Wall clock time and date at job start Mon Mar 30 2020 03:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47097 * 2 1 4 4 H 1.08998 * 109.47286 * 302.51433 * 3 2 1 5 5 C 1.50701 * 109.47260 * 182.51665 * 3 2 1 6 6 H 1.08005 * 120.00254 * 240.00261 * 5 3 2 7 7 C 1.37876 * 119.99726 * 59.99631 * 5 3 2 8 8 N 1.31516 * 120.00376 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99764 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47056 * 60.00527 * 9 7 5 11 11 H 1.48503 * 109.46938 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47179 * 300.00138 * 9 7 5 13 13 N 1.46896 * 109.47086 * 62.51552 * 3 2 1 14 14 C 1.46851 * 111.00078 * 42.75300 * 13 3 2 15 15 C 1.53034 * 109.52500 * 174.16166 * 14 13 3 16 16 C 1.53122 * 109.28015 * 59.17344 * 15 14 13 17 17 H 1.08992 * 109.52288 * 62.31539 * 16 15 14 18 18 N 1.46905 * 109.52085 * 182.44330 * 16 15 14 19 19 C 1.53125 * 109.16084 * 302.34680 * 16 15 14 20 20 C 1.46838 * 111.00452 * 278.53661 * 13 3 2 21 21 H 1.09004 * 109.46035 * 65.82169 * 20 13 3 22 22 C 1.53003 * 109.46504 * 305.84926 * 20 13 3 23 23 H 1.08999 * 109.47605 * 41.42873 * 1 2 3 24 24 H 1.09002 * 109.47503 * 161.43469 * 1 2 3 25 25 H 1.09006 * 109.47406 * 281.42800 * 1 2 3 26 26 H 1.08996 * 109.47260 * 239.99919 * 2 1 3 27 27 H 1.09002 * 109.47324 * 119.99783 * 2 1 3 28 28 H 0.97000 * 120.00134 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46365 * 54.13893 * 14 13 3 30 30 H 1.09007 * 109.44661 * 294.16606 * 14 13 3 31 31 H 1.09003 * 109.50253 * 299.23580 * 15 14 13 32 32 H 1.08993 * 109.50616 * 179.11665 * 15 14 13 33 33 H 1.00899 * 111.00068 * 299.99813 * 18 16 15 34 34 H 1.00900 * 110.99777 * 63.95725 * 18 16 15 35 35 H 1.08991 * 109.50007 * 177.59588 * 19 16 15 36 36 H 1.08997 * 109.50199 * 297.71162 * 19 16 15 37 37 H 1.09007 * 109.46870 * 69.24076 * 22 20 13 38 38 H 1.09001 * 109.47539 * 189.24161 * 22 20 13 39 39 H 1.09000 * 109.46658 * 309.24690 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6403 1.9692 -0.8666 5 6 3.5456 1.4430 -0.0624 6 1 4.1189 1.8989 0.7314 7 6 4.1914 0.8613 -1.1327 8 7 3.4934 0.3065 -2.0995 9 14 6.0579 0.8613 -1.2097 10 1 6.6020 0.1433 -0.0292 11 1 6.5020 0.1798 -2.4521 12 1 6.5533 2.2612 -1.2094 13 7 1.6005 2.1172 1.2286 14 6 1.7591 1.2405 2.3960 15 6 1.4310 2.0215 3.6705 16 6 -0.0076 2.5398 3.5896 17 1 -0.6958 1.6966 3.5326 18 7 -0.3091 3.3397 4.7844 19 6 -0.1585 3.4107 2.3392 20 6 0.2158 2.5894 1.1034 21 1 -0.4537 1.7332 1.0199 22 6 0.0857 3.4619 -0.1467 23 1 -0.3634 0.7705 -0.6800 24 1 -0.3634 -0.9742 -0.3272 25 1 -0.3634 0.2036 1.0073 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9477 -0.1024 -2.8527 29 1 2.7875 0.8822 2.4441 30 1 1.0823 0.3908 2.3064 31 1 2.1162 2.8636 3.7679 32 1 1.5336 1.3663 4.5354 33 1 -0.2112 2.7877 5.6233 34 1 0.2719 4.1637 4.8238 35 1 -1.1913 3.7478 2.2531 36 1 0.5017 4.2746 2.4157 37 1 0.1900 2.8402 -1.0361 38 1 -0.8918 3.9442 -0.1532 39 1 0.8663 4.2226 -0.1416 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252683823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:56 Heat of formation + Delta-G solvation = -17.939461 kcal Electronic energy + Delta-G solvation = -17255.036590 eV Core-core repulsion = 14810.408132 eV Total energy + Delta-G solvation = -2444.628458 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.78205 -37.13227 -34.72886 -33.33561 -32.58312 -30.44800 -28.29455 -27.75473 -25.00653 -24.01202 -22.03068 -21.25589 -20.28293 -18.28924 -17.11820 -16.78451 -16.31562 -16.00259 -15.65740 -15.09835 -14.79829 -14.26288 -14.16615 -13.80230 -13.42107 -13.13746 -12.88266 -12.78457 -12.73703 -12.60024 -12.51020 -12.18471 -12.10337 -11.87767 -11.71105 -11.52149 -11.23586 -11.03257 -10.78875 -10.31224 -9.52372 -8.59298 -8.06157 -6.15373 1.41266 1.42125 1.49699 2.43999 3.21158 3.40753 3.64766 3.95381 4.03714 4.26813 4.30851 4.38867 4.50191 4.55768 4.63726 4.69119 4.73394 4.79128 4.89772 5.01962 5.10766 5.11145 5.13666 5.20405 5.26116 5.33327 5.33986 5.47647 5.59561 5.67152 5.83124 5.89405 6.27204 6.36418 6.63589 6.68956 6.90476 6.99776 7.53221 8.98292 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032596 B = 0.008734 C = 0.008013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.799690 B = 3205.063290 C = 3493.533216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.145 4.145 3 C 0.217 3.783 4 H 0.023 0.977 5 C -0.511 4.511 6 H 0.047 0.953 7 C 0.012 3.988 8 N -0.919 5.919 9 Si 0.951 3.049 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.533 5.533 14 C 0.067 3.933 15 C -0.139 4.139 16 C 0.098 3.902 17 H 0.072 0.928 18 N -0.842 5.842 19 C -0.092 4.092 20 C 0.059 3.941 21 H 0.055 0.945 22 C -0.137 4.137 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.032 0.968 28 H 0.259 0.741 29 H 0.047 0.953 30 H 0.027 0.973 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.348 0.652 34 H 0.344 0.656 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.038 0.962 38 H 0.075 0.925 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.159 3.202 9.683 12.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.184 4.184 3 C 0.110 3.890 4 H 0.041 0.959 5 C -0.549 4.549 6 H 0.065 0.935 7 C -0.186 4.186 8 N -0.559 5.559 9 Si 0.778 3.222 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.257 5.257 14 C -0.062 4.062 15 C -0.179 4.179 16 C -0.014 4.014 17 H 0.090 0.910 18 N -0.371 5.371 19 C -0.130 4.130 20 C -0.049 4.049 21 H 0.072 0.928 22 C -0.195 4.195 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.161 0.839 34 H 0.157 0.843 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.584 3.619 9.286 12.524 hybrid contribution 1.869 -1.173 -0.408 2.244 sum -5.715 2.445 8.879 10.839 Atomic orbital electron populations 1.22052 0.96736 1.00466 1.00527 1.22058 0.94051 1.01431 1.00885 1.19182 0.93419 0.88818 0.87547 0.95919 1.21420 0.92814 1.35147 1.05562 0.93491 1.25606 1.02065 0.95440 0.95509 1.69992 1.36312 1.39199 1.10428 0.85721 0.81241 0.78100 0.77168 1.20031 1.21021 1.20104 1.62181 1.20216 1.39624 1.03721 1.21847 0.99608 0.94035 0.90723 1.22399 0.98502 1.00193 0.96771 1.21351 0.93616 0.95543 0.90851 0.90979 1.58950 1.62542 1.11051 1.04540 1.21542 1.01251 0.97785 0.92462 1.22028 0.90098 0.97421 0.95399 0.92793 1.21821 1.01507 0.99367 0.96757 0.93520 0.93610 0.92270 0.91948 0.94944 0.93172 0.93453 0.95445 0.92345 0.90855 0.83922 0.84343 0.90504 0.92378 0.94289 0.90585 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 8.08 71.98 0.58 -4.83 16 2 C -0.14 -6.83 4.69 30.59 0.14 -6.69 16 3 C 0.22 10.76 1.73 44.17 0.08 10.84 16 4 H 0.02 1.25 5.36 -2.39 -0.01 1.24 16 5 C -0.51 -28.38 8.13 25.60 0.21 -28.17 16 6 H 0.05 2.66 7.81 -2.91 -0.02 2.63 16 7 C 0.01 0.66 5.30 84.65 0.45 1.11 16 8 N -0.92 -52.99 11.30 21.45 0.24 -52.75 16 9 Si 0.95 44.45 29.54 68.60 2.03 46.48 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 N -0.53 -22.02 4.35 -850.41 -3.70 -25.72 16 14 C 0.07 2.50 4.12 86.32 0.36 2.86 16 15 C -0.14 -3.98 5.67 30.65 0.17 -3.80 16 16 C 0.10 2.52 3.32 45.00 0.15 2.67 16 17 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 18 N -0.84 -17.44 9.26 -168.33 -1.56 -19.00 16 19 C -0.09 -2.61 4.90 30.65 0.15 -2.46 16 20 C 0.06 2.04 1.76 44.94 0.08 2.12 16 21 H 0.05 1.86 4.02 -2.38 -0.01 1.85 16 22 C -0.14 -4.74 8.40 71.98 0.60 -4.13 16 23 H 0.05 1.79 6.45 -2.39 -0.02 1.78 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.06 2.05 4.94 -2.38 -0.01 2.04 16 26 H 0.06 3.38 6.01 -2.39 -0.01 3.37 16 27 H 0.03 1.52 6.31 -2.39 -0.02 1.51 16 28 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.05 2.01 7.57 -2.39 -0.02 1.99 16 30 H 0.03 1.02 5.25 -2.38 -0.01 1.01 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.35 5.96 9.04 -89.69 -0.81 5.14 16 34 H 0.34 6.65 8.98 -89.69 -0.81 5.84 16 35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.04 1.51 5.68 -2.38 -0.01 1.49 16 38 H 0.08 2.11 8.12 -2.39 -0.02 2.09 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -59.12 282.70 -0.58 -59.71 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -0.57 Total: 21.77 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: 2.97 Total: -30.49 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -5.01 Total: -97.46 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -59.12 -0.58 -59.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252683823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.766 kcal (2) G-P(sol) polarization free energy of solvation -59.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds