Wall clock time and date at job start Mon Mar 30 2020 03:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47016 * 2 1 4 4 N 1.46900 * 109.47156 * 119.99626 * 2 1 3 5 5 C 1.46849 * 110.99793 * 50.79011 * 4 2 1 6 6 C 1.53035 * 109.52263 * 185.83832 * 5 4 2 7 7 C 1.53113 * 109.27818 * 300.81877 * 6 5 4 8 8 C 1.53121 * 109.15937 * 57.65834 * 7 6 5 9 9 H 1.08998 * 109.53394 * 62.30530 * 8 7 6 10 10 N 1.46906 * 109.50389 * 182.40344 * 8 7 6 11 11 C 1.46902 * 110.99573 * 274.80109 * 10 8 7 12 12 C 1.50707 * 109.46656 * 179.97438 * 11 10 8 13 13 H 1.07995 * 120.00358 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99768 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00203 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00034 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47118 * 89.99770 * 16 14 12 18 18 H 1.48500 * 109.47037 * 209.99864 * 16 14 12 19 19 H 1.48500 * 109.47075 * 330.00240 * 16 14 12 20 20 C 1.46847 * 110.99979 * 174.99938 * 4 2 1 21 21 H 1.09000 * 109.47166 * 300.00367 * 1 2 3 22 22 H 1.09004 * 109.46851 * 60.00151 * 1 2 3 23 23 H 1.09004 * 109.47119 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47166 * 239.99633 * 2 1 3 25 25 H 1.08996 * 109.47668 * 60.00268 * 3 2 1 26 26 H 1.09008 * 109.46973 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47188 * 299.99643 * 3 2 1 28 28 H 1.08996 * 109.46612 * 305.85967 * 5 4 2 29 29 H 1.09004 * 109.46179 * 65.82364 * 5 4 2 30 30 H 1.08991 * 109.50463 * 60.76330 * 6 5 4 31 31 H 1.09006 * 109.50156 * 180.84042 * 6 5 4 32 32 H 1.08999 * 109.52656 * 297.75118 * 7 6 5 33 33 H 1.09010 * 109.52218 * 177.55990 * 7 6 5 34 34 H 1.00896 * 111.00309 * 150.84521 * 10 8 7 35 35 H 1.08990 * 109.47358 * 299.99539 * 11 10 8 36 36 H 1.09004 * 109.47457 * 60.00221 * 11 10 8 37 37 H 0.96997 * 120.00560 * 179.97438 * 15 14 12 38 38 H 1.08991 * 109.46185 * 54.14760 * 20 4 2 39 39 H 1.09004 * 109.45136 * 294.17320 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.3779 -2.0049 1.3483 6 6 1.8003 -2.6328 2.6784 7 6 3.3238 -2.7828 2.7055 8 6 3.9678 -1.4088 2.5002 9 1 3.6853 -0.7478 3.3195 10 7 5.4294 -1.5522 2.4673 11 6 5.9905 -1.5370 3.8249 12 6 7.4883 -1.6866 3.7511 13 1 7.9747 -1.7829 2.7918 14 6 8.2376 -1.6996 4.9084 15 7 7.6454 -1.5808 6.0767 16 14 10.0942 -1.8843 4.8170 17 1 10.7211 -0.5415 4.7209 18 1 10.5838 -2.5730 6.0381 19 1 10.4536 -2.6851 3.6192 20 6 3.4827 -0.8164 1.1752 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.6767 1.9563 0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 0.2949 -1.8836 1.3315 29 1 1.6833 -2.6536 0.5272 30 1 1.4831 -1.9914 3.5006 31 1 1.3356 -3.6134 2.7817 32 1 3.6379 -3.4552 1.9072 33 1 3.6327 -3.1896 3.6685 34 1 5.8502 -0.8364 1.8942 35 1 5.7428 -0.5929 4.3099 36 1 5.5712 -2.3622 4.4006 37 1 8.1725 -1.5903 6.8909 38 1 3.9282 0.1681 1.0328 39 1 3.7779 -1.4708 0.3549 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259887447.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:30 Heat of formation + Delta-G solvation = -9.477684 kcal Electronic energy + Delta-G solvation = -16209.829779 eV Core-core repulsion = 13765.568252 eV Total energy + Delta-G solvation = -2444.261528 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.27549 -35.91165 -33.73883 -32.25408 -30.54527 -29.27456 -27.24871 -25.62141 -24.00826 -22.09318 -21.40008 -19.88829 -19.33557 -16.55563 -16.21934 -15.02606 -14.77969 -14.50610 -14.47531 -13.83062 -13.42913 -13.35610 -12.83527 -12.66679 -12.28007 -12.14851 -11.82728 -11.65782 -11.54408 -11.18120 -11.07655 -10.92063 -10.71885 -10.69060 -10.34277 -10.13779 -9.97190 -9.66530 -9.10265 -8.45331 -8.17219 -7.25324 -6.00068 -4.01926 3.33565 3.39479 3.44172 3.89742 4.46002 4.83039 4.90276 5.01433 5.24167 5.28728 5.33986 5.35672 5.42503 5.53546 5.58694 5.65079 5.73447 5.76280 5.77816 5.90924 5.95853 6.05165 6.17736 6.18410 6.26458 6.36561 6.41891 6.70582 6.82720 7.19588 7.25758 7.36735 7.47836 7.82919 8.17715 8.44744 8.66239 9.07649 9.62830 11.11057 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.046103 B = 0.005321 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.185224 B = 5260.807363 C = 5605.725765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 C -0.145 4.145 4 N -0.533 5.533 5 C 0.053 3.947 6 C -0.117 4.117 7 C -0.107 4.107 8 C 0.091 3.909 9 H 0.043 0.957 10 N -0.687 5.687 11 C 0.196 3.804 12 C -0.514 4.514 13 H 0.061 0.939 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.056 3.944 21 H 0.064 0.936 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.036 0.964 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.029 0.971 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.327 0.673 35 H -0.014 1.014 36 H 0.028 0.972 37 H 0.261 0.739 38 H 0.072 0.928 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.736 2.191 -10.862 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 C -0.203 4.203 4 N -0.259 5.259 5 C -0.074 4.074 6 C -0.155 4.155 7 C -0.145 4.145 8 C -0.020 4.020 9 H 0.061 0.939 10 N -0.318 5.318 11 C 0.070 3.930 12 C -0.552 4.552 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.072 4.072 21 H 0.083 0.917 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.054 0.946 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.144 0.856 35 H 0.004 0.996 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -13.837 1.789 -10.293 17.338 hybrid contribution 1.199 0.342 -0.344 1.294 sum -12.638 2.132 -10.637 16.655 Atomic orbital electron populations 1.21956 0.94664 1.01892 1.02073 1.21575 0.95274 0.95238 0.91127 1.21864 1.01366 0.95218 1.01818 1.61951 1.06022 1.19879 1.38052 1.22175 0.98910 0.89021 0.97330 1.21600 0.96898 0.99846 0.97154 1.21554 0.93042 0.97498 1.02397 1.21413 0.90072 0.95355 0.95147 0.93923 1.60712 1.01282 1.52978 1.16780 1.19575 0.94508 0.95492 0.83463 1.21204 0.91601 1.49570 0.92874 0.92031 1.24986 0.98845 0.95411 0.95317 1.69965 1.35637 1.50708 0.97437 0.86496 0.85273 0.78116 0.77507 1.20749 1.21252 1.19802 1.22283 0.86814 1.00220 0.97855 0.91738 0.92462 0.92450 0.94559 0.91784 0.92412 0.92577 0.90667 0.95278 0.91416 0.91842 0.92110 0.91641 0.85622 0.99616 0.95364 0.92945 0.90964 0.94507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.65 37.16 0.32 -1.08 16 2 C 0.08 0.87 2.69 -67.72 -0.18 0.69 16 3 C -0.15 -1.56 9.10 37.16 0.34 -1.22 16 4 N -0.53 -7.33 4.52 -226.70 -1.03 -8.36 16 5 C 0.05 0.68 5.00 -3.83 -0.02 0.66 16 6 C -0.12 -1.62 6.09 -26.65 -0.16 -1.78 16 7 C -0.11 -1.84 5.49 -26.61 -0.15 -1.99 16 8 C 0.09 1.69 2.66 -67.63 -0.18 1.52 16 9 H 0.04 0.88 7.80 -51.93 -0.41 0.48 16 10 N -0.69 -15.10 6.30 -107.90 -0.68 -15.78 16 11 C 0.20 5.26 5.24 -4.97 -0.03 5.24 16 12 C -0.51 -14.81 9.32 -34.44 -0.32 -15.13 16 13 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 16 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.06 0.88 4.55 -3.83 -0.02 0.86 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.52 6.19 -51.93 -0.32 0.20 16 24 H 0.04 0.42 8.13 -51.93 -0.42 0.00 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.66 6.41 -51.92 -0.33 0.33 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.83 5.83 -51.93 -0.30 0.53 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.25 7.54 -51.92 -0.39 0.86 16 34 H 0.33 6.86 8.35 -39.29 -0.33 6.53 16 35 H -0.01 -0.40 8.06 -51.93 -0.42 -0.82 16 36 H 0.03 0.81 7.50 -51.93 -0.39 0.43 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.07 1.10 6.17 -51.93 -0.32 0.78 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 300.59 15.07 4.53 4.53 Total: -1.00 -29.99 300.59 -8.93 -38.92 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.98 Total: 0.99 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -0.49 Total: -10.73 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.97 Total: -50.63 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.99 -8.93 -38.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887447.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.445 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds