Wall clock time and date at job start Mon Mar 30 2020 03:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46810 * 2 1 4 4 H 1.09010 * 109.47238 * 303.19682 * 3 2 1 5 5 C 1.53002 * 109.47303 * 183.20422 * 3 2 1 6 6 N 1.46895 * 109.47697 * 63.19949 * 3 2 1 7 7 C 1.46852 * 111.00154 * 189.90099 * 6 3 2 8 8 C 1.53037 * 109.51990 * 174.16039 * 7 6 3 9 9 C 1.53116 * 109.28150 * 59.17818 * 8 7 6 10 10 C 1.53116 * 109.16119 * 302.34328 * 9 8 7 11 11 H 1.09004 * 109.50457 * 297.71171 * 10 9 8 12 12 N 1.46499 * 109.54011 * 177.61307 * 10 9 8 13 13 C 1.36941 * 119.99763 * 85.17571 * 12 10 9 14 14 H 1.07996 * 120.00367 * 0.02562 * 13 12 10 15 15 C 1.38808 * 119.99792 * 180.02562 * 13 12 10 16 16 N 1.31623 * 120.00255 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99978 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47149 * 90.00228 * 17 15 13 19 19 H 1.48502 * 109.47617 * 209.99810 * 17 15 13 20 20 H 1.48499 * 109.47561 * 330.00477 * 17 15 13 21 21 C 1.46844 * 110.99968 * 65.68695 * 6 3 2 22 22 H 1.08994 * 109.47165 * 54.75103 * 1 2 3 23 23 H 1.09000 * 109.46807 * 174.74927 * 1 2 3 24 24 H 1.08995 * 109.47696 * 294.74625 * 1 2 3 25 25 H 1.08993 * 109.47516 * 239.99903 * 2 1 3 26 26 H 1.09005 * 109.47094 * 119.99237 * 2 1 3 27 27 H 1.09002 * 109.46651 * 299.99228 * 5 3 2 28 28 H 1.08999 * 109.47488 * 59.99652 * 5 3 2 29 29 H 1.08999 * 109.47575 * 179.97438 * 5 3 2 30 30 H 1.09000 * 109.46499 * 54.14415 * 7 6 3 31 31 H 1.08996 * 109.46133 * 294.17425 * 7 6 3 32 32 H 1.09003 * 109.50127 * 179.11984 * 8 7 6 33 33 H 1.08999 * 109.50385 * 299.23157 * 8 7 6 34 34 H 1.08999 * 109.52395 * 62.25019 * 9 8 7 35 35 H 1.08999 * 109.52557 * 182.44132 * 9 8 7 36 36 H 0.96999 * 120.00394 * 265.18457 * 12 10 9 37 37 H 0.97000 * 119.99814 * 179.97438 * 16 15 13 38 38 H 1.08997 * 109.46631 * 305.85756 * 21 6 3 39 39 H 1.09003 * 109.46290 * 65.83024 * 21 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6305 1.9727 -0.8600 5 6 3.5678 1.4434 -0.0806 6 7 1.6144 2.1124 1.2361 7 6 1.8794 3.5553 1.1708 8 6 1.2939 4.2393 2.4083 9 6 1.9307 3.6409 3.6656 10 6 1.6817 2.1302 3.6847 11 1 0.6097 1.9386 3.7324 12 7 2.3364 1.5406 4.8552 13 6 1.6932 1.5250 6.0641 14 1 0.7033 1.9471 6.1546 15 6 2.3137 0.9668 7.1732 16 7 3.5205 0.4528 7.0631 17 14 1.4368 0.9462 8.8224 18 1 0.6446 -0.3038 8.9462 19 1 2.4387 1.0076 9.9167 20 1 0.5297 2.1183 8.9154 21 6 2.2560 1.5073 2.4102 22 1 -0.3633 0.5931 -0.8392 23 1 -0.3633 -1.0234 -0.0940 24 1 -0.3634 0.4301 0.9332 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.9772 0.9134 0.7794 28 1 3.8836 0.9464 -0.9979 29 1 3.9311 2.4711 -0.0811 30 1 1.4175 3.9692 0.2744 31 1 2.9554 3.7258 1.1366 32 1 1.5043 5.3080 2.3672 33 1 0.2158 4.0810 2.4358 34 1 3.0036 3.8332 3.6573 35 1 1.4852 4.0947 4.5509 36 1 3.2254 1.1612 4.7739 37 1 3.9541 0.0631 7.8382 38 1 2.0678 0.4337 2.4141 39 1 3.3303 1.6874 2.3703 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259399562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:03 Heat of formation + Delta-G solvation = -19.879199 kcal Electronic energy + Delta-G solvation = -16641.193892 eV Core-core repulsion = 14196.481320 eV Total energy + Delta-G solvation = -2444.712571 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.53728 -37.21954 -35.34601 -33.18832 -32.14158 -30.29345 -29.62486 -25.88490 -25.44475 -24.20191 -22.85807 -21.17399 -20.27675 -19.03445 -17.45369 -16.51761 -15.91429 -15.56204 -15.39248 -15.17566 -15.04703 -14.59547 -14.43215 -14.00660 -13.89527 -13.34844 -12.94467 -12.88307 -12.82241 -12.57005 -12.26534 -12.08926 -12.05914 -11.88335 -11.77814 -11.61234 -11.54914 -11.30780 -11.09731 -10.82058 -9.12334 -9.00567 -7.94611 -5.23265 1.46231 1.48146 1.56502 2.54327 2.97645 3.38608 3.81528 3.96454 4.03184 4.14871 4.24512 4.31730 4.35455 4.46118 4.50163 4.58115 4.67094 4.70260 4.81939 4.85304 4.90224 4.95190 5.05288 5.11344 5.18071 5.21151 5.24992 5.28778 5.45183 5.46992 5.50341 5.60114 5.61697 6.18656 6.30710 6.33844 7.33095 8.08757 8.32669 9.29149 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032108 B = 0.006843 C = 0.006419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.857933 B = 4090.752636 C = 4360.911833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 C 0.081 3.919 4 H 0.099 0.901 5 C -0.184 4.184 6 N -0.528 5.528 7 C 0.058 3.942 8 C -0.106 4.106 9 C -0.129 4.129 10 C 0.178 3.822 11 H 0.039 0.961 12 N -0.738 5.738 13 C -0.236 4.236 14 H 0.073 0.927 15 C -0.077 4.077 16 N -0.971 5.971 17 Si 0.972 3.028 18 H -0.287 1.287 19 H -0.295 1.295 20 H -0.270 1.270 21 C 0.068 3.932 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.080 0.920 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.095 0.905 31 H 0.030 0.970 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.370 0.630 37 H 0.251 0.749 38 H 0.062 0.938 39 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.818 4.205 -16.892 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C -0.027 4.027 4 H 0.117 0.883 5 C -0.242 4.242 6 N -0.253 5.253 7 C -0.070 4.070 8 C -0.144 4.144 9 C -0.169 4.169 10 C 0.070 3.930 11 H 0.057 0.943 12 N -0.377 5.377 13 C -0.368 4.368 14 H 0.091 0.909 15 C -0.268 4.268 16 N -0.622 5.622 17 Si 0.801 3.199 18 H -0.214 1.214 19 H -0.221 1.221 20 H -0.195 1.195 21 C -0.060 4.060 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.201 0.799 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -4.479 4.172 -16.722 17.807 hybrid contribution 1.147 -0.257 1.323 1.770 sum -3.332 3.914 -15.399 16.235 Atomic orbital electron populations 1.21571 0.95080 1.00870 1.01868 1.21604 0.96957 0.95260 1.01587 1.21844 0.93103 0.95568 0.92154 0.88343 1.22441 0.97557 1.01914 1.02337 1.62087 1.58143 1.03307 1.01750 1.22132 0.98458 0.87444 0.98952 1.21525 1.00480 0.99358 0.93054 1.22125 0.99326 0.97692 0.97755 1.20341 0.95400 0.91590 0.85681 0.94296 1.42571 1.18670 1.70788 1.05690 1.19587 0.99087 1.30603 0.87541 0.90920 1.25544 0.97653 1.02050 1.01599 1.69824 1.15459 1.46642 1.30281 0.85156 0.77253 0.77962 0.79513 1.21375 1.22139 1.19499 1.22066 0.95414 0.98515 0.90048 0.91953 0.93144 0.93766 0.90185 0.93832 0.94050 0.90511 0.92581 0.88682 0.95217 0.90157 0.91498 0.94206 0.94147 0.79851 0.94069 0.91942 0.95806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.72 71.98 0.70 -2.34 16 2 C -0.12 -2.63 5.30 30.59 0.16 -2.47 16 3 C 0.08 1.83 2.33 44.92 0.10 1.93 16 4 H 0.10 1.85 7.99 -2.38 -0.02 1.83 16 5 C -0.18 -4.04 8.45 71.98 0.61 -3.43 16 6 N -0.53 -14.67 4.08 -871.11 -3.55 -18.22 16 7 C 0.06 1.43 5.13 86.32 0.44 1.87 16 8 C -0.11 -2.92 6.09 30.65 0.19 -2.73 16 9 C -0.13 -4.80 5.59 30.67 0.17 -4.63 16 10 C 0.18 7.50 2.93 45.04 0.13 7.63 16 11 H 0.04 1.74 8.08 -2.38 -0.02 1.72 16 12 N -0.74 -38.85 5.13 -322.69 -1.65 -40.50 16 13 C -0.24 -13.56 9.93 84.03 0.83 -12.72 16 14 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 15 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 16 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 17 Si 0.97 47.17 29.55 68.60 2.03 49.20 16 18 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 19 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 21 C 0.07 2.42 4.02 86.33 0.35 2.77 16 22 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.04 1.19 7.85 -2.39 -0.02 1.17 16 25 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.04 1.19 6.29 -2.38 -0.01 1.17 16 27 H 0.04 1.09 6.46 -2.39 -0.02 1.07 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.21 6.81 -2.39 -0.02 1.19 16 30 H 0.09 1.86 8.02 -2.39 -0.02 1.84 16 31 H 0.03 0.76 6.87 -2.39 -0.02 0.74 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.37 20.88 7.80 -92.71 -0.72 20.16 16 37 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 38 H 0.06 2.37 6.15 -2.39 -0.01 2.35 16 39 H 0.02 0.88 6.58 -2.39 -0.02 0.86 16 Total: -1.00 -63.59 298.29 1.54 -62.06 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.28 Total: 26.04 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 4.16 Total: -18.15 kcal Atomic # 7 Polarization: -114.23 SS G_CDS: -4.92 Total: -119.15 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -63.59 1.54 -62.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259399562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.176 kcal (2) G-P(sol) polarization free energy of solvation -63.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds