Wall clock time and date at job start Mon Mar 30 2020 03:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47016 * 2 1 4 4 N 1.46900 * 109.47156 * 119.99626 * 2 1 3 5 5 C 1.46849 * 110.99793 * 50.79011 * 4 2 1 6 6 C 1.53035 * 109.52263 * 185.83832 * 5 4 2 7 7 C 1.53113 * 109.27818 * 300.81877 * 6 5 4 8 8 C 1.53121 * 109.15937 * 57.65834 * 7 6 5 9 9 H 1.08998 * 109.53394 * 62.30530 * 8 7 6 10 10 N 1.46906 * 109.50389 * 182.40344 * 8 7 6 11 11 C 1.46902 * 110.99573 * 274.80109 * 10 8 7 12 12 C 1.50707 * 109.46656 * 179.97438 * 11 10 8 13 13 H 1.07995 * 120.00358 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99768 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00203 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00034 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47118 * 89.99770 * 16 14 12 18 18 H 1.48500 * 109.47037 * 209.99864 * 16 14 12 19 19 H 1.48500 * 109.47075 * 330.00240 * 16 14 12 20 20 C 1.46847 * 110.99979 * 174.99938 * 4 2 1 21 21 H 1.09000 * 109.47166 * 300.00367 * 1 2 3 22 22 H 1.09004 * 109.46851 * 60.00151 * 1 2 3 23 23 H 1.09004 * 109.47119 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47166 * 239.99633 * 2 1 3 25 25 H 1.08996 * 109.47668 * 60.00268 * 3 2 1 26 26 H 1.09008 * 109.46973 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47188 * 299.99643 * 3 2 1 28 28 H 1.08996 * 109.46612 * 305.85967 * 5 4 2 29 29 H 1.09004 * 109.46179 * 65.82364 * 5 4 2 30 30 H 1.08991 * 109.50463 * 60.76330 * 6 5 4 31 31 H 1.09006 * 109.50156 * 180.84042 * 6 5 4 32 32 H 1.08999 * 109.52656 * 297.75118 * 7 6 5 33 33 H 1.09010 * 109.52218 * 177.55990 * 7 6 5 34 34 H 1.00896 * 111.00309 * 150.84521 * 10 8 7 35 35 H 1.08990 * 109.47358 * 299.99539 * 11 10 8 36 36 H 1.09004 * 109.47457 * 60.00221 * 11 10 8 37 37 H 0.96997 * 120.00560 * 179.97438 * 15 14 12 38 38 H 1.08991 * 109.46185 * 54.14760 * 20 4 2 39 39 H 1.09004 * 109.45136 * 294.17320 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.3779 -2.0049 1.3483 6 6 1.8003 -2.6328 2.6784 7 6 3.3238 -2.7828 2.7055 8 6 3.9678 -1.4088 2.5002 9 1 3.6853 -0.7478 3.3195 10 7 5.4294 -1.5522 2.4673 11 6 5.9905 -1.5370 3.8249 12 6 7.4883 -1.6866 3.7511 13 1 7.9747 -1.7829 2.7918 14 6 8.2376 -1.6996 4.9084 15 7 7.6454 -1.5808 6.0767 16 14 10.0942 -1.8843 4.8170 17 1 10.7211 -0.5415 4.7209 18 1 10.5838 -2.5730 6.0381 19 1 10.4536 -2.6851 3.6192 20 6 3.4827 -0.8164 1.1752 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.6767 1.9563 0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 0.2949 -1.8836 1.3315 29 1 1.6833 -2.6536 0.5272 30 1 1.4831 -1.9914 3.5006 31 1 1.3356 -3.6134 2.7817 32 1 3.6379 -3.4552 1.9072 33 1 3.6327 -3.1896 3.6685 34 1 5.8502 -0.8364 1.8942 35 1 5.7428 -0.5929 4.3099 36 1 5.5712 -2.3622 4.4006 37 1 8.1725 -1.5903 6.8909 38 1 3.9282 0.1681 1.0328 39 1 3.7779 -1.4708 0.3549 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259887447.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:29 Heat of formation + Delta-G solvation = -30.390380 kcal Electronic energy + Delta-G solvation = -16210.736622 eV Core-core repulsion = 13765.568252 eV Total energy + Delta-G solvation = -2445.168370 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.47180 -37.39287 -35.35890 -34.12446 -31.68676 -30.78446 -28.47258 -27.29011 -25.30998 -23.76434 -22.96325 -20.98594 -20.66870 -18.59297 -17.41274 -16.79312 -16.21251 -16.00182 -15.80701 -15.20767 -14.75280 -14.65806 -14.22245 -14.10334 -13.76034 -13.59211 -13.19028 -12.93186 -12.76263 -12.60137 -12.48496 -12.28767 -12.13787 -12.08310 -11.99712 -11.62255 -11.38046 -11.15962 -11.08283 -10.66854 -9.25077 -9.16356 -8.23216 -6.35109 1.40582 1.42748 1.54617 2.39246 2.81233 3.09944 3.59214 3.80489 3.91197 4.07794 4.16283 4.16811 4.34307 4.43346 4.44773 4.55813 4.67413 4.75789 4.82457 4.86782 4.95157 4.98732 5.01148 5.06631 5.11783 5.13071 5.25811 5.27647 5.34118 5.38839 5.45934 5.62250 6.00284 6.13581 6.24283 6.44301 6.71500 6.88044 7.36090 8.88681 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.046103 B = 0.005321 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.185224 B = 5260.807363 C = 5605.725765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 C -0.144 4.144 4 N -0.544 5.544 5 C 0.055 3.945 6 C -0.110 4.110 7 C -0.104 4.104 8 C 0.090 3.910 9 H 0.018 0.982 10 N -0.683 5.683 11 C 0.214 3.786 12 C -0.537 4.537 13 H 0.065 0.935 14 C 0.001 3.999 15 N -0.935 5.935 16 Si 0.976 3.024 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.264 1.264 20 C 0.070 3.930 21 H 0.059 0.941 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.039 0.961 25 H 0.055 0.945 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.034 0.966 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.036 0.964 34 H 0.333 0.667 35 H -0.044 1.044 36 H -0.001 1.001 37 H 0.265 0.735 38 H 0.073 0.927 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.165 2.169 -12.563 19.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.035 4.035 3 C -0.201 4.201 4 N -0.270 5.270 5 C -0.072 4.072 6 C -0.148 4.148 7 C -0.142 4.142 8 C -0.021 4.021 9 H 0.036 0.964 10 N -0.314 5.314 11 C 0.086 3.914 12 C -0.575 4.575 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.800 3.200 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.188 1.188 20 C -0.058 4.058 21 H 0.078 0.922 22 H 0.094 0.906 23 H 0.082 0.918 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.118 0.882 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.151 0.849 35 H -0.027 1.027 36 H 0.017 0.983 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.290 1.773 -12.020 18.757 hybrid contribution 1.268 0.362 0.189 1.332 sum -13.022 2.135 -11.831 17.723 Atomic orbital electron populations 1.21927 0.92783 1.02575 1.02788 1.21707 0.96738 0.95055 0.89964 1.21866 1.00635 0.95134 1.02504 1.61951 1.04552 1.20735 1.39793 1.22224 1.00216 0.88455 0.96340 1.21569 0.93994 1.01271 0.97965 1.21520 0.95768 0.96266 1.00689 1.21486 0.88001 0.96146 0.96436 0.96420 1.60616 1.03454 1.53283 1.14042 1.19179 0.94229 0.92648 0.85305 1.21553 0.92554 1.50098 0.93328 0.91666 1.25986 1.04490 0.94543 0.94705 1.70102 1.37897 1.51204 0.98310 0.85292 0.78323 0.78575 0.77849 1.19581 1.20643 1.18821 1.22027 0.88526 0.99887 0.95383 0.92205 0.90605 0.91758 0.94311 0.92568 0.93558 0.90422 0.88171 0.94795 0.92199 0.89486 0.92089 0.94542 0.84925 1.02653 0.98305 0.92583 0.90830 0.94422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.65 71.98 0.62 -1.64 16 2 C 0.07 1.50 2.69 44.91 0.12 1.62 16 3 C -0.14 -2.84 9.10 71.98 0.66 -2.19 16 4 N -0.54 -14.17 4.52 -871.13 -3.94 -18.11 16 5 C 0.05 1.28 5.00 86.32 0.43 1.71 16 6 C -0.11 -2.94 6.09 30.64 0.19 -2.75 16 7 C -0.10 -3.67 5.49 30.67 0.17 -3.50 16 8 C 0.09 3.45 2.66 44.97 0.12 3.56 16 9 H 0.02 0.77 7.80 -2.39 -0.02 0.75 16 10 N -0.68 -31.01 6.30 -495.28 -3.12 -34.13 16 11 C 0.21 12.04 5.24 85.56 0.45 12.49 16 12 C -0.54 -31.57 9.32 25.60 0.24 -31.33 16 13 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 14 C 0.00 0.05 5.46 84.65 0.46 0.51 16 15 N -0.94 -57.89 13.29 21.45 0.28 -57.61 16 16 Si 0.98 45.03 29.54 68.60 2.03 47.05 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 20 C 0.07 2.15 4.55 86.33 0.39 2.55 16 21 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 23 H 0.06 0.93 6.19 -2.38 -0.01 0.92 16 24 H 0.04 0.80 8.13 -2.39 -0.02 0.78 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.05 1.01 6.41 -2.38 -0.02 0.99 16 27 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.10 1.88 5.83 -2.39 -0.01 1.86 16 29 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.04 1.46 7.54 -2.38 -0.02 1.44 16 34 H 0.33 14.27 8.35 -89.70 -0.75 13.52 16 35 H -0.04 -2.69 8.06 -2.39 -0.02 -2.71 16 36 H 0.00 -0.07 7.50 -2.38 -0.02 -0.09 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 38 H 0.07 2.23 6.17 -2.39 -0.01 2.21 16 39 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -65.52 300.59 -0.65 -66.17 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.25 Total: 15.60 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 3.85 Total: -18.97 kcal Atomic # 7 Polarization: -103.08 SS G_CDS: -6.78 Total: -109.86 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -65.52 -0.65 -66.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887447.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.784 kcal (2) G-P(sol) polarization free energy of solvation -65.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds