Wall clock time and date at job start Mon Mar 30 2020 03:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46967 * 2 1 4 4 H 1.08999 * 109.47079 * 303.40423 * 3 2 1 5 5 C 1.53000 * 109.46813 * 63.40960 * 3 2 1 6 6 N 1.46902 * 109.46631 * 183.40701 * 3 2 1 7 7 C 1.47440 * 111.00007 * 63.02352 * 6 3 2 8 8 C 1.54315 * 107.23307 * 123.25484 * 7 6 3 9 9 C 1.55145 * 103.02044 * 22.28300 * 8 7 6 10 10 H 1.09004 * 110.99336 * 82.43539 * 9 8 7 11 11 N 1.46495 * 110.99204 * 206.21523 * 9 8 7 12 12 C 1.46509 * 119.99752 * 58.54925 * 11 9 8 13 13 C 1.36941 * 120.00318 * 238.54302 * 11 9 8 14 14 H 1.07998 * 119.99677 * 327.59633 * 13 11 9 15 15 C 1.38812 * 119.99726 * 147.59609 * 13 11 9 16 16 N 1.31618 * 119.99844 * 155.38780 * 15 13 11 17 17 Si 1.86799 * 120.00176 * 335.37736 * 15 13 11 18 18 H 1.48505 * 109.46786 * 95.27967 * 17 15 13 19 19 H 1.48492 * 109.47326 * 215.27977 * 17 15 13 20 20 H 1.48498 * 109.47347 * 335.28189 * 17 15 13 21 21 C 1.47848 * 110.99666 * 183.86489 * 6 3 2 22 22 H 1.08996 * 109.46974 * 293.96391 * 1 2 3 23 23 H 1.09005 * 109.47126 * 173.96595 * 1 2 3 24 24 H 1.08995 * 109.46995 * 53.96920 * 1 2 3 25 25 H 1.09005 * 109.46695 * 120.00053 * 2 1 3 26 26 H 1.08997 * 109.47124 * 239.99717 * 2 1 3 27 27 H 1.08994 * 109.47110 * 299.99320 * 5 3 2 28 28 H 1.08999 * 109.47736 * 59.99866 * 5 3 2 29 29 H 1.09007 * 109.46818 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.88451 * 242.65736 * 7 6 3 31 31 H 1.08996 * 109.89306 * 3.84774 * 7 6 3 32 32 H 1.09000 * 110.70568 * 140.66432 * 8 7 6 33 33 H 1.08992 * 110.71146 * 263.72591 * 8 7 6 34 34 H 1.08993 * 109.47063 * 85.20828 * 12 11 9 35 35 H 1.09002 * 109.46822 * 205.20913 * 12 11 9 36 36 H 1.08996 * 109.47106 * 325.20384 * 12 11 9 37 37 H 0.96995 * 120.00068 * 179.97438 * 16 15 13 38 38 H 1.08998 * 110.37311 * 332.47041 * 21 6 3 39 39 H 1.09003 * 110.37315 * 94.80377 * 21 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6277 1.9736 -0.8579 5 6 1.6013 2.1385 1.2900 6 7 3.5068 1.4433 -0.0823 7 6 3.9652 0.8435 -1.3488 8 6 4.8446 1.8935 -2.0599 9 6 5.2989 2.8144 -0.8969 10 1 6.1553 2.3889 -0.3736 11 7 5.6013 4.1629 -1.3827 12 6 4.5690 4.9421 -2.0710 13 6 6.8487 4.6952 -1.1935 14 1 7.4195 4.4343 -0.3145 15 6 7.3795 5.5702 -2.1314 16 7 8.3007 6.4394 -1.7732 17 14 6.7867 5.5138 -3.9019 18 1 5.7155 6.5235 -4.0976 19 1 7.9204 5.8119 -4.8133 20 1 6.2526 4.1611 -4.2023 21 6 4.0418 2.8186 0.0082 22 1 -0.3633 0.4174 0.9391 23 1 -0.3634 -1.0220 -0.1080 24 1 -0.3633 0.6045 -0.8310 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 0.5130 2.1379 1.3510 28 1 2.0136 1.6074 2.1478 29 1 1.9642 3.1664 1.2897 30 1 4.5504 -0.0529 -1.1441 31 1 3.1072 0.5944 -1.9731 32 1 5.7038 1.4191 -2.5340 33 1 4.2619 2.4521 -2.7922 34 1 3.9549 5.4614 -1.3354 35 1 5.0423 5.6711 -2.7289 36 1 3.9420 4.2736 -2.6609 37 1 8.6718 7.0505 -2.4286 38 1 3.3095 3.5357 -0.3627 39 1 4.3156 3.0523 1.0370 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259371270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:06 Heat of formation + Delta-G solvation = 6.826806 kcal Electronic energy + Delta-G solvation = -16659.789029 eV Core-core repulsion = 14216.234517 eV Total energy + Delta-G solvation = -2443.554512 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.52848 -37.66142 -35.45342 -33.52554 -31.51812 -29.69938 -28.79384 -28.11587 -25.60208 -24.05508 -22.57182 -20.91790 -20.47887 -18.98995 -17.67987 -17.15329 -16.59666 -15.78110 -15.23987 -15.00431 -14.89808 -14.61930 -14.40469 -14.20583 -13.85117 -13.51026 -13.19783 -12.99545 -12.77215 -12.59278 -12.39290 -12.30079 -12.20777 -12.05135 -12.01658 -11.57538 -11.55040 -11.35878 -11.32272 -10.65951 -9.23102 -8.87680 -8.23143 -5.55356 1.26673 1.39033 1.50074 2.38796 2.85156 3.03944 3.45510 3.81601 3.86709 4.03807 4.16937 4.23297 4.38685 4.41118 4.43437 4.52950 4.59056 4.67133 4.70169 4.74358 4.76433 4.87236 4.97282 4.99703 5.01163 5.15885 5.19745 5.22351 5.29847 5.33407 5.45863 5.48213 5.86213 6.02025 6.13969 6.27561 6.91548 7.59101 7.99437 8.96967 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.049113 B = 0.006646 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.976601 B = 4212.315649 C = 4331.744893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C 0.073 3.927 4 H 0.032 0.968 5 C -0.143 4.143 6 N -0.529 5.529 7 C 0.053 3.947 8 C -0.159 4.159 9 C 0.163 3.837 10 H 0.066 0.934 11 N -0.610 5.610 12 C 0.109 3.891 13 C -0.262 4.262 14 H 0.046 0.954 15 C -0.023 4.023 16 N -0.947 5.947 17 Si 0.947 3.053 18 H -0.275 1.275 19 H -0.308 1.308 20 H -0.261 1.261 21 C 0.045 3.955 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.042 0.958 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.025 0.975 35 H 0.032 0.968 36 H 0.054 0.946 37 H 0.264 0.736 38 H 0.043 0.957 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.378 -12.523 1.020 20.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.035 4.035 4 H 0.050 0.950 5 C -0.201 4.201 6 N -0.254 5.254 7 C -0.075 4.075 8 C -0.199 4.199 9 C 0.056 3.944 10 H 0.085 0.915 11 N -0.334 5.334 12 C -0.035 4.035 13 C -0.392 4.392 14 H 0.064 0.936 15 C -0.219 4.219 16 N -0.591 5.591 17 Si 0.777 3.223 18 H -0.202 1.202 19 H -0.237 1.237 20 H -0.185 1.185 21 C -0.084 4.084 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.108 -12.696 1.404 20.557 hybrid contribution 0.159 1.023 -1.454 1.785 sum -15.949 -11.672 -0.050 19.764 Atomic orbital electron populations 1.21779 0.94403 1.02249 1.02114 1.21544 0.96382 0.94467 1.02481 1.21944 0.86556 0.97405 0.97593 0.95017 1.21882 1.01688 0.99577 0.96907 1.63653 1.09804 1.17552 1.34377 1.22727 0.98203 0.97262 0.89265 1.23224 0.99948 0.97860 0.98887 1.21660 0.95819 0.83697 0.93241 0.91540 1.44070 1.08519 1.12764 1.68005 1.21347 0.91577 0.94942 0.95678 1.18752 0.93743 1.23757 1.02901 0.93624 1.25952 0.97112 0.97217 1.01648 1.70013 1.33323 1.20517 1.35272 0.85840 0.76065 0.78900 0.81537 1.20226 1.23702 1.18503 1.23181 0.96194 0.89310 0.99763 0.91986 0.91658 0.92944 0.91453 0.91969 0.90451 0.92090 0.93912 0.89888 0.91513 0.91532 0.92329 0.95678 0.94978 0.92731 0.92726 0.93916 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.47 71.99 0.68 -1.48 16 2 C -0.11 -2.07 5.39 30.60 0.16 -1.90 16 3 C 0.07 1.70 1.71 44.92 0.08 1.78 16 4 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 5 C -0.14 -3.10 8.74 71.98 0.63 -2.47 16 6 N -0.53 -14.97 5.03 -860.38 -4.33 -19.30 16 7 C 0.05 1.43 6.11 86.65 0.53 1.96 16 8 C -0.16 -5.33 6.51 31.78 0.21 -5.12 16 9 C 0.16 6.52 3.54 46.38 0.16 6.69 16 10 H 0.07 2.86 7.96 -2.38 -0.02 2.84 16 11 N -0.61 -29.22 2.60 -695.05 -1.81 -31.03 16 12 C 0.11 4.67 8.19 127.77 1.05 5.72 16 13 C -0.26 -15.13 9.90 84.03 0.83 -14.29 16 14 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 15 C -0.02 -1.35 5.27 84.86 0.45 -0.91 16 16 N -0.95 -59.73 13.97 21.65 0.30 -59.43 16 17 Si 0.95 46.65 24.97 68.60 1.71 48.36 16 18 H -0.27 -12.84 6.62 99.48 0.66 -12.18 16 19 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 20 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 21 C 0.05 1.53 4.91 86.77 0.43 1.96 16 22 H 0.06 0.85 6.83 -2.39 -0.02 0.83 16 23 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.06 1.15 6.60 -2.39 -0.02 1.13 16 27 H 0.08 1.34 6.65 -2.39 -0.02 1.33 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.04 1.04 6.86 -2.38 -0.02 1.02 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 1.56 6.57 -2.39 -0.02 1.55 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.06 2.00 6.28 -2.39 -0.02 1.99 16 34 H 0.03 1.03 7.92 -2.39 -0.02 1.01 16 35 H 0.03 1.49 2.99 -2.39 -0.01 1.49 16 36 H 0.05 2.04 6.30 -2.39 -0.02 2.02 16 37 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 38 H 0.04 1.47 6.24 -2.39 -0.01 1.45 16 39 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -63.88 289.86 2.04 -61.84 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 0.95 Total: 7.63 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 5.21 Total: -8.07 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -5.83 Total: -109.75 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.71 Total: 48.36 kcal Total: -63.88 2.04 -61.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259371270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.665 kcal (2) G-P(sol) polarization free energy of solvation -63.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds