Wall clock time and date at job start Mon Mar 30 2020 03:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47325 * 2 1 4 4 H 1.09003 * 109.47161 * 305.00590 * 3 2 1 5 5 C 1.50693 * 109.47321 * 185.00240 * 3 2 1 6 6 H 1.08003 * 120.00079 * 240.00270 * 5 3 2 7 7 C 1.37880 * 120.00056 * 59.99753 * 5 3 2 8 8 N 1.31507 * 119.99805 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99863 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46807 * 90.00639 * 9 7 5 11 11 H 1.48507 * 109.46991 * 210.00108 * 9 7 5 12 12 H 1.48498 * 109.47691 * 330.00656 * 9 7 5 13 13 N 1.46906 * 109.46837 * 65.00286 * 3 2 1 14 14 C 1.47436 * 110.99898 * 69.87309 * 13 3 2 15 15 C 1.54324 * 107.23089 * 123.25894 * 14 13 3 16 16 C 1.55140 * 103.01888 * 22.28261 * 15 14 13 17 17 H 1.08998 * 110.99225 * 82.48047 * 16 15 14 18 18 C 1.52999 * 110.98904 * 206.25665 * 16 15 14 19 19 H 1.09002 * 109.47343 * 58.54538 * 18 16 15 20 20 C 1.53003 * 109.47314 * 298.54366 * 18 16 15 21 21 N 1.46899 * 109.47347 * 178.54658 * 18 16 15 22 22 C 1.47851 * 110.99786 * 190.71864 * 13 3 2 23 23 H 1.08998 * 109.47170 * 59.99761 * 1 2 3 24 24 H 1.08998 * 109.47309 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47095 * 299.99727 * 1 2 3 26 26 H 1.09001 * 109.46699 * 239.99907 * 2 1 3 27 27 H 1.08998 * 109.47170 * 120.00239 * 2 1 3 28 28 H 0.97001 * 119.99893 * 180.02562 * 8 7 5 29 29 H 1.08998 * 109.88931 * 242.66034 * 14 13 3 30 30 H 1.08996 * 109.89509 * 3.69403 * 14 13 3 31 31 H 1.08995 * 110.70829 * 140.66528 * 15 14 13 32 32 H 1.08998 * 110.70384 * 263.72400 * 15 14 13 33 33 H 1.09008 * 109.46618 * 60.00029 * 20 18 16 34 34 H 1.08997 * 109.47482 * 179.97438 * 20 18 16 35 35 H 1.08999 * 109.47420 * 300.00720 * 20 18 16 36 36 H 1.00897 * 110.99850 * 59.99548 * 21 18 16 37 37 H 1.00895 * 111.00495 * 183.95364 * 21 18 16 38 38 H 1.08997 * 110.37354 * 332.46432 * 22 13 3 39 39 H 1.08994 * 110.37029 * 94.80655 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8783 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8812 -1.3819 10 1 6.5548 -0.3503 -0.7604 11 1 6.3828 0.9223 -2.8175 12 1 6.5570 2.0737 -0.6903 13 7 1.6515 2.0992 1.2553 14 6 2.4043 1.5461 2.3960 15 6 3.1300 2.7243 3.0792 16 6 2.2966 3.9543 2.6327 17 1 1.4151 4.0778 3.2618 18 6 3.1498 5.2243 2.6345 19 1 4.0009 5.0912 1.9665 20 6 3.6529 5.4988 4.0531 21 7 2.3391 6.3596 2.1743 22 6 1.8983 3.5554 1.1899 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.8292 -0.0611 -2.9499 29 1 1.7181 1.0751 3.0998 30 1 3.1311 0.8153 2.0414 31 1 3.1058 2.6154 4.1634 32 1 4.1576 2.8021 2.7239 33 1 4.2546 4.6564 4.3946 34 1 4.2612 6.4033 4.0543 35 1 2.8019 5.6318 4.7211 36 1 1.5433 6.5036 2.7776 37 1 2.8967 7.1976 2.1050 38 1 2.7123 3.7716 0.4980 39 1 0.9924 4.0806 0.8874 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252774552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:43 Heat of formation + Delta-G solvation = -12.538681 kcal Electronic energy + Delta-G solvation = -16873.472989 eV Core-core repulsion = 14429.078726 eV Total energy + Delta-G solvation = -2444.394263 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.76085 -35.95550 -33.41920 -31.49673 -29.68425 -28.10387 -27.91311 -26.01780 -22.99243 -21.83039 -20.84168 -19.64719 -18.55203 -16.49215 -15.84309 -15.24610 -14.66669 -14.20767 -13.93910 -13.32107 -13.00717 -12.80727 -12.57758 -12.49726 -12.11655 -11.77448 -11.35222 -11.21000 -11.00242 -10.81068 -10.58621 -10.49405 -10.26553 -10.18917 -9.98466 -9.87930 -9.54042 -9.35691 -8.92530 -8.51609 -8.30533 -7.01543 -5.93206 -4.05235 3.28461 3.35986 3.38072 4.43024 4.64821 4.92567 5.20418 5.30269 5.38596 5.45185 5.53860 5.64968 5.78210 6.04247 6.06306 6.08009 6.33509 6.38044 6.43072 6.47608 6.56050 6.75812 6.84154 6.87929 6.97083 7.07136 7.19433 7.26147 7.31404 7.47101 7.58410 7.70313 7.82394 8.09380 8.24377 8.42425 8.56418 9.06087 9.60875 11.06134 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022493 B = 0.009845 C = 0.007863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.543917 B = 2843.520335 C = 3560.185070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 C 0.208 3.792 4 H 0.035 0.965 5 C -0.537 4.537 6 H 0.057 0.943 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.531 5.531 14 C 0.048 3.952 15 C -0.130 4.130 16 C -0.087 4.087 17 H 0.068 0.932 18 C 0.096 3.904 19 H 0.080 0.920 20 C -0.184 4.184 21 N -0.840 5.840 22 C 0.069 3.931 23 H 0.038 0.962 24 H 0.024 0.976 25 H 0.047 0.953 26 H 0.090 0.910 27 H 0.029 0.971 28 H 0.260 0.740 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.335 0.665 37 H 0.335 0.665 38 H 0.054 0.946 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.014 6.975 9.543 11.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C 0.101 3.899 4 H 0.053 0.947 5 C -0.576 4.576 6 H 0.076 0.924 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.255 5.255 14 C -0.080 4.080 15 C -0.169 4.169 16 C -0.106 4.106 17 H 0.087 0.913 18 C -0.016 4.016 19 H 0.099 0.901 20 C -0.244 4.244 21 N -0.368 5.368 22 C -0.060 4.060 23 H 0.057 0.943 24 H 0.043 0.957 25 H 0.066 0.934 26 H 0.109 0.891 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.072 0.928 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.655 6.347 8.730 10.920 hybrid contribution 2.267 0.526 0.684 2.426 sum 0.613 6.873 9.414 11.672 Atomic orbital electron populations 1.21703 0.98979 0.98272 1.00536 1.21556 0.92196 0.99270 1.01662 1.19412 0.92956 0.91193 0.86336 0.94664 1.21791 0.92777 1.37668 1.05328 0.92444 1.24927 0.97611 0.95270 0.95776 1.69879 1.34641 1.38453 1.09432 0.86718 0.86516 0.78275 0.77219 1.20784 1.21249 1.20124 1.63886 1.53959 1.02434 1.05218 1.22648 0.95788 0.96623 0.92971 1.22787 0.99425 0.95646 0.99077 1.22252 0.97202 0.92607 0.98563 0.91316 1.21454 0.95738 0.90997 0.93433 0.90143 1.22643 1.01222 1.01569 0.98951 1.58824 1.12294 1.07820 1.57829 1.22714 0.99780 0.89234 0.94227 0.94319 0.95735 0.93375 0.89138 0.95176 0.92990 0.93353 0.90923 0.92634 0.91819 0.91911 0.93344 0.93015 0.85237 0.85302 0.92767 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.80 37.16 0.36 -2.55 16 2 C -0.11 -2.63 5.21 -26.73 -0.14 -2.77 16 3 C 0.21 5.22 1.62 -68.87 -0.11 5.10 16 4 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 5 C -0.54 -14.31 6.24 -34.44 -0.22 -14.53 16 6 H 0.06 1.53 6.22 -52.48 -0.33 1.20 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.89 -25.13 11.29 55.43 0.63 -24.51 16 9 Si 0.88 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.53 -11.53 4.58 -224.68 -1.03 -12.56 16 14 C 0.05 0.96 5.33 -2.84 -0.02 0.94 16 15 C -0.13 -2.20 5.13 -24.91 -0.13 -2.32 16 16 C -0.09 -1.40 2.75 -88.48 -0.24 -1.64 16 17 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 18 C 0.10 1.33 2.88 -67.71 -0.20 1.13 16 19 H 0.08 1.28 8.10 -51.93 -0.42 0.85 16 20 C -0.18 -2.11 9.28 37.16 0.34 -1.76 16 21 N -0.84 -10.46 9.05 -4.67 -0.04 -10.50 16 22 C 0.07 1.37 5.76 -2.30 -0.01 1.36 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.98 7.75 -51.93 -0.40 0.58 16 26 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 27 H 0.03 0.72 7.04 -51.93 -0.37 0.35 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.62 5.67 -51.93 -0.29 1.33 16 31 H 0.05 0.81 8.11 -51.93 -0.42 0.39 16 32 H 0.06 1.13 7.63 -51.93 -0.40 0.74 16 33 H 0.06 0.74 7.32 -51.92 -0.38 0.36 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.34 3.69 9.00 -39.29 -0.35 3.34 16 37 H 0.33 3.53 9.07 -39.29 -0.36 3.17 16 38 H 0.05 1.23 6.96 -51.93 -0.36 0.87 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 297.27 15.07 4.48 4.48 Total: -1.00 -27.66 297.27 -8.33 -35.99 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.90 Total: 6.23 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -0.45 Total: -15.32 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.45 Total: -47.57 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.66 -8.33 -35.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252774552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.452 kcal (2) G-P(sol) polarization free energy of solvation -27.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds