Wall clock time and date at job start Mon Mar 30 2020 03:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46967 * 2 1 4 4 H 1.08999 * 109.47079 * 303.40423 * 3 2 1 5 5 C 1.53000 * 109.46813 * 63.40960 * 3 2 1 6 6 N 1.46902 * 109.46631 * 183.40701 * 3 2 1 7 7 C 1.47440 * 111.00007 * 63.02352 * 6 3 2 8 8 C 1.54315 * 107.23307 * 123.25484 * 7 6 3 9 9 C 1.55145 * 103.02044 * 22.28300 * 8 7 6 10 10 H 1.09004 * 110.99336 * 82.43539 * 9 8 7 11 11 N 1.46495 * 110.99204 * 206.21523 * 9 8 7 12 12 C 1.46509 * 119.99752 * 58.54925 * 11 9 8 13 13 C 1.36941 * 120.00318 * 238.54302 * 11 9 8 14 14 H 1.07998 * 119.99677 * 327.59633 * 13 11 9 15 15 C 1.38812 * 119.99726 * 147.59609 * 13 11 9 16 16 N 1.31618 * 119.99844 * 155.38780 * 15 13 11 17 17 Si 1.86799 * 120.00176 * 335.37736 * 15 13 11 18 18 H 1.48505 * 109.46786 * 95.27967 * 17 15 13 19 19 H 1.48492 * 109.47326 * 215.27977 * 17 15 13 20 20 H 1.48498 * 109.47347 * 335.28189 * 17 15 13 21 21 C 1.47848 * 110.99666 * 183.86489 * 6 3 2 22 22 H 1.08996 * 109.46974 * 293.96391 * 1 2 3 23 23 H 1.09005 * 109.47126 * 173.96595 * 1 2 3 24 24 H 1.08995 * 109.46995 * 53.96920 * 1 2 3 25 25 H 1.09005 * 109.46695 * 120.00053 * 2 1 3 26 26 H 1.08997 * 109.47124 * 239.99717 * 2 1 3 27 27 H 1.08994 * 109.47110 * 299.99320 * 5 3 2 28 28 H 1.08999 * 109.47736 * 59.99866 * 5 3 2 29 29 H 1.09007 * 109.46818 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.88451 * 242.65736 * 7 6 3 31 31 H 1.08996 * 109.89306 * 3.84774 * 7 6 3 32 32 H 1.09000 * 110.70568 * 140.66432 * 8 7 6 33 33 H 1.08992 * 110.71146 * 263.72591 * 8 7 6 34 34 H 1.08993 * 109.47063 * 85.20828 * 12 11 9 35 35 H 1.09002 * 109.46822 * 205.20913 * 12 11 9 36 36 H 1.08996 * 109.47106 * 325.20384 * 12 11 9 37 37 H 0.96995 * 120.00068 * 179.97438 * 16 15 13 38 38 H 1.08998 * 110.37311 * 332.47041 * 21 6 3 39 39 H 1.09003 * 110.37315 * 94.80377 * 21 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6277 1.9736 -0.8579 5 6 1.6013 2.1385 1.2900 6 7 3.5068 1.4433 -0.0823 7 6 3.9652 0.8435 -1.3488 8 6 4.8446 1.8935 -2.0599 9 6 5.2989 2.8144 -0.8969 10 1 6.1553 2.3889 -0.3736 11 7 5.6013 4.1629 -1.3827 12 6 4.5690 4.9421 -2.0710 13 6 6.8487 4.6952 -1.1935 14 1 7.4195 4.4343 -0.3145 15 6 7.3795 5.5702 -2.1314 16 7 8.3007 6.4394 -1.7732 17 14 6.7867 5.5138 -3.9019 18 1 5.7155 6.5235 -4.0976 19 1 7.9204 5.8119 -4.8133 20 1 6.2526 4.1611 -4.2023 21 6 4.0418 2.8186 0.0082 22 1 -0.3633 0.4174 0.9391 23 1 -0.3634 -1.0220 -0.1080 24 1 -0.3633 0.6045 -0.8310 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 0.5130 2.1379 1.3510 28 1 2.0136 1.6074 2.1478 29 1 1.9642 3.1664 1.2897 30 1 4.5504 -0.0529 -1.1441 31 1 3.1072 0.5944 -1.9731 32 1 5.7038 1.4191 -2.5340 33 1 4.2619 2.4521 -2.7922 34 1 3.9549 5.4614 -1.3354 35 1 5.0423 5.6711 -2.7289 36 1 3.9420 4.2736 -2.6609 37 1 8.6718 7.0505 -2.4286 38 1 3.3095 3.5357 -0.3627 39 1 4.3156 3.0523 1.0370 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259371270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:06 Heat of formation + Delta-G solvation = 26.385827 kcal Electronic energy + Delta-G solvation = -16658.940886 eV Core-core repulsion = 14216.234517 eV Total energy + Delta-G solvation = -2442.706369 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.21010 -36.13415 -34.02356 -31.52604 -30.39100 -28.24074 -27.64984 -26.18060 -24.30830 -22.47009 -21.40730 -19.58070 -19.10578 -16.92234 -16.01806 -15.75348 -15.20563 -14.44373 -14.00449 -13.69208 -13.16461 -13.09616 -12.98919 -12.52608 -12.25448 -12.20170 -12.04489 -11.81825 -11.63153 -11.21542 -10.95887 -10.89900 -10.75430 -10.49436 -10.46017 -10.41017 -10.02622 -9.83765 -9.51817 -8.52187 -7.99811 -6.90257 -6.00029 -3.35252 3.29799 3.46508 3.51520 4.14611 4.52046 4.85731 4.92515 5.00812 5.17618 5.27381 5.28305 5.43320 5.52868 5.55394 5.58606 5.65917 5.79738 5.84937 5.91416 5.98699 6.03106 6.04497 6.12659 6.20378 6.27811 6.34175 6.37813 6.44471 6.52402 6.68734 6.78552 6.89302 7.29545 7.43827 8.00824 8.35210 8.96445 9.70969 10.09493 11.15854 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.049113 B = 0.006646 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.976601 B = 4212.315649 C = 4331.744893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.077 3.923 4 H 0.036 0.964 5 C -0.146 4.146 6 N -0.526 5.526 7 C 0.045 3.955 8 C -0.166 4.166 9 C 0.175 3.825 10 H 0.085 0.915 11 N -0.598 5.598 12 C 0.109 3.891 13 C -0.268 4.268 14 H 0.083 0.917 15 C 0.032 3.968 16 N -0.899 5.899 17 Si 0.880 3.120 18 H -0.288 1.288 19 H -0.303 1.303 20 H -0.271 1.271 21 C 0.029 3.971 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.015 0.985 35 H 0.049 0.951 36 H 0.027 0.973 37 H 0.263 0.737 38 H 0.044 0.956 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.833 -10.953 1.948 17.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.032 4.032 4 H 0.053 0.947 5 C -0.204 4.204 6 N -0.251 5.251 7 C -0.083 4.083 8 C -0.207 4.207 9 C 0.066 3.934 10 H 0.103 0.897 11 N -0.320 5.320 12 C -0.036 4.036 13 C -0.397 4.397 14 H 0.101 0.899 15 C -0.168 4.168 16 N -0.540 5.540 17 Si 0.711 3.289 18 H -0.217 1.217 19 H -0.231 1.231 20 H -0.196 1.196 21 C -0.100 4.100 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.516 -11.088 2.327 17.636 hybrid contribution -0.620 0.577 -1.869 2.051 sum -14.136 -10.511 0.459 17.621 Atomic orbital electron populations 1.21805 0.95995 1.01324 1.01774 1.21586 0.95075 0.96242 1.02509 1.21799 0.88282 0.95770 0.97342 0.94654 1.21900 1.00355 1.00681 0.97425 1.63621 1.08032 1.19384 1.34051 1.22737 0.97927 0.98043 0.89590 1.23338 0.99562 0.97801 0.99983 1.21543 0.95162 0.85017 0.91704 0.89685 1.44021 1.09587 1.10993 1.67425 1.21306 0.91903 0.94818 0.95525 1.18853 0.92362 1.24232 1.04206 0.89924 1.25345 0.96329 0.97346 0.97786 1.69892 1.30962 1.19133 1.34041 0.86931 0.76523 0.78262 0.87174 1.21669 1.23086 1.19603 1.23469 0.97644 0.87790 1.01118 0.92514 0.92886 0.93016 0.91276 0.92086 0.92523 0.91952 0.92456 0.91013 0.93516 0.91283 0.92053 0.96643 0.93306 0.95466 0.92712 0.93721 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.47 37.16 0.35 -1.02 16 2 C -0.12 -1.27 5.39 -26.73 -0.14 -1.42 16 3 C 0.08 1.00 1.71 -67.71 -0.12 0.88 16 4 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 5 C -0.15 -1.75 8.74 37.16 0.32 -1.42 16 6 N -0.53 -8.01 5.03 -223.30 -1.12 -9.14 16 7 C 0.05 0.67 6.11 -2.84 -0.02 0.65 16 8 C -0.17 -2.96 6.51 -24.91 -0.16 -3.12 16 9 C 0.17 3.53 3.54 -65.79 -0.23 3.30 16 10 H 0.09 1.79 7.96 -51.93 -0.41 1.38 16 11 N -0.60 -14.40 2.60 -171.04 -0.45 -14.85 16 12 C 0.11 2.45 8.19 59.85 0.49 2.94 16 13 C -0.27 -7.57 9.90 -15.06 -0.15 -7.72 16 14 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 15 C 0.03 0.93 5.27 -17.43 -0.09 0.84 16 16 N -0.90 -27.60 13.97 55.49 0.78 -26.83 16 17 Si 0.88 22.51 24.97 -169.99 -4.25 18.27 16 18 H -0.29 -7.17 6.62 56.52 0.37 -6.80 16 19 H -0.30 -7.84 7.11 56.52 0.40 -7.43 16 20 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 21 C 0.03 0.51 4.91 -2.30 -0.01 0.50 16 22 H 0.06 0.49 6.83 -51.93 -0.35 0.13 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.68 6.60 -51.93 -0.34 0.33 16 27 H 0.06 0.57 6.65 -51.93 -0.35 0.23 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.74 6.86 -51.92 -0.36 0.39 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.64 6.57 -51.93 -0.34 0.30 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.14 6.28 -51.93 -0.33 0.81 16 34 H 0.02 0.33 7.92 -51.93 -0.41 -0.08 16 35 H 0.05 1.19 2.99 -51.93 -0.16 1.03 16 36 H 0.03 0.55 6.30 -51.93 -0.33 0.22 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.04 0.80 6.24 -51.93 -0.32 0.48 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 289.86 15.07 4.37 4.37 Total: -1.00 -29.63 289.86 -7.09 -36.73 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -6.66 Total: -2.96 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 0.24 Total: -5.59 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.79 Total: -50.81 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.25 Total: 18.27 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.63 -7.09 -36.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259371270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.112 kcal (2) G-P(sol) polarization free energy of solvation -29.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds