Wall clock time and date at job start Mon Mar 30 2020 03:08:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52995 * 109.47325 * 2 1
4 4 H 1.09003 * 109.47161 * 305.00590 * 3 2 1
5 5 C 1.50693 * 109.47321 * 185.00240 * 3 2 1
6 6 H 1.08003 * 120.00079 * 240.00270 * 5 3 2
7 7 C 1.37880 * 120.00056 * 59.99753 * 5 3 2
8 8 N 1.31507 * 119.99805 * 0.02562 * 7 5 3
9 9 Si 1.86797 * 119.99863 * 179.97438 * 7 5 3
10 10 H 1.48502 * 109.46807 * 90.00639 * 9 7 5
11 11 H 1.48507 * 109.46991 * 210.00108 * 9 7 5
12 12 H 1.48498 * 109.47691 * 330.00656 * 9 7 5
13 13 N 1.46906 * 109.46837 * 65.00286 * 3 2 1
14 14 C 1.47436 * 110.99898 * 69.87309 * 13 3 2
15 15 C 1.54324 * 107.23089 * 123.25894 * 14 13 3
16 16 C 1.55140 * 103.01888 * 22.28261 * 15 14 13
17 17 H 1.08998 * 110.99225 * 82.48047 * 16 15 14
18 18 C 1.52999 * 110.98904 * 206.25665 * 16 15 14
19 19 H 1.09002 * 109.47343 * 58.54538 * 18 16 15
20 20 C 1.53003 * 109.47314 * 298.54366 * 18 16 15
21 21 N 1.46899 * 109.47347 * 178.54658 * 18 16 15
22 22 C 1.47851 * 110.99786 * 190.71864 * 13 3 2
23 23 H 1.08998 * 109.47170 * 59.99761 * 1 2 3
24 24 H 1.08998 * 109.47309 * 180.02562 * 1 2 3
25 25 H 1.09002 * 109.47095 * 299.99727 * 1 2 3
26 26 H 1.09001 * 109.46699 * 239.99907 * 2 1 3
27 27 H 1.08998 * 109.47170 * 120.00239 * 2 1 3
28 28 H 0.97001 * 119.99893 * 180.02562 * 8 7 5
29 29 H 1.08998 * 109.88931 * 242.66034 * 14 13 3
30 30 H 1.08996 * 109.89509 * 3.69403 * 14 13 3
31 31 H 1.08995 * 110.70829 * 140.66528 * 15 14 13
32 32 H 1.08998 * 110.70384 * 263.72400 * 15 14 13
33 33 H 1.09008 * 109.46618 * 60.00029 * 20 18 16
34 34 H 1.08997 * 109.47482 * 179.97438 * 20 18 16
35 35 H 1.08999 * 109.47420 * 300.00720 * 20 18 16
36 36 H 1.00897 * 110.99850 * 59.99548 * 21 18 16
37 37 H 1.00895 * 111.00495 * 183.95364 * 21 18 16
38 38 H 1.08997 * 110.37354 * 332.46432 * 22 13 3
39 39 H 1.08994 * 110.37029 * 94.80655 * 22 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6054 1.9815 -0.8418
5 6 3.5419 1.4442 -0.1239
6 1 4.1472 1.8888 0.6523
7 6 4.1432 0.8783 -1.2280
8 7 3.4061 0.3374 -2.1733
9 14 6.0049 0.8812 -1.3819
10 1 6.5548 -0.3503 -0.7604
11 1 6.3828 0.9223 -2.8175
12 1 6.5570 2.0737 -0.6903
13 7 1.6515 2.0992 1.2553
14 6 2.4043 1.5461 2.3960
15 6 3.1300 2.7243 3.0792
16 6 2.2966 3.9543 2.6327
17 1 1.4151 4.0778 3.2618
18 6 3.1498 5.2243 2.6345
19 1 4.0009 5.0912 1.9665
20 6 3.6529 5.4988 4.0531
21 7 2.3391 6.3596 2.1743
22 6 1.8983 3.5554 1.1899
23 1 -0.3633 0.5139 -0.8899
24 1 -0.3634 -1.0276 0.0005
25 1 -0.3633 0.5138 0.8900
26 1 1.8933 -0.5139 -0.8900
27 1 1.8934 -0.5139 0.8899
28 1 3.8292 -0.0611 -2.9499
29 1 1.7181 1.0751 3.0998
30 1 3.1311 0.8153 2.0414
31 1 3.1058 2.6154 4.1634
32 1 4.1576 2.8021 2.7239
33 1 4.2546 4.6564 4.3946
34 1 4.2612 6.4033 4.0543
35 1 2.8019 5.6318 4.7211
36 1 1.5433 6.5036 2.7776
37 1 2.8967 7.1976 2.1050
38 1 2.7123 3.7716 0.4980
39 1 0.9924 4.0806 0.8874
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000252774552.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:08:42
Heat of formation + Delta-G solvation = -31.579846 kcal
Electronic energy + Delta-G solvation = -16874.298676 eV
Core-core repulsion = 14429.078726 eV
Total energy + Delta-G solvation = -2445.219949 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.31943 -37.38584 -35.12908 -33.45018 -31.17903 -29.49300 -29.26463 -27.88026
-24.86299 -23.14391 -22.56022 -21.07909 -20.30234 -18.47277 -17.26943 -16.78082
-16.32804 -15.80240 -15.26210 -14.89748 -14.51987 -14.31710 -14.13005 -13.90208
-13.63183 -13.18998 -13.18607 -12.96565 -12.60706 -12.50059 -12.33050 -12.07734
-11.92213 -11.73771 -11.59789 -11.47105 -11.38521 -11.17755 -10.88101 -10.41559
-9.49616 -8.86066 -8.00714 -6.21686 1.36206 1.37751 1.46333 2.40533
3.17158 3.50062 3.60223 3.94460 4.03448 4.19911 4.40414 4.46640
4.48850 4.60701 4.73375 4.75752 4.88549 4.92960 4.98007 5.03734
5.08659 5.15971 5.19968 5.26281 5.31256 5.35764 5.46211 5.56183
5.60000 5.67857 5.81275 6.10117 6.23045 6.35664 6.47026 6.68213
6.73785 7.00536 7.47603 8.94787
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.022493 B = 0.009845 C = 0.007863
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1244.543917 B = 2843.520335 C = 3560.185070
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.103 4.103
3 C 0.216 3.784
4 H -0.006 1.006
5 C -0.541 4.541
6 H 0.054 0.946
7 C 0.017 3.983
8 N -0.914 5.914
9 Si 0.945 3.055
10 H -0.276 1.276
11 H -0.285 1.285
12 H -0.272 1.272
13 N -0.533 5.533
14 C 0.045 3.955
15 C -0.122 4.122
16 C -0.073 4.073
17 H 0.085 0.915
18 C 0.101 3.899
19 H 0.055 0.945
20 C -0.175 4.175
21 N -0.850 5.850
22 C 0.070 3.930
23 H 0.030 0.970
24 H 0.046 0.954
25 H 0.056 0.944
26 H 0.061 0.939
27 H 0.029 0.971
28 H 0.260 0.740
29 H 0.066 0.934
30 H 0.044 0.956
31 H 0.089 0.911
32 H 0.050 0.950
33 H 0.060 0.940
34 H 0.061 0.939
35 H 0.065 0.935
36 H 0.347 0.653
37 H 0.347 0.653
38 H 0.019 0.981
39 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.852 7.779 11.675 14.055
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.142 4.142
3 C 0.108 3.892
4 H 0.012 0.988
5 C -0.580 4.580
6 H 0.072 0.928
7 C -0.183 4.183
8 N -0.553 5.553
9 Si 0.771 3.229
10 H -0.201 1.201
11 H -0.211 1.211
12 H -0.197 1.197
13 N -0.256 5.256
14 C -0.083 4.083
15 C -0.161 4.161
16 C -0.092 4.092
17 H 0.104 0.896
18 C -0.011 4.011
19 H 0.073 0.927
20 C -0.235 4.235
21 N -0.380 5.380
22 C -0.059 4.059
23 H 0.049 0.951
24 H 0.065 0.935
25 H 0.075 0.925
26 H 0.079 0.921
27 H 0.048 0.952
28 H 0.069 0.931
29 H 0.084 0.916
30 H 0.063 0.937
31 H 0.107 0.893
32 H 0.068 0.932
33 H 0.079 0.921
34 H 0.080 0.920
35 H 0.084 0.916
36 H 0.160 0.840
37 H 0.161 0.839
38 H 0.037 0.963
39 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -1.494 7.165 10.881 13.114
hybrid contribution 2.167 0.297 0.008 2.188
sum 0.674 7.462 10.889 13.218
Atomic orbital electron populations
1.21565 0.96436 0.99753 1.00535 1.21402 0.94442 0.98259 1.00095
1.19160 0.91945 0.91431 0.86660 0.98783 1.22008 0.93778 1.37058
1.05144 0.92792 1.25649 1.01738 0.95226 0.95650 1.70013 1.36185
1.39260 1.09858 0.85761 0.81607 0.78404 0.77110 1.20128 1.21083
1.19724 1.63837 1.54195 1.03258 1.04303 1.22684 0.95667 0.97293
0.92626 1.22719 0.98231 0.94382 1.00724 1.22183 0.98006 0.93486
0.95557 0.89644 1.21256 0.94565 0.90488 0.94797 0.92713 1.22532
1.01856 1.02141 0.96930 1.58733 1.12863 1.08053 1.58394 1.22671
0.98384 0.88361 0.96440 0.95094 0.93496 0.92485 0.92084 0.95197
0.93070 0.91602 0.93728 0.89278 0.93159 0.92118 0.91975 0.91563
0.83992 0.83924 0.96273 0.92347
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.26 9.80 71.98 0.71 -4.56 16
2 C -0.10 -5.12 5.21 30.59 0.16 -4.96 16
3 C 0.22 11.16 1.62 44.16 0.07 11.23 16
4 H -0.01 -0.34 8.07 -2.39 -0.02 -0.36 16
5 C -0.54 -29.64 6.24 25.60 0.16 -29.48 16
6 H 0.05 2.94 6.22 -2.91 -0.02 2.92 16
7 C 0.02 0.93 5.29 84.66 0.45 1.38 16
8 N -0.91 -53.36 11.29 21.45 0.24 -53.12 16
9 Si 0.94 44.20 29.54 68.60 2.03 46.23 16
10 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16
11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16
12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16
13 N -0.53 -23.21 4.58 -864.77 -3.96 -27.17 16
14 C 0.05 1.77 5.33 86.65 0.46 2.23 16
15 C -0.12 -3.86 5.13 31.78 0.16 -3.70 16
16 C -0.07 -2.21 2.75 -9.41 -0.03 -2.24 16
17 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16
18 C 0.10 2.62 2.88 44.92 0.13 2.75 16
19 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16
20 C -0.18 -3.43 9.28 71.98 0.67 -2.76 16
21 N -0.85 -19.53 9.05 -168.67 -1.53 -21.06 16
22 C 0.07 2.80 5.76 86.77 0.50 3.30 16
23 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16
24 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16
25 H 0.06 2.27 7.75 -2.39 -0.02 2.25 16
26 H 0.06 3.39 5.95 -2.39 -0.01 3.38 16
27 H 0.03 1.44 7.04 -2.39 -0.02 1.42 16
28 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16
29 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16
30 H 0.04 1.99 5.67 -2.39 -0.01 1.98 16
31 H 0.09 2.26 8.11 -2.39 -0.02 2.25 16
32 H 0.05 1.73 7.63 -2.39 -0.02 1.72 16
33 H 0.06 1.22 7.32 -2.38 -0.02 1.21 16
34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16
36 H 0.35 6.69 9.00 -89.70 -0.81 5.88 16
37 H 0.35 6.60 9.07 -89.70 -0.81 5.79 16
38 H 0.02 0.89 6.96 -2.39 -0.02 0.88 16
39 H 0.06 2.34 8.14 -2.39 -0.02 2.33 16
Total: -1.00 -60.79 297.27 -0.37 -61.16
By element:
Atomic # 1 Polarization: 21.36 SS G_CDS: -0.60 Total: 20.76 kcal
Atomic # 6 Polarization: -30.25 SS G_CDS: 3.44 Total: -26.81 kcal
Atomic # 7 Polarization: -96.10 SS G_CDS: -5.24 Total: -101.34 kcal
Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal
Total: -60.79 -0.37 -61.16 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000252774552.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.583 kcal
(2) G-P(sol) polarization free energy of solvation -60.789 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.205 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.375 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.163 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.580 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds