Wall clock time and date at job start Mon Mar 30 2020 03:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47325 * 2 1 4 4 H 1.09003 * 109.47161 * 305.00590 * 3 2 1 5 5 C 1.50693 * 109.47321 * 185.00240 * 3 2 1 6 6 H 1.08003 * 120.00079 * 240.00270 * 5 3 2 7 7 C 1.37880 * 120.00056 * 59.99753 * 5 3 2 8 8 N 1.31507 * 119.99805 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99863 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46807 * 90.00639 * 9 7 5 11 11 H 1.48507 * 109.46991 * 210.00108 * 9 7 5 12 12 H 1.48498 * 109.47691 * 330.00656 * 9 7 5 13 13 N 1.46906 * 109.46837 * 65.00286 * 3 2 1 14 14 C 1.47436 * 110.99898 * 69.87309 * 13 3 2 15 15 C 1.54324 * 107.23089 * 123.25894 * 14 13 3 16 16 C 1.55140 * 103.01888 * 22.28261 * 15 14 13 17 17 H 1.08998 * 110.99225 * 82.48047 * 16 15 14 18 18 C 1.52999 * 110.98904 * 206.25665 * 16 15 14 19 19 H 1.09002 * 109.47343 * 58.54538 * 18 16 15 20 20 C 1.53003 * 109.47314 * 298.54366 * 18 16 15 21 21 N 1.46899 * 109.47347 * 178.54658 * 18 16 15 22 22 C 1.47851 * 110.99786 * 190.71864 * 13 3 2 23 23 H 1.08998 * 109.47170 * 59.99761 * 1 2 3 24 24 H 1.08998 * 109.47309 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47095 * 299.99727 * 1 2 3 26 26 H 1.09001 * 109.46699 * 239.99907 * 2 1 3 27 27 H 1.08998 * 109.47170 * 120.00239 * 2 1 3 28 28 H 0.97001 * 119.99893 * 180.02562 * 8 7 5 29 29 H 1.08998 * 109.88931 * 242.66034 * 14 13 3 30 30 H 1.08996 * 109.89509 * 3.69403 * 14 13 3 31 31 H 1.08995 * 110.70829 * 140.66528 * 15 14 13 32 32 H 1.08998 * 110.70384 * 263.72400 * 15 14 13 33 33 H 1.09008 * 109.46618 * 60.00029 * 20 18 16 34 34 H 1.08997 * 109.47482 * 179.97438 * 20 18 16 35 35 H 1.08999 * 109.47420 * 300.00720 * 20 18 16 36 36 H 1.00897 * 110.99850 * 59.99548 * 21 18 16 37 37 H 1.00895 * 111.00495 * 183.95364 * 21 18 16 38 38 H 1.08997 * 110.37354 * 332.46432 * 22 13 3 39 39 H 1.08994 * 110.37029 * 94.80655 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8783 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8812 -1.3819 10 1 6.5548 -0.3503 -0.7604 11 1 6.3828 0.9223 -2.8175 12 1 6.5570 2.0737 -0.6903 13 7 1.6515 2.0992 1.2553 14 6 2.4043 1.5461 2.3960 15 6 3.1300 2.7243 3.0792 16 6 2.2966 3.9543 2.6327 17 1 1.4151 4.0778 3.2618 18 6 3.1498 5.2243 2.6345 19 1 4.0009 5.0912 1.9665 20 6 3.6529 5.4988 4.0531 21 7 2.3391 6.3596 2.1743 22 6 1.8983 3.5554 1.1899 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.8292 -0.0611 -2.9499 29 1 1.7181 1.0751 3.0998 30 1 3.1311 0.8153 2.0414 31 1 3.1058 2.6154 4.1634 32 1 4.1576 2.8021 2.7239 33 1 4.2546 4.6564 4.3946 34 1 4.2612 6.4033 4.0543 35 1 2.8019 5.6318 4.7211 36 1 1.5433 6.5036 2.7776 37 1 2.8967 7.1976 2.1050 38 1 2.7123 3.7716 0.4980 39 1 0.9924 4.0806 0.8874 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252774552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:42 Heat of formation + Delta-G solvation = -31.579846 kcal Electronic energy + Delta-G solvation = -16874.298676 eV Core-core repulsion = 14429.078726 eV Total energy + Delta-G solvation = -2445.219949 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.31943 -37.38584 -35.12908 -33.45018 -31.17903 -29.49300 -29.26463 -27.88026 -24.86299 -23.14391 -22.56022 -21.07909 -20.30234 -18.47277 -17.26943 -16.78082 -16.32804 -15.80240 -15.26210 -14.89748 -14.51987 -14.31710 -14.13005 -13.90208 -13.63183 -13.18998 -13.18607 -12.96565 -12.60706 -12.50059 -12.33050 -12.07734 -11.92213 -11.73771 -11.59789 -11.47105 -11.38521 -11.17755 -10.88101 -10.41559 -9.49616 -8.86066 -8.00714 -6.21686 1.36206 1.37751 1.46333 2.40533 3.17158 3.50062 3.60223 3.94460 4.03448 4.19911 4.40414 4.46640 4.48850 4.60701 4.73375 4.75752 4.88549 4.92960 4.98007 5.03734 5.08659 5.15971 5.19968 5.26281 5.31256 5.35764 5.46211 5.56183 5.60000 5.67857 5.81275 6.10117 6.23045 6.35664 6.47026 6.68213 6.73785 7.00536 7.47603 8.94787 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022493 B = 0.009845 C = 0.007863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.543917 B = 2843.520335 C = 3560.185070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.216 3.784 4 H -0.006 1.006 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.945 3.055 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.533 5.533 14 C 0.045 3.955 15 C -0.122 4.122 16 C -0.073 4.073 17 H 0.085 0.915 18 C 0.101 3.899 19 H 0.055 0.945 20 C -0.175 4.175 21 N -0.850 5.850 22 C 0.070 3.930 23 H 0.030 0.970 24 H 0.046 0.954 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.029 0.971 28 H 0.260 0.740 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.347 0.653 37 H 0.347 0.653 38 H 0.019 0.981 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.852 7.779 11.675 14.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C 0.108 3.892 4 H 0.012 0.988 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.771 3.229 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.256 5.256 14 C -0.083 4.083 15 C -0.161 4.161 16 C -0.092 4.092 17 H 0.104 0.896 18 C -0.011 4.011 19 H 0.073 0.927 20 C -0.235 4.235 21 N -0.380 5.380 22 C -0.059 4.059 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.037 0.963 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.494 7.165 10.881 13.114 hybrid contribution 2.167 0.297 0.008 2.188 sum 0.674 7.462 10.889 13.218 Atomic orbital electron populations 1.21565 0.96436 0.99753 1.00535 1.21402 0.94442 0.98259 1.00095 1.19160 0.91945 0.91431 0.86660 0.98783 1.22008 0.93778 1.37058 1.05144 0.92792 1.25649 1.01738 0.95226 0.95650 1.70013 1.36185 1.39260 1.09858 0.85761 0.81607 0.78404 0.77110 1.20128 1.21083 1.19724 1.63837 1.54195 1.03258 1.04303 1.22684 0.95667 0.97293 0.92626 1.22719 0.98231 0.94382 1.00724 1.22183 0.98006 0.93486 0.95557 0.89644 1.21256 0.94565 0.90488 0.94797 0.92713 1.22532 1.01856 1.02141 0.96930 1.58733 1.12863 1.08053 1.58394 1.22671 0.98384 0.88361 0.96440 0.95094 0.93496 0.92485 0.92084 0.95197 0.93070 0.91602 0.93728 0.89278 0.93159 0.92118 0.91975 0.91563 0.83992 0.83924 0.96273 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.26 9.80 71.98 0.71 -4.56 16 2 C -0.10 -5.12 5.21 30.59 0.16 -4.96 16 3 C 0.22 11.16 1.62 44.16 0.07 11.23 16 4 H -0.01 -0.34 8.07 -2.39 -0.02 -0.36 16 5 C -0.54 -29.64 6.24 25.60 0.16 -29.48 16 6 H 0.05 2.94 6.22 -2.91 -0.02 2.92 16 7 C 0.02 0.93 5.29 84.66 0.45 1.38 16 8 N -0.91 -53.36 11.29 21.45 0.24 -53.12 16 9 Si 0.94 44.20 29.54 68.60 2.03 46.23 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 N -0.53 -23.21 4.58 -864.77 -3.96 -27.17 16 14 C 0.05 1.77 5.33 86.65 0.46 2.23 16 15 C -0.12 -3.86 5.13 31.78 0.16 -3.70 16 16 C -0.07 -2.21 2.75 -9.41 -0.03 -2.24 16 17 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 18 C 0.10 2.62 2.88 44.92 0.13 2.75 16 19 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16 20 C -0.18 -3.43 9.28 71.98 0.67 -2.76 16 21 N -0.85 -19.53 9.05 -168.67 -1.53 -21.06 16 22 C 0.07 2.80 5.76 86.77 0.50 3.30 16 23 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.06 2.27 7.75 -2.39 -0.02 2.25 16 26 H 0.06 3.39 5.95 -2.39 -0.01 3.38 16 27 H 0.03 1.44 7.04 -2.39 -0.02 1.42 16 28 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.04 1.99 5.67 -2.39 -0.01 1.98 16 31 H 0.09 2.26 8.11 -2.39 -0.02 2.25 16 32 H 0.05 1.73 7.63 -2.39 -0.02 1.72 16 33 H 0.06 1.22 7.32 -2.38 -0.02 1.21 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.35 6.69 9.00 -89.70 -0.81 5.88 16 37 H 0.35 6.60 9.07 -89.70 -0.81 5.79 16 38 H 0.02 0.89 6.96 -2.39 -0.02 0.88 16 39 H 0.06 2.34 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -60.79 297.27 -0.37 -61.16 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -0.60 Total: 20.76 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 3.44 Total: -26.81 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -5.24 Total: -101.34 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -60.79 -0.37 -61.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252774552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.583 kcal (2) G-P(sol) polarization free energy of solvation -60.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds