Wall clock time and date at job start Mon Mar 30 2020 03:15:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52999 * 109.47317 * 2 1
4 4 N 1.46894 * 109.47515 * 120.00121 * 2 1 3
5 5 C 1.46841 * 111.00009 * 299.21342 * 4 2 1
6 6 C 1.53040 * 109.52433 * 174.15732 * 5 4 2
7 7 C 1.53121 * 109.27699 * 59.17931 * 6 5 4
8 8 C 1.53007 * 109.52149 * 182.43884 * 7 6 5
9 9 N 1.46499 * 109.47064 * 294.68389 * 8 7 6
10 10 C 1.36943 * 119.99619 * 180.02562 * 9 8 7
11 11 H 1.07999 * 119.99819 * 359.97438 * 10 9 8
12 12 C 1.38805 * 119.99690 * 179.97438 * 10 9 8
13 13 N 1.31620 * 119.99834 * 179.97438 * 12 10 9
14 14 Si 1.86801 * 120.00084 * 0.02562 * 12 10 9
15 15 H 1.48500 * 109.47467 * 90.00008 * 14 12 10
16 16 H 1.48510 * 109.46778 * 209.99747 * 14 12 10
17 17 H 1.48498 * 109.46897 * 329.99316 * 14 12 10
18 18 C 1.53121 * 109.15988 * 302.34517 * 7 6 5
19 19 C 1.46850 * 111.00522 * 174.99713 * 4 2 1
20 20 H 1.09002 * 109.47153 * 299.99641 * 1 2 3
21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
22 22 H 1.09004 * 109.47261 * 59.99813 * 1 2 3
23 23 H 1.09002 * 109.47153 * 240.00359 * 2 1 3
24 24 H 1.09002 * 109.46716 * 60.00091 * 3 2 1
25 25 H 1.09000 * 109.47486 * 180.02562 * 3 2 1
26 26 H 1.09001 * 109.47362 * 300.00732 * 3 2 1
27 27 H 1.09001 * 109.46345 * 294.17005 * 5 4 2
28 28 H 1.09000 * 109.46432 * 54.14079 * 5 4 2
29 29 H 1.08997 * 109.50332 * 299.23389 * 6 5 4
30 30 H 1.08998 * 109.50497 * 179.11583 * 6 5 4
31 31 H 1.09001 * 109.57729 * 62.28139 * 7 6 5
32 32 H 1.08999 * 109.46648 * 54.68109 * 8 7 6
33 33 H 1.08997 * 109.46565 * 174.67784 * 8 7 6
34 34 H 0.96993 * 120.00270 * 0.02562 * 9 8 7
35 35 H 0.97006 * 119.99929 * 180.02562 * 13 12 10
36 36 H 1.08999 * 109.49895 * 297.71693 * 18 7 6
37 37 H 1.08996 * 109.53497 * 177.62117 * 18 7 6
38 38 H 1.08998 * 109.46273 * 305.86025 * 19 4 2
39 39 H 1.09004 * 109.45486 * 65.83539 * 19 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0197 -0.6925 1.1993
5 6 1.5644 -0.0159 2.4205
6 6 1.9682 -0.8420 3.6438
7 6 3.4907 -1.0032 3.6648
8 6 3.8958 -1.8794 4.8519
9 7 3.5691 -1.1892 6.1022
10 6 3.8434 -1.7843 7.3046
11 1 4.3002 -2.7626 7.3312
12 6 3.5343 -1.1302 8.4892
13 7 3.7975 -1.7023 9.6449
14 14 2.7435 0.5616 8.4431
15 1 1.2656 0.4170 8.4274
16 1 3.1527 1.3321 9.6449
17 1 3.1836 1.2805 7.2206
18 6 3.9438 -1.6664 2.3611
19 6 3.4828 -0.8165 1.1750
20 1 -0.3633 0.5138 0.8900
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3634 0.5139 -0.8900
23 1 1.8933 -0.5138 -0.8900
24 1 1.6767 1.9563 0.8900
25 1 3.1300 1.4425 -0.0005
26 1 1.6766 1.9564 -0.8899
27 1 2.0229 0.9711 2.4813
28 1 0.4797 0.0887 2.3948
29 1 1.4988 -1.8243 3.5906
30 1 1.6438 -0.3317 4.5507
31 1 3.9604 -0.0240 3.7577
32 1 3.3552 -2.8248 4.8068
33 1 4.9680 -2.0716 4.8124
34 1 3.1584 -0.3108 6.0782
35 1 3.5812 -1.2453 10.4728
36 1 3.5056 -2.6617 2.2878
37 1 5.0309 -1.7458 2.3513
38 1 3.7914 -1.2933 0.2448
39 1 3.9323 0.1743 1.2419
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259867992.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:15:01
Heat of formation + Delta-G solvation = 1.650434 kcal
Electronic energy + Delta-G solvation = -16350.394887 eV
Core-core repulsion = 13906.615911 eV
Total energy + Delta-G solvation = -2443.778976 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.55828 -36.26201 -33.85980 -31.57109 -30.71996 -29.97481 -27.38835 -26.18010
-23.20495 -23.08610 -21.21285 -20.23538 -19.12137 -17.54410 -16.15663 -15.11999
-14.71491 -14.54419 -14.30178 -14.08803 -13.87346 -13.34819 -13.11637 -12.57000
-12.48719 -12.40728 -11.93370 -11.85868 -11.55800 -11.36480 -11.25320 -11.06385
-10.85022 -10.72908 -10.34073 -10.14995 -10.02349 -9.80672 -9.51996 -8.84230
-8.25393 -7.16415 -5.72571 -3.06896 3.39456 3.42114 3.46999 3.86988
4.62766 4.69300 4.86526 4.94875 5.00995 5.14828 5.16164 5.35618
5.40283 5.44043 5.51587 5.57180 5.64984 5.65681 5.71897 5.74844
5.83576 5.90498 5.95432 6.06250 6.09492 6.15643 6.25126 6.35261
6.48888 6.58647 6.78075 6.91798 7.15761 7.15856 8.05204 8.47119
9.26879 9.99498 10.20217 11.46272
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.041074 B = 0.006089 C = 0.005636
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 681.528903 B = 4597.045571 C = 4966.997003
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.076 3.924
3 C -0.188 4.188
4 N -0.531 5.531
5 C 0.050 3.950
6 C -0.108 4.108
7 C -0.098 4.098
8 C 0.163 3.837
9 N -0.756 5.756
10 C -0.241 4.241
11 H 0.090 0.910
12 C 0.003 3.997
13 N -0.936 5.936
14 Si 0.883 3.117
15 H -0.284 1.284
16 H -0.291 1.291
17 H -0.278 1.278
18 C -0.108 4.108
19 C 0.057 3.943
20 H 0.057 0.943
21 H 0.063 0.937
22 H 0.055 0.945
23 H 0.079 0.921
24 H 0.058 0.942
25 H 0.056 0.944
26 H 0.057 0.943
27 H 0.032 0.968
28 H 0.074 0.926
29 H 0.071 0.929
30 H 0.068 0.932
31 H 0.063 0.937
32 H 0.028 0.972
33 H 0.024 0.976
34 H 0.360 0.640
35 H 0.259 0.741
36 H 0.071 0.929
37 H 0.066 0.934
38 H 0.069 0.931
39 H 0.033 0.967
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.414 4.864 -21.016 22.019
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.033 4.033
3 C -0.247 4.247
4 N -0.255 5.255
5 C -0.077 4.077
6 C -0.146 4.146
7 C -0.117 4.117
8 C 0.036 3.964
9 N -0.402 5.402
10 C -0.371 4.371
11 H 0.107 0.893
12 C -0.193 4.193
13 N -0.585 5.585
14 Si 0.714 3.286
15 H -0.211 1.211
16 H -0.218 1.218
17 H -0.204 1.204
18 C -0.146 4.146
19 C -0.071 4.071
20 H 0.076 0.924
21 H 0.082 0.918
22 H 0.074 0.926
23 H 0.097 0.903
24 H 0.077 0.923
25 H 0.075 0.925
26 H 0.077 0.923
27 H 0.051 0.949
28 H 0.093 0.907
29 H 0.090 0.910
30 H 0.087 0.913
31 H 0.082 0.918
32 H 0.046 0.954
33 H 0.042 0.958
34 H 0.193 0.807
35 H 0.069 0.931
36 H 0.090 0.910
37 H 0.084 0.916
38 H 0.088 0.912
39 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges -4.530 4.213 -20.843 21.742
hybrid contribution -0.167 2.114 0.159 2.126
sum -4.696 6.327 -20.684 22.134
Atomic orbital electron populations
1.21879 0.94468 1.02454 1.01518 1.21680 0.95723 0.92260 0.93634
1.22497 1.01526 0.98427 1.02253 1.62183 1.10841 1.50826 1.01652
1.22216 1.00133 0.95547 0.89836 1.21600 0.95833 1.00930 0.96202
1.21407 0.95760 0.99611 0.94962 1.20654 0.97317 0.94125 0.84330
1.42741 1.75636 1.19749 1.02025 1.19095 1.33716 1.01894 0.82350
0.89261 1.24658 1.01386 0.98091 0.95145 1.69706 1.53719 1.38468
0.96589 0.86560 0.79615 0.85705 0.76768 1.21058 1.21757 1.20428
1.21562 1.00195 0.99636 0.93204 1.22083 0.87328 0.98694 0.99011
0.92438 0.91800 0.92550 0.90278 0.92263 0.92540 0.92346 0.94945
0.90744 0.91023 0.91338 0.91840 0.95436 0.95759 0.80748 0.93136
0.90995 0.91560 0.91218 0.94930
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.31 8.99 37.16 0.33 -0.98 16
2 C 0.08 0.74 2.96 -67.72 -0.20 0.54 16
3 C -0.19 -1.75 8.50 37.16 0.32 -1.43 16
4 N -0.53 -6.34 4.64 -226.70 -1.05 -7.40 16
5 C 0.05 0.65 4.63 -3.84 -0.02 0.63 16
6 C -0.11 -1.66 5.22 -26.65 -0.14 -1.80 16
7 C -0.10 -1.57 2.29 -90.49 -0.21 -1.78 16
8 C 0.16 3.26 5.65 -4.04 -0.02 3.24 16
9 N -0.76 -18.54 5.16 -59.91 -0.31 -18.84 16
10 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16
11 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16
12 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16
13 N -0.94 -30.01 13.97 55.49 0.78 -29.24 16
14 Si 0.88 22.56 27.74 -169.99 -4.71 17.85 16
15 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16
16 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16
17 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16
18 C -0.11 -1.42 5.38 -26.65 -0.14 -1.56 16
19 C 0.06 0.66 5.02 -3.84 -0.02 0.64 16
20 H 0.06 0.54 6.30 -51.93 -0.33 0.21 16
21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
22 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
23 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16
24 H 0.06 0.59 6.52 -51.93 -0.34 0.26 16
25 H 0.06 0.54 6.65 -51.93 -0.35 0.19 16
26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
27 H 0.03 0.42 6.62 -51.93 -0.34 0.08 16
28 H 0.07 0.90 6.03 -51.93 -0.31 0.59 16
29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16
30 H 0.07 1.16 7.27 -51.93 -0.38 0.78 16
31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16
32 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16
33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16
34 H 0.36 8.60 4.75 -40.82 -0.19 8.40 16
35 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16
36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16
37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16
38 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16
39 H 0.03 0.38 6.73 -51.93 -0.35 0.04 16
LS Contribution 293.55 15.07 4.42 4.42
Total: -1.00 -31.25 293.55 -8.05 -39.30
By element:
Atomic # 1 Polarization: 10.40 SS G_CDS: -6.82 Total: 3.58 kcal
Atomic # 6 Polarization: -9.32 SS G_CDS: -0.35 Total: -9.68 kcal
Atomic # 7 Polarization: -54.89 SS G_CDS: -0.59 Total: -55.48 kcal
Atomic # 14 Polarization: 22.56 SS G_CDS: -4.71 Total: 17.85 kcal
Total LS contribution 4.42 Total: 4.42 kcal
Total: -31.25 -8.05 -39.30 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259867992.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.951 kcal
(2) G-P(sol) polarization free energy of solvation -31.246 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.705 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.301 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.650 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds