0.7314
7 6 4.1914 0.8613 -1.1327
8 7 3.4934 0.3065 -2.0995
9 14 6.0579 0.8613 -1.2097
10 1 6.6020 0.1433 -0.0292
11 1 6.5020 0.1798 -2.4521
12 1 6.5533 2.2612 -1.2094
13 7 1.6005 2.1172 1.2286
14 6 1.7591 1.2405 2.3960
15 6 1.4310 2.0215 3.6705
16 6 -0.0076 2.5398 3.5896
17 1 -0.6958 1.6966 3.5326
18 7 -0.3091 3.3397 4.7844
19 6 -0.1585 3.4107 2.3392
20 6 0.2158 2.5894 1.1034
21 1 -0.4537 1.7332 1.0199
22 6 0.0857 3.4619 -0.1467
23 1 -0.3634 0.7705 -0.6800
24 1 -0.3634 -0.9742 -0.3272
25 1 -0.3634 0.2036 1.0073
26 1 1.8933 -0.5138 -0.8899
27 1 1.8933 -0.5138 0.8900
28 1 3.9477 -0.1024 -2.8527
29 1 2.7875 0.8822 2.4441
30 1 1.0823 0.3908 2.3064
31 1 2.1162 2.8636 3.7679
32 1 1.5336 1.3663 4.5354
33 1 -0.2112 2.7877 5.6233
34 1 0.2719 4.1637 4.8238
35 1 -1.1913 3.7478 2.2531
36 1 0.5017 4.2746 2.4157
37 1 0.1900 2.8402 -1.0361
38 1 -0.8918 3.9442 -0.1532
39 1 0.8663 4.2226 -0.1416
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000252683823.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:08:56
Heat of formation + Delta-G solvation = -17.939461 kcal
Electronic energy + Delta-G solvation = -17255.036590 eV
Core-core repulsion = 14810.408132 eV
Total energy + Delta-G solvation = -2444.628458 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.78205 -37.13227 -34.72886 -33.33561 -32.58312 -30.44800 -28.29455 -27.75473
-25.00653 -24.01202 -22.03068 -21.25589 -20.28293 -18.28924 -17.11820 -16.78451
-16.31562 -16.00259 -15.65740 -15.09835 -14.79829 -14.26288 -14.16615 -13.80230
-13.42107 -13.13746 -12.88266 -12.78457 -12.73703 -12.60024 -12.51020 -12.18471
-12.10337 -11.87767 -11.71105 -11.52149 -11.23586 -11.03257 -10.78875 -10.31224
-9.52372 -8.59298 -8.06157 -6.15373 1.41266 1.42125 1.49699 2.43999
3.21158 3.40753 3.64766 3.95381 4.03714 4.26813 4.30851 4.38867
4.50191 4.55768 4.63726 4.69119 4.73394 4.79128 4.89772 5.01962
5.10766 5.11145 5.13666 5.20405 5.26116 5.33327 5.33986 5.47647
5.59561 5.67152 5.83124 5.89405 6.27204 6.36418 6.63589 6.68956
6.90476 6.99776 7.53221 8.98292
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.032596 B = 0.008734 C = 0.008013
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 858.799690 B = 3205.063290 C = 3493.533216
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.145 4.145
3 C 0.217 3.783
4 H 0.023 0.977
5 C -0.511 4.511
6 H 0.047 0.953
7 C 0.012 3.988
8 N -0.919 5.919
9 Si 0.951 3.049
10 H -0.275 1.275
11 H -0.285 1.285
12 H -0.276 1.276
13 N -0.533 5.533
14 C 0.067 3.933
15 C -0.139 4.139
16 C 0.098 3.902
17 H 0.072 0.928
18 N -0.842 5.842
19 C -0.092 4.092
20 C 0.059 3.941
21 H 0.055 0.945
22 C -0.137 4.137
23 H 0.046 0.954
24 H 0.045 0.955
25 H 0.059 0.941
26 H 0.062 0.938
27 H 0.032 0.968
28 H 0.259 0.741
29 H 0.047 0.953
30 H 0.027 0.973
31 H 0.058 0.942
32 H 0.073 0.927
33 H 0.348 0.652
34 H 0.344 0.656
35 H 0.076 0.924
36 H 0.057 0.943
37 H 0.038 0.962
38 H 0.075 0.925
39 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.159 3.202 9.683 12.460
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.184 4.184
3 C 0.110 3.890
4 H 0.041 0.959
5 C -0.549 4.549
6 H 0.065 0.935
7 C -0.186 4.186
8 N -0.559 5.559
9 Si 0.778 3.222
10 H -0.200 1.200
11 H -0.210 1.210
12 H -0.201 1.201
13 N -0.257 5.257
14 C -0.062 4.062
15 C -0.179 4.179
16 C -0.014 4.014
17 H 0.090 0.910
18 N -0.371 5.371
19 C -0.130 4.130
20 C -0.049 4.049
21 H 0.072 0.928
22 C -0.195 4.195
23 H 0.065 0.935
24 H 0.064 0.936
25 H 0.077 0.923
26 H 0.081 0.919
27 H 0.051 0.949
28 H 0.068 0.932
29 H 0.065 0.935
30 H 0.046 0.954
31 H 0.077 0.923
32 H 0.091 0.909
33 H 0.161 0.839
34 H 0.157 0.843
35 H 0.095 0.905
36 H 0.076 0.924
37 H 0.057 0.943
38 H 0.094 0.906
39 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -7.584 3.619 9.286 12.524
hybrid contribution 1.869 -1.173 -0.408 2.244
sum -5.715 2.445 8.879 10.839
Atomic orbital electron populations
1.22052 0.96736 1.00466 1.00527 1.22058 0.94051 1.01431 1.00885
1.19182 0.93419 0.88818 0.87547 0.95919 1.21420 0.92814 1.35147
1.05562 0.93491 1.25606 1.02065 0.95440 0.95509 1.69992 1.36312
1.39199 1.10428 0.85721 0.81241 0.78100 0.77168 1.20031 1.21021
1.20104 1.62181 1.20216 1.39624 1.03721 1.21847 0.99608 0.94035
0.90723 1.22399 0.98502 1.00193 0.96771 1.21351 0.93616 0.95543
0.90851 0.90979 1.58950 1.62542 1.11051 1.04540 1.21542 1.01251
0.97785 0.92462 1.22028 0.90098 0.97421 0.95399 0.92793 1.21821
1.01507 0.99367 0.96757 0.93520 0.93610 0.92270 0.91948 0.94944
0.93172 0.93453 0.95445 0.92345 0.90855 0.83922 0.84343 0.90504
0.92378 0.94289 0.90585 0.93480
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.41 8.08 71.98 0.58 -4.83 16
2 C -0.14 -6.83 4.69 30.59 0.14 -6.69 16
3 C 0.22 10.76 1.73 44.17 0.08 10.84 16
4 H 0.02 1.25 5.36 -2.39 -0.01 1.24 16
5 C -0.51 -28.38 8.13 25.60 0.21 -28.17 16
6 H 0.05 2.66 7.81 -2.91 -0.02 2.63 16
7 C 0.01 0.66 5.30 84.65 0.45 1.11 16
8 N -0.92 -52.99 11.30 21.45 0.24 -52.75 16
9 Si 0.95 44.45 29.54 68.60 2.03 46.48 16
10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16
11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16
12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16
13 N -0.53 -22.02 4.35 -850.41 -3.70 -25.72 16
14 C 0.07 2.50 4.12 86.32 0.36 2.86 16
15 C -0.14 -3.98 5.67 30.65 0.17 -3.80 16
16 C 0.10 2.52 3.32 45.00 0.15 2.67 16
17 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16
18 N -0.84 -17.44 9.26 -168.33 -1.56 -19.00 16
19 C -0.09 -2.61 4.90 30.65 0.15 -2.46 16
20 C 0.06 2.04 1.76 44.94 0.08 2.12 16
21 H 0.05 1.86 4.02 -2.38 -0.01 1.85 16
22 C -0.14 -4.74 8.40 71.98 0.60 -4.13 16
23 H 0.05 1.79 6.45 -2.39 -0.02 1.78 16
24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16
25 H 0.06 2.05 4.94 -2.38 -0.01 2.04 16
26 H 0.06 3.38 6.01 -2.39 -0.01 3.37 16
27 H 0.03 1.52 6.31 -2.39 -0.02 1.51 16
28 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16
29 H 0.05 2.01 7.57 -2.39 -0.02 1.99 16
30 H 0.03 1.02 5.25 -2.38 -0.01 1.01 16
31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16
32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16
33 H 0.35 5.96 9.04 -89.69 -0.81 5.14 16
34 H 0.34 6.65 8.98 -89.69 -0.81 5.84 16
35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16
36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16
37 H 0.04 1.51 5.68 -2.38 -0.01 1.49 16
38 H 0.08 2.11 8.12 -2.39 -0.02 2.09 16
39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16
Total: -1.00 -59.12 282.70 -0.58 -59.71
By element:
Atomic # 1 Polarization: 22.34 SS G_CDS: -0.57 Total: 21.77 kcal
Atomic # 6 Polarization: -33.46 SS G_CDS: 2.97 Total: -30.49 kcal
Atomic # 7 Polarization: -92.45 SS G_CDS: -5.01 Total: -97.46 kcal
Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal
Total: -59.12 -0.58 -59.71 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000252683823.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.766 kcal
(2) G-P(sol) polarization free energy of solvation -59.124 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.357 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.582 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.706 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.939 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds