Wall clock time and date at job start Mon Mar 30 2020 03:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46810 * 2 1 4 4 H 1.09010 * 109.47238 * 303.19682 * 3 2 1 5 5 C 1.53002 * 109.47303 * 183.20422 * 3 2 1 6 6 N 1.46895 * 109.47697 * 63.19949 * 3 2 1 7 7 C 1.46852 * 111.00154 * 189.90099 * 6 3 2 8 8 C 1.53037 * 109.51990 * 174.16039 * 7 6 3 9 9 C 1.53116 * 109.28150 * 59.17818 * 8 7 6 10 10 C 1.53116 * 109.16119 * 302.34328 * 9 8 7 11 11 H 1.09004 * 109.50457 * 297.71171 * 10 9 8 12 12 N 1.46499 * 109.54011 * 177.61307 * 10 9 8 13 13 C 1.36941 * 119.99763 * 85.17571 * 12 10 9 14 14 H 1.07996 * 120.00367 * 0.02562 * 13 12 10 15 15 C 1.38808 * 119.99792 * 180.02562 * 13 12 10 16 16 N 1.31623 * 120.00255 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99978 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47149 * 90.00228 * 17 15 13 19 19 H 1.48502 * 109.47617 * 209.99810 * 17 15 13 20 20 H 1.48499 * 109.47561 * 330.00477 * 17 15 13 21 21 C 1.46844 * 110.99968 * 65.68695 * 6 3 2 22 22 H 1.08994 * 109.47165 * 54.75103 * 1 2 3 23 23 H 1.09000 * 109.46807 * 174.74927 * 1 2 3 24 24 H 1.08995 * 109.47696 * 294.74625 * 1 2 3 25 25 H 1.08993 * 109.47516 * 239.99903 * 2 1 3 26 26 H 1.09005 * 109.47094 * 119.99237 * 2 1 3 27 27 H 1.09002 * 109.46651 * 299.99228 * 5 3 2 28 28 H 1.08999 * 109.47488 * 59.99652 * 5 3 2 29 29 H 1.08999 * 109.47575 * 179.97438 * 5 3 2 30 30 H 1.09000 * 109.46499 * 54.14415 * 7 6 3 31 31 H 1.08996 * 109.46133 * 294.17425 * 7 6 3 32 32 H 1.09003 * 109.50127 * 179.11984 * 8 7 6 33 33 H 1.08999 * 109.50385 * 299.23157 * 8 7 6 34 34 H 1.08999 * 109.52395 * 62.25019 * 9 8 7 35 35 H 1.08999 * 109.52557 * 182.44132 * 9 8 7 36 36 H 0.96999 * 120.00394 * 265.18457 * 12 10 9 37 37 H 0.97000 * 119.99814 * 179.97438 * 16 15 13 38 38 H 1.08997 * 109.46631 * 305.85756 * 21 6 3 39 39 H 1.09003 * 109.46290 * 65.83024 * 21 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6305 1.9727 -0.8600 5 6 3.5678 1.4434 -0.0806 6 7 1.6144 2.1124 1.2361 7 6 1.8794 3.5553 1.1708 8 6 1.2939 4.2393 2.4083 9 6 1.9307 3.6409 3.6656 10 6 1.6817 2.1302 3.6847 11 1 0.6097 1.9386 3.7324 12 7 2.3364 1.5406 4.8552 13 6 1.6932 1.5250 6.0641 14 1 0.7033 1.9471 6.1546 15 6 2.3137 0.9668 7.1732 16 7 3.5205 0.4528 7.0631 17 14 1.4368 0.9462 8.8224 18 1 0.6446 -0.3038 8.9462 19 1 2.4387 1.0076 9.9167 20 1 0.5297 2.1183 8.9154 21 6 2.2560 1.5073 2.4102 22 1 -0.3633 0.5931 -0.8392 23 1 -0.3633 -1.0234 -0.0940 24 1 -0.3634 0.4301 0.9332 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.9772 0.9134 0.7794 28 1 3.8836 0.9464 -0.9979 29 1 3.9311 2.4711 -0.0811 30 1 1.4175 3.9692 0.2744 31 1 2.9554 3.7258 1.1366 32 1 1.5043 5.3080 2.3672 33 1 0.2158 4.0810 2.4358 34 1 3.0036 3.8332 3.6573 35 1 1.4852 4.0947 4.5509 36 1 3.2254 1.1612 4.7739 37 1 3.9541 0.0631 7.8382 38 1 2.0678 0.4337 2.4141 39 1 3.3303 1.6874 2.3703 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259399562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:03 Heat of formation + Delta-G solvation = -1.334562 kcal Electronic energy + Delta-G solvation = -16640.389736 eV Core-core repulsion = 14196.481320 eV Total energy + Delta-G solvation = -2443.908416 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.27297 -35.72842 -33.68947 -31.44563 -30.83058 -29.09709 -27.97805 -24.43652 -23.69379 -23.07092 -21.37897 -19.91969 -18.86195 -17.04014 -16.11193 -14.72959 -14.59843 -14.27856 -13.93771 -13.73889 -13.61291 -13.34895 -12.86203 -12.67590 -12.52766 -12.01575 -11.82058 -11.53550 -11.10069 -10.94937 -10.87056 -10.74560 -10.61585 -10.43197 -10.31660 -10.15863 -10.04724 -9.64136 -9.56144 -8.82390 -7.92329 -6.91017 -5.72662 -3.00910 3.46254 3.51351 3.52949 4.13359 4.64893 4.87115 5.13562 5.22381 5.35544 5.41573 5.51052 5.52553 5.64124 5.70044 5.74486 5.79055 5.81162 5.92734 5.95646 6.02223 6.09581 6.17507 6.21658 6.26806 6.36642 6.47286 6.48310 6.56702 6.61164 6.70503 7.04036 7.16438 7.46750 7.50024 7.75725 8.46486 9.57030 10.15597 10.50117 11.50305 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032108 B = 0.006843 C = 0.006419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.857933 B = 4090.752636 C = 4360.911833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C 0.082 3.918 4 H 0.076 0.924 5 C -0.188 4.188 6 N -0.526 5.526 7 C 0.058 3.942 8 C -0.114 4.114 9 C -0.136 4.136 10 C 0.182 3.818 11 H 0.053 0.947 12 N -0.725 5.725 13 C -0.233 4.233 14 H 0.070 0.930 15 C -0.016 4.016 16 N -0.935 5.935 17 Si 0.906 3.094 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C 0.050 3.950 22 H 0.046 0.954 23 H 0.043 0.957 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.029 0.971 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.382 0.618 37 H 0.254 0.746 38 H 0.076 0.924 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 3.294 -15.120 15.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C -0.027 4.027 4 H 0.094 0.906 5 C -0.247 4.247 6 N -0.250 5.250 7 C -0.070 4.070 8 C -0.153 4.153 9 C -0.177 4.177 10 C 0.072 3.928 11 H 0.072 0.928 12 N -0.366 5.366 13 C -0.364 4.364 14 H 0.088 0.912 15 C -0.211 4.211 16 N -0.584 5.584 17 Si 0.737 3.263 18 H -0.218 1.218 19 H -0.219 1.219 20 H -0.208 1.208 21 C -0.079 4.079 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.215 0.785 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.530 3.234 -14.908 15.658 hybrid contribution 0.888 0.015 0.858 1.236 sum -2.641 3.248 -14.049 14.660 Atomic orbital electron populations 1.21619 0.95264 1.00326 1.02593 1.21593 0.96841 0.95333 1.01674 1.21721 0.92688 0.95452 0.92858 0.90632 1.22490 0.98064 1.01854 1.02288 1.62098 1.58436 1.02537 1.01935 1.22055 0.98194 0.88326 0.98427 1.21573 1.00835 0.98076 0.94806 1.22297 0.99788 0.99414 0.96196 1.20166 0.96578 0.90226 0.85799 0.92847 1.42383 1.19042 1.70322 1.04806 1.19245 0.99054 1.31713 0.86427 0.91160 1.24730 0.96758 1.01586 0.98038 1.69665 1.13899 1.45204 1.29614 0.86203 0.78373 0.77672 0.84044 1.21762 1.21859 1.20789 1.22438 0.96056 0.99369 0.89987 0.93516 0.93792 0.91321 0.92357 0.91501 0.91842 0.92558 0.92790 0.91740 0.95231 0.92586 0.91623 0.93181 0.92130 0.78508 0.93607 0.90614 0.95005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.72 37.16 0.36 -1.33 16 2 C -0.12 -1.42 5.30 -26.73 -0.14 -1.56 16 3 C 0.08 1.02 2.33 -67.72 -0.16 0.86 16 4 H 0.08 0.87 7.99 -51.92 -0.41 0.46 16 5 C -0.19 -2.27 8.45 37.16 0.31 -1.95 16 6 N -0.53 -7.72 4.08 -226.69 -0.92 -8.64 16 7 C 0.06 0.80 5.13 -3.83 -0.02 0.78 16 8 C -0.11 -1.70 6.09 -26.65 -0.16 -1.86 16 9 C -0.14 -2.55 5.59 -26.61 -0.15 -2.70 16 10 C 0.18 3.76 2.93 -67.85 -0.20 3.57 16 11 H 0.05 1.17 8.08 -51.93 -0.42 0.75 16 12 N -0.72 -18.51 5.13 -53.35 -0.27 -18.79 16 13 C -0.23 -6.56 9.93 -15.06 -0.15 -6.71 16 14 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 15 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 16 N -0.93 -28.55 13.06 55.49 0.72 -27.82 16 17 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 C 0.05 0.87 4.02 -3.83 -0.02 0.86 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.92 6.29 -51.93 -0.33 0.59 16 27 H 0.06 0.86 6.46 -51.93 -0.34 0.52 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.65 6.81 -51.93 -0.35 0.29 16 30 H 0.06 0.78 8.02 -51.93 -0.42 0.36 16 31 H 0.03 0.42 6.87 -51.93 -0.36 0.06 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.38 10.35 7.80 -40.82 -0.32 10.03 16 37 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.08 1.39 6.15 -51.93 -0.32 1.07 16 39 H 0.03 0.58 6.58 -51.93 -0.34 0.23 16 LS Contribution 298.29 15.07 4.50 4.50 Total: -1.00 -29.28 298.29 -8.35 -37.64 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.94 Total: 6.06 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -0.41 Total: -10.59 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.47 Total: -55.25 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.28 -8.35 -37.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259399562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.301 kcal (2) G-P(sol) polarization free energy of solvation -29.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds