Wall clock time and date at job start Mon Mar 30 2020 03:08:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52995 * 109.47325 * 2 1
4 4 H 1.09003 * 109.47161 * 305.00590 * 3 2 1
5 5 C 1.50693 * 109.47321 * 185.00240 * 3 2 1
6 6 H 1.08003 * 120.00079 * 240.00270 * 5 3 2
7 7 C 1.37880 * 120.00056 * 59.99753 * 5 3 2
8 8 N 1.31507 * 119.99805 * 0.02562 * 7 5 3
9 9 Si 1.86797 * 119.99863 * 179.97438 * 7 5 3
10 10 H 1.48502 * 109.46807 * 90.00639 * 9 7 5
11 11 H 1.48507 * 109.46991 * 210.00108 * 9 7 5
12 12 H 1.48498 * 109.47691 * 330.00656 * 9 7 5
13 13 N 1.46906 * 109.46837 * 65.00286 * 3 2 1
14 14 C 1.47436 * 110.99898 * 69.87309 * 13 3 2
15 15 C 1.54324 * 107.23089 * 123.25894 * 14 13 3
16 16 C 1.55140 * 103.01888 * 22.28261 * 15 14 13
17 17 H 1.08998 * 110.99225 * 82.48047 * 16 15 14
18 18 C 1.52999 * 110.98904 * 206.25665 * 16 15 14
19 19 H 1.09002 * 109.47343 * 58.54538 * 18 16 15
20 20 C 1.53003 * 109.47314 * 298.54366 * 18 16 15
21 21 N 1.46899 * 109.47347 * 178.54658 * 18 16 15
22 22 C 1.47851 * 110.99786 * 190.71864 * 13 3 2
23 23 H 1.08998 * 109.47170 * 59.99761 * 1 2 3
24 24 H 1.08998 * 109.47309 * 180.02562 * 1 2 3
25 25 H 1.09002 * 109.47095 * 299.99727 * 1 2 3
26 26 H 1.09001 * 109.46699 * 239.99907 * 2 1 3
27 27 H 1.08998 * 109.47170 * 120.00239 * 2 1 3
28 28 H 0.97001 * 119.99893 * 180.02562 * 8 7 5
29 29 H 1.08998 * 109.88931 * 242.66034 * 14 13 3
30 30 H 1.08996 * 109.89509 * 3.69403 * 14 13 3
31 31 H 1.08995 * 110.70829 * 140.66528 * 15 14 13
32 32 H 1.08998 * 110.70384 * 263.72400 * 15 14 13
33 33 H 1.09008 * 109.46618 * 60.00029 * 20 18 16
34 34 H 1.08997 * 109.47482 * 179.97438 * 20 18 16
35 35 H 1.08999 * 109.47420 * 300.00720 * 20 18 16
36 36 H 1.00897 * 110.99850 * 59.99548 * 21 18 16
37 37 H 1.00895 * 111.00495 * 183.95364 * 21 18 16
38 38 H 1.08997 * 110.37354 * 332.46432 * 22 13 3
39 39 H 1.08994 * 110.37029 * 94.80655 * 22 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6054 1.9815 -0.8418
5 6 3.5419 1.4442 -0.1239
6 1 4.1472 1.8888 0.6523
7 6 4.1432 0.8783 -1.2280
8 7 3.4061 0.3374 -2.1733
9 14 6.0049 0.8812 -1.3819
10 1 6.5548 -0.3503 -0.7604
11 1 6.3828 0.9223 -2.8175
12 1 6.5570 2.0737 -0.6903
13 7 1.6515 2.0992 1.2553
14 6 2.4043 1.5461 2.3960
15 6 3.1300 2.7243 3.0792
16 6 2.2966 3.9543 2.6327
17 1 1.4151 4.0778 3.2618
18 6 3.1498 5.2243 2.6345
19 1 4.0009 5.0912 1.9665
20 6 3.6529 5.4988 4.0531
21 7 2.3391 6.3596 2.1743
22 6 1.8983 3.5554 1.1899
23 1 -0.3633 0.5139 -0.8899
24 1 -0.3634 -1.0276 0.0005
25 1 -0.3633 0.5138 0.8900
26 1 1.8933 -0.5139 -0.8900
27 1 1.8934 -0.5139 0.8899
28 1 3.8292 -0.0611 -2.9499
29 1 1.7181 1.0751 3.0998
30 1 3.1311 0.8153 2.0414
31 1 3.1058 2.6154 4.1634
32 1 4.1576 2.8021 2.7239
33 1 4.2546 4.6564 4.3946
34 1 4.2612 6.4033 4.0543
35 1 2.8019 5.6318 4.7211
36 1 1.5433 6.5036 2.7776
37 1 2.8967 7.1976 2.1050
38 1 2.7123 3.7716 0.4980
39 1 0.9924 4.0806 0.8874
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000252774552.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:08:43
Heat of formation + Delta-G solvation = -12.538681 kcal
Electronic energy + Delta-G solvation = -16873.472989 eV
Core-core repulsion = 14429.078726 eV
Total energy + Delta-G solvation = -2444.394263 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-38.76085 -35.95550 -33.41920 -31.49673 -29.68425 -28.10387 -27.91311 -26.01780
-22.99243 -21.83039 -20.84168 -19.64719 -18.55203 -16.49215 -15.84309 -15.24610
-14.66669 -14.20767 -13.93910 -13.32107 -13.00717 -12.80727 -12.57758 -12.49726
-12.11655 -11.77448 -11.35222 -11.21000 -11.00242 -10.81068 -10.58621 -10.49405
-10.26553 -10.18917 -9.98466 -9.87930 -9.54042 -9.35691 -8.92530 -8.51609
-8.30533 -7.01543 -5.93206 -4.05235 3.28461 3.35986 3.38072 4.43024
4.64821 4.92567 5.20418 5.30269 5.38596 5.45185 5.53860 5.64968
5.78210 6.04247 6.06306 6.08009 6.33509 6.38044 6.43072 6.47608
6.56050 6.75812 6.84154 6.87929 6.97083 7.07136 7.19433 7.26147
7.31404 7.47101 7.58410 7.70313 7.82394 8.09380 8.24377 8.42425
8.56418 9.06087 9.60875 11.06134
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.022493 B = 0.009845 C = 0.007863
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1244.543917 B = 2843.520335 C = 3560.185070
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.108 4.108
3 C 0.208 3.792
4 H 0.035 0.965
5 C -0.537 4.537
6 H 0.057 0.943
7 C 0.066 3.934
8 N -0.885 5.885
9 Si 0.885 3.115
10 H -0.282 1.282
11 H -0.287 1.287
12 H -0.276 1.276
13 N -0.531 5.531
14 C 0.048 3.952
15 C -0.130 4.130
16 C -0.087 4.087
17 H 0.068 0.932
18 C 0.096 3.904
19 H 0.080 0.920
20 C -0.184 4.184
21 N -0.840 5.840
22 C 0.069 3.931
23 H 0.038 0.962
24 H 0.024 0.976
25 H 0.047 0.953
26 H 0.090 0.910
27 H 0.029 0.971
28 H 0.260 0.740
29 H 0.048 0.952
30 H 0.072 0.928
31 H 0.055 0.945
32 H 0.063 0.937
33 H 0.062 0.938
34 H 0.047 0.953
35 H 0.051 0.949
36 H 0.335 0.665
37 H 0.335 0.665
38 H 0.054 0.946
39 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.014 6.975 9.543 11.864
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.147 4.147
3 C 0.101 3.899
4 H 0.053 0.947
5 C -0.576 4.576
6 H 0.076 0.924
7 C -0.136 4.136
8 N -0.524 5.524
9 Si 0.713 3.287
10 H -0.208 1.208
11 H -0.212 1.212
12 H -0.201 1.201
13 N -0.255 5.255
14 C -0.080 4.080
15 C -0.169 4.169
16 C -0.106 4.106
17 H 0.087 0.913
18 C -0.016 4.016
19 H 0.099 0.901
20 C -0.244 4.244
21 N -0.368 5.368
22 C -0.060 4.060
23 H 0.057 0.943
24 H 0.043 0.957
25 H 0.066 0.934
26 H 0.109 0.891
27 H 0.048 0.952
28 H 0.070 0.930
29 H 0.066 0.934
30 H 0.091 0.909
31 H 0.074 0.926
32 H 0.082 0.918
33 H 0.081 0.919
34 H 0.067 0.933
35 H 0.070 0.930
36 H 0.148 0.852
37 H 0.147 0.853
38 H 0.072 0.928
39 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -1.655 6.347 8.730 10.920
hybrid contribution 2.267 0.526 0.684 2.426
sum 0.613 6.873 9.414 11.672
Atomic orbital electron populations
1.21703 0.98979 0.98272 1.00536 1.21556 0.92196 0.99270 1.01662
1.19412 0.92956 0.91193 0.86336 0.94664 1.21791 0.92777 1.37668
1.05328 0.92444 1.24927 0.97611 0.95270 0.95776 1.69879 1.34641
1.38453 1.09432 0.86718 0.86516 0.78275 0.77219 1.20784 1.21249
1.20124 1.63886 1.53959 1.02434 1.05218 1.22648 0.95788 0.96623
0.92971 1.22787 0.99425 0.95646 0.99077 1.22252 0.97202 0.92607
0.98563 0.91316 1.21454 0.95738 0.90997 0.93433 0.90143 1.22643
1.01222 1.01569 0.98951 1.58824 1.12294 1.07820 1.57829 1.22714
0.99780 0.89234 0.94227 0.94319 0.95735 0.93375 0.89138 0.95176
0.92990 0.93353 0.90923 0.92634 0.91819 0.91911 0.93344 0.93015
0.85237 0.85302 0.92767 0.92076
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.91 9.80 37.16 0.36 -2.55 16
2 C -0.11 -2.63 5.21 -26.73 -0.14 -2.77 16
3 C 0.21 5.22 1.62 -68.87 -0.11 5.10 16
4 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16
5 C -0.54 -14.31 6.24 -34.44 -0.22 -14.53 16
6 H 0.06 1.53 6.22 -52.48 -0.33 1.20 16
7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16
8 N -0.89 -25.13 11.29 55.43 0.63 -24.51 16
9 Si 0.88 21.21 29.54 -169.99 -5.02 16.19 16
10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
13 N -0.53 -11.53 4.58 -224.68 -1.03 -12.56 16
14 C 0.05 0.96 5.33 -2.84 -0.02 0.94 16
15 C -0.13 -2.20 5.13 -24.91 -0.13 -2.32 16
16 C -0.09 -1.40 2.75 -88.48 -0.24 -1.64 16
17 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16
18 C 0.10 1.33 2.88 -67.71 -0.20 1.13 16
19 H 0.08 1.28 8.10 -51.93 -0.42 0.85 16
20 C -0.18 -2.11 9.28 37.16 0.34 -1.76 16
21 N -0.84 -10.46 9.05 -4.67 -0.04 -10.50 16
22 C 0.07 1.37 5.76 -2.30 -0.01 1.36 16
23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16
24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
25 H 0.05 0.98 7.75 -51.93 -0.40 0.58 16
26 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16
27 H 0.03 0.72 7.04 -51.93 -0.37 0.35 16
28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16
29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16
30 H 0.07 1.62 5.67 -51.93 -0.29 1.33 16
31 H 0.05 0.81 8.11 -51.93 -0.42 0.39 16
32 H 0.06 1.13 7.63 -51.93 -0.40 0.74 16
33 H 0.06 0.74 7.32 -51.92 -0.38 0.36 16
34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16
35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
36 H 0.34 3.69 9.00 -39.29 -0.35 3.34 16
37 H 0.33 3.53 9.07 -39.29 -0.36 3.17 16
38 H 0.05 1.23 6.96 -51.93 -0.36 0.87 16
39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16
LS Contribution 297.27 15.07 4.48 4.48
Total: -1.00 -27.66 297.27 -8.33 -35.99
By element:
Atomic # 1 Polarization: 13.13 SS G_CDS: -6.90 Total: 6.23 kcal
Atomic # 6 Polarization: -14.88 SS G_CDS: -0.45 Total: -15.32 kcal
Atomic # 7 Polarization: -47.13 SS G_CDS: -0.45 Total: -47.57 kcal
Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal
Total LS contribution 4.48 Total: 4.48 kcal
Total: -27.66 -8.33 -35.99 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000252774552.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.452 kcal
(2) G-P(sol) polarization free energy of solvation -27.658 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.206 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.990 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.539 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds