Wall clock time and date at job start Mon Mar 30 2020 03:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47528 * 2 1 4 4 N 1.46898 * 109.47476 * 120.00300 * 2 1 3 5 5 C 1.47479 * 111.00321 * 164.52475 * 4 2 1 6 6 C 1.53513 * 87.93351 * 221.29510 * 5 4 2 7 7 C 1.47487 * 111.00039 * 68.55272 * 4 2 1 8 8 H 1.09000 * 113.47249 * 23.93904 * 7 4 2 9 9 C 1.52999 * 113.47397 * 253.47146 * 7 4 2 10 10 N 1.46902 * 109.47020 * 176.12788 * 9 7 4 11 11 C 1.46903 * 111.00116 * 287.87646 * 10 9 7 12 12 C 1.46895 * 111.00384 * 163.92190 * 10 9 7 13 13 C 1.50696 * 109.47296 * 190.00066 * 12 10 9 14 14 H 1.07995 * 120.00389 * 0.02562 * 13 12 10 15 15 C 1.37882 * 119.99977 * 179.97438 * 13 12 10 16 16 N 1.31510 * 119.99944 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00084 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47112 * 89.99340 * 17 15 13 19 19 H 1.48495 * 109.47071 * 209.99837 * 17 15 13 20 20 H 1.48507 * 109.46669 * 329.99627 * 17 15 13 21 21 H 1.08995 * 109.47236 * 60.00039 * 1 2 3 22 22 H 1.09006 * 109.47234 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47076 * 299.99378 * 1 2 3 24 24 H 1.09003 * 109.47091 * 240.00095 * 2 1 3 25 25 H 1.08999 * 109.47471 * 185.07471 * 3 2 1 26 26 H 1.08995 * 109.46836 * 305.07784 * 3 2 1 27 27 H 1.09001 * 109.46516 * 65.06830 * 3 2 1 28 28 H 1.09001 * 113.47984 * 336.06128 * 5 4 2 29 29 H 1.09003 * 113.47914 * 106.46867 * 5 4 2 30 30 H 1.08998 * 114.17463 * 272.37400 * 6 5 4 31 31 H 1.09001 * 114.16911 * 139.66615 * 6 5 4 32 32 H 1.09000 * 109.47553 * 296.12553 * 9 7 4 33 33 H 1.08996 * 109.47001 * 56.13298 * 9 7 4 34 34 H 1.09003 * 109.47141 * 65.00898 * 11 10 9 35 35 H 1.08998 * 109.47166 * 185.01134 * 11 10 9 36 36 H 1.08992 * 109.47073 * 305.01475 * 11 10 9 37 37 H 1.09001 * 109.46727 * 310.00146 * 12 10 9 38 38 H 1.09002 * 109.47061 * 69.99782 * 12 10 9 39 39 H 0.96998 * 120.00179 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4469 -1.0387 1.0641 6 6 3.1220 -2.3939 1.7079 7 6 1.7213 -2.1355 1.1354 8 1 1.5921 -2.5075 0.1190 9 6 0.5909 -2.5661 2.0723 10 7 0.3054 -3.9931 1.8715 11 6 -0.3728 -4.2187 0.5880 12 6 -0.4839 -4.5340 2.9861 13 6 -0.5484 -6.0354 2.8737 14 1 -0.0524 -6.5376 2.0564 15 6 -1.2399 -6.7681 3.8151 16 7 -1.2958 -8.0784 3.7173 17 14 -2.0972 -5.8996 5.2293 18 1 -3.4879 -5.5621 4.8328 19 1 -2.1235 -6.7925 6.4156 20 1 -1.3617 -4.6536 5.5638 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1262 1.4438 -0.0909 26 1 1.6044 1.9818 -0.8410 27 1 1.7527 1.9293 0.9319 28 1 3.7783 -1.1181 0.0288 29 1 4.1043 -0.4153 1.6703 30 1 3.1663 -2.3928 2.7970 31 1 3.6403 -3.2389 1.2547 32 1 0.8920 -2.3980 3.1063 33 1 -0.3035 -1.9825 1.8548 34 1 0.2987 -3.9549 -0.2291 35 1 -0.6519 -5.2690 0.5043 36 1 -1.2683 -3.5996 0.5365 37 1 -0.0137 -4.2602 3.9306 38 1 -1.4928 -4.1232 2.9499 39 1 -1.7825 -8.5938 4.3794 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260004518.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:56 Heat of formation + Delta-G solvation = 37.019896 kcal Electronic energy + Delta-G solvation = -16342.646449 eV Core-core repulsion = 13900.401207 eV Total energy + Delta-G solvation = -2442.245241 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.33604 -36.42136 -34.13414 -32.44219 -29.17365 -27.55463 -27.26831 -26.75859 -24.73156 -22.24132 -20.84061 -19.98701 -19.40951 -16.82077 -16.27945 -15.22531 -15.00010 -14.50690 -14.20567 -14.03181 -13.77912 -12.97703 -12.79050 -12.44833 -12.38126 -12.21647 -12.06202 -11.75480 -11.62161 -11.18370 -10.99941 -10.92863 -10.82920 -10.74832 -10.56113 -10.10091 -10.01581 -9.74059 -9.24455 -8.79310 -8.55581 -7.32843 -6.03233 -4.00166 3.30182 3.37822 3.40844 3.92959 4.44328 4.65047 4.82313 4.86117 4.96199 5.10794 5.23730 5.30414 5.35150 5.43263 5.55565 5.60405 5.71784 5.75890 5.79423 5.90778 5.98431 6.04628 6.10030 6.14287 6.14839 6.27304 6.34184 6.39168 6.55396 6.72314 6.89106 7.02886 7.22775 7.63395 7.94235 8.09681 8.68784 9.05328 9.58907 11.09934 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.042330 B = 0.005926 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.302965 B = 4724.085433 C = 4828.430083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 C -0.139 4.139 4 N -0.468 5.468 5 C -0.004 4.004 6 C -0.129 4.129 7 C 0.040 3.960 8 H 0.076 0.924 9 C 0.071 3.929 10 N -0.529 5.529 11 C 0.035 3.965 12 C 0.163 3.837 13 C -0.508 4.508 14 H 0.081 0.919 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.875 3.125 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.267 1.267 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.026 0.974 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.009 0.991 37 H 0.028 0.972 38 H -0.018 1.018 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.284 16.218 -6.946 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.067 4.067 3 C -0.197 4.197 4 N -0.191 5.191 5 C -0.133 4.133 6 C -0.167 4.167 7 C -0.069 4.069 8 H 0.094 0.906 9 C -0.058 4.058 10 N -0.253 5.253 11 C -0.113 4.113 12 C 0.037 3.963 13 C -0.546 4.546 14 H 0.099 0.901 15 C -0.133 4.133 16 N -0.541 5.541 17 Si 0.702 3.298 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.191 1.191 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.027 0.973 37 H 0.046 0.954 38 H 0.000 1.000 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.394 16.251 -6.330 18.575 hybrid contribution -1.114 0.385 -0.013 1.178 sum 5.280 16.636 -6.343 18.571 Atomic orbital electron populations 1.21843 0.94248 1.02398 1.01820 1.22170 0.96317 0.95865 0.92364 1.21745 1.00567 0.95317 1.02068 1.68933 1.05366 1.10502 1.34345 1.23722 0.92043 0.97497 1.00018 1.23103 0.95908 0.96096 1.01593 1.23320 0.96368 0.87823 0.99386 0.90630 1.21971 0.95611 0.89411 0.98790 1.61816 1.47774 1.12389 1.03370 1.22292 0.95137 1.02695 0.91222 1.20181 0.90225 0.96516 0.89401 1.21047 1.32519 0.88956 1.12090 0.90125 1.24893 0.96105 0.94710 0.97622 1.69892 1.42848 1.05183 1.36131 0.86868 0.80322 0.79995 0.82606 1.20405 1.21156 1.19144 0.92569 0.92297 0.91920 0.93837 0.93020 0.92547 0.91856 0.91931 0.90149 0.88941 0.90588 0.90986 0.95557 0.93660 0.90025 0.97259 0.95368 0.99997 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.86 37.15 0.33 -1.37 16 2 C 0.04 0.49 2.27 -67.72 -0.15 0.33 16 3 C -0.14 -1.36 9.26 37.16 0.34 -1.02 16 4 N -0.47 -6.20 5.92 -228.49 -1.35 -7.55 16 5 C 0.00 -0.04 7.15 -7.54 -0.05 -0.10 16 6 C -0.13 -1.76 8.00 -26.20 -0.21 -1.97 16 7 C 0.04 0.60 2.26 -71.43 -0.16 0.44 16 8 H 0.08 1.14 6.35 -51.93 -0.33 0.81 16 9 C 0.07 1.27 4.93 -3.82 -0.02 1.25 16 10 N -0.53 -11.19 4.71 -244.38 -1.15 -12.34 16 11 C 0.04 0.68 9.25 60.07 0.56 1.24 16 12 C 0.16 4.03 3.78 -4.98 -0.02 4.01 16 13 C -0.51 -14.53 8.94 -34.44 -0.31 -14.84 16 14 H 0.08 2.50 7.41 -52.49 -0.39 2.11 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 17 Si 0.87 21.75 27.47 -169.99 -4.67 17.08 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.77 6.47 -51.93 -0.34 0.44 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.04 0.50 7.56 -51.93 -0.39 0.11 16 25 H 0.05 0.48 7.85 -51.93 -0.41 0.07 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.66 7.68 -51.93 -0.40 0.27 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.31 7.95 -51.93 -0.41 0.90 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.33 7.56 -51.93 -0.39 0.94 16 33 H 0.03 0.47 6.64 -51.93 -0.35 0.12 16 34 H 0.04 0.76 6.77 -51.93 -0.35 0.41 16 35 H 0.08 1.76 6.66 -51.93 -0.35 1.42 16 36 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 37 H 0.03 0.71 6.92 -51.93 -0.36 0.35 16 38 H -0.02 -0.44 7.55 -51.93 -0.39 -0.83 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 301.50 15.07 4.54 4.54 Total: -1.00 -29.96 301.50 -8.62 -38.58 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -6.97 Total: -3.20 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 0.21 Total: -10.15 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -1.73 Total: -46.86 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.96 -8.62 -38.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004518.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.598 kcal (2) G-P(sol) polarization free energy of solvation -29.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds