Wall clock time and date at job start Mon Mar 30 2020 03:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46794 * 2 1 4 4 N 1.46905 * 109.46906 * 119.99782 * 2 1 3 5 5 C 1.47845 * 110.99745 * 40.36259 * 4 2 1 6 6 C 1.54913 * 104.79224 * 146.36201 * 5 4 2 7 7 C 1.55134 * 101.65420 * 322.93188 * 6 5 4 8 8 C 1.47440 * 110.99928 * 161.20567 * 4 2 1 9 9 H 1.09001 * 109.88689 * 117.33657 * 8 4 2 10 10 C 1.52998 * 109.88918 * 356.15068 * 8 4 2 11 11 N 1.46502 * 109.47266 * 173.45248 * 10 8 4 12 12 C 1.46493 * 120.00138 * 94.25442 * 11 10 8 13 13 C 1.36939 * 119.99391 * 274.25104 * 11 10 8 14 14 H 1.07997 * 120.00524 * 24.42444 * 13 11 10 15 15 C 1.38816 * 119.99556 * 204.41694 * 13 11 10 16 16 N 1.31625 * 119.99914 * 9.79122 * 15 13 11 17 17 Si 1.86800 * 120.00029 * 189.78758 * 15 13 11 18 18 H 1.48504 * 109.46913 * 89.99995 * 17 15 13 19 19 H 1.48500 * 109.47057 * 210.00094 * 17 15 13 20 20 H 1.48500 * 109.47175 * 330.00551 * 17 15 13 21 21 H 1.09001 * 109.46562 * 178.97413 * 1 2 3 22 22 H 1.08993 * 109.47444 * 298.97780 * 1 2 3 23 23 H 1.08997 * 109.47037 * 58.98005 * 1 2 3 24 24 H 1.08994 * 109.47159 * 239.99572 * 2 1 3 25 25 H 1.09002 * 109.46795 * 164.77605 * 3 2 1 26 26 H 1.08998 * 109.47191 * 284.77615 * 3 2 1 27 27 H 1.08996 * 109.46985 * 44.77978 * 3 2 1 28 28 H 1.09001 * 110.37358 * 265.18799 * 5 4 2 29 29 H 1.09000 * 110.37557 * 27.42699 * 5 4 2 30 30 H 1.09000 * 110.99113 * 81.02194 * 6 5 4 31 31 H 1.08995 * 110.98919 * 204.79767 * 6 5 4 32 32 H 1.09002 * 110.70393 * 277.27197 * 7 6 5 33 33 H 1.09004 * 110.70873 * 154.03769 * 7 6 5 34 34 H 1.09002 * 109.46898 * 293.45388 * 10 8 4 35 35 H 1.09003 * 109.47295 * 53.44972 * 10 8 4 36 36 H 1.08997 * 109.47609 * 94.45713 * 12 11 10 37 37 H 1.09005 * 109.47029 * 214.46021 * 12 11 10 38 38 H 1.09006 * 109.47051 * 334.45709 * 12 11 10 39 39 H 0.96999 * 119.99541 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.2047 -1.8916 1.4887 6 6 2.2023 -2.9118 2.0919 7 6 3.4786 -2.6346 1.2547 8 6 3.4244 -1.1085 1.0331 9 1 4.0501 -0.6043 1.7696 10 6 3.9034 -0.7703 -0.3801 11 7 5.3390 -1.0424 -0.4873 12 6 5.8035 -2.3339 -0.9993 13 6 6.2464 -0.0892 -0.1090 14 1 5.9665 0.6689 0.6075 15 6 7.5264 -0.0975 -0.6463 16 7 7.8116 -0.8936 -1.6549 17 14 8.8439 1.0214 0.0620 18 1 9.5642 0.3112 1.1493 19 1 9.8046 1.3935 -1.0075 20 1 8.2104 2.2487 0.6074 21 1 -0.3632 -1.0275 -0.0184 22 1 -0.3634 0.4978 0.8989 23 1 -0.3633 0.5296 -0.8807 24 1 1.8934 -0.5139 -0.8899 25 1 3.0960 1.4545 0.2699 26 1 1.9140 1.8724 -0.9937 27 1 1.4733 2.0281 0.7238 28 1 0.4225 -1.6540 2.2098 29 1 0.7672 -2.2836 0.5706 30 1 2.3769 -2.7092 3.1486 31 1 1.8524 -3.9336 1.9451 32 1 3.4374 -3.1640 0.3027 33 1 4.3732 -2.9116 1.8125 34 1 3.3628 -1.3815 -1.1029 35 1 3.7171 0.2840 -0.5844 36 1 5.9949 -2.2531 -2.0693 37 1 6.7221 -2.6189 -0.4863 38 1 5.0391 -3.0908 -0.8231 39 1 8.7058 -0.8991 -2.0306 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260199731.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:06 Heat of formation + Delta-G solvation = 37.962124 kcal Electronic energy + Delta-G solvation = -17012.364587 eV Core-core repulsion = 14570.160203 eV Total energy + Delta-G solvation = -2442.204383 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.53797 -35.26189 -34.08601 -31.56752 -29.37621 -28.68402 -26.57964 -25.93582 -24.83851 -21.72707 -21.19221 -20.47429 -18.27537 -16.56710 -16.21998 -15.46494 -14.73558 -14.30039 -13.77517 -13.43469 -13.25039 -13.05336 -12.49999 -12.08192 -11.97763 -11.84169 -11.63875 -11.11910 -11.06012 -10.83596 -10.80690 -10.70924 -10.62649 -10.47454 -10.40216 -10.14253 -9.97278 -9.79202 -9.57817 -8.49842 -7.83425 -6.59923 -5.66171 -3.14192 3.41383 3.47586 3.49021 4.29712 4.56918 5.02084 5.10456 5.23993 5.31101 5.40457 5.47451 5.61704 5.68236 5.71963 5.87236 5.92446 5.97526 6.04240 6.06295 6.13890 6.19616 6.27921 6.31429 6.40772 6.51919 6.59103 6.61122 6.83395 6.88367 7.06842 7.42210 7.50589 7.59114 7.78672 7.86510 8.47178 9.30631 9.93675 10.43602 11.38228 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032460 B = 0.008095 C = 0.007329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.385593 B = 3458.053642 C = 3819.470163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 C -0.144 4.144 4 N -0.522 5.522 5 C 0.044 3.956 6 C -0.133 4.133 7 C -0.124 4.124 8 C 0.051 3.949 9 H 0.084 0.916 10 C 0.129 3.871 11 N -0.599 5.599 12 C 0.164 3.836 13 C -0.249 4.249 14 H 0.067 0.933 15 C 0.001 3.999 16 N -0.910 5.910 17 Si 0.904 3.096 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.279 1.279 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.066 0.934 36 H 0.027 0.973 37 H 0.041 0.959 38 H -0.004 1.004 39 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.758 -1.617 4.053 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.047 4.047 3 C -0.201 4.201 4 N -0.248 5.248 5 C -0.084 4.084 6 C -0.172 4.172 7 C -0.162 4.162 8 C -0.060 4.060 9 H 0.102 0.898 10 C 0.002 3.998 11 N -0.322 5.322 12 C 0.019 3.981 13 C -0.379 4.379 14 H 0.085 0.915 15 C -0.197 4.197 16 N -0.556 5.556 17 Si 0.734 3.266 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.205 1.205 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.045 0.955 37 H 0.059 0.941 38 H 0.014 0.986 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.627 -1.275 4.344 13.414 hybrid contribution 0.915 -0.058 -0.331 0.975 sum -11.712 -1.333 4.013 12.452 Atomic orbital electron populations 1.22039 0.95491 1.01500 1.01778 1.21863 0.94136 0.95925 0.92806 1.21960 1.02551 0.94817 1.00790 1.63879 1.02656 1.22962 1.35283 1.23007 0.96326 0.90216 0.98880 1.22741 0.96193 0.98174 1.00042 1.22745 0.97244 0.96747 0.99475 1.23178 0.87731 0.94028 1.01015 0.89834 1.21608 0.85948 0.99797 0.92491 1.43820 0.99384 1.13337 1.75670 1.20828 0.95070 0.83955 0.98254 1.19174 0.92449 1.07900 1.18386 0.91529 1.25065 0.98892 0.99096 0.96654 1.70063 1.19942 1.41020 1.24553 0.86263 0.81860 0.80474 0.78018 1.21579 1.21801 1.20458 0.92781 0.92269 0.92590 0.92615 0.90776 0.92927 0.92900 0.91185 0.93923 0.91267 0.91731 0.91879 0.91187 0.94998 0.91624 0.95501 0.94071 0.98554 0.93870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.55 37.16 0.32 -1.50 16 2 C 0.06 0.91 2.22 -67.71 -0.15 0.76 16 3 C -0.14 -2.16 8.50 37.16 0.32 -1.84 16 4 N -0.52 -8.38 5.02 -215.44 -1.08 -9.46 16 5 C 0.04 0.60 5.36 -2.30 -0.01 0.59 16 6 C -0.13 -1.84 7.08 -24.59 -0.17 -2.01 16 7 C -0.12 -2.10 5.66 -24.91 -0.14 -2.24 16 8 C 0.05 0.94 3.32 -66.73 -0.22 0.72 16 9 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 10 C 0.13 2.71 3.50 -4.04 -0.01 2.70 16 11 N -0.60 -15.19 2.82 -181.12 -0.51 -15.70 16 12 C 0.16 4.10 8.63 59.84 0.52 4.62 16 13 C -0.25 -6.91 9.66 -15.06 -0.15 -7.06 16 14 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 15 C 0.00 0.02 5.16 -17.43 -0.09 -0.07 16 16 N -0.91 -26.94 10.63 55.49 0.59 -26.35 16 17 Si 0.90 22.20 29.56 -169.99 -5.03 17.17 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H 0.05 0.61 6.12 -51.93 -0.32 0.30 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.91 5.44 -51.93 -0.28 0.63 16 25 H 0.07 1.30 5.97 -51.93 -0.31 0.99 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.73 8.05 -51.93 -0.42 0.31 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.57 6.45 -51.93 -0.33 0.23 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.11 6.33 -51.93 -0.33 0.78 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.03 0.66 6.70 -51.93 -0.35 0.31 16 35 H 0.07 1.40 4.18 -51.93 -0.22 1.18 16 36 H 0.03 0.73 7.36 -51.93 -0.38 0.35 16 37 H 0.04 1.11 7.31 -51.93 -0.38 0.73 16 38 H 0.00 -0.09 6.18 -51.93 -0.32 -0.41 16 39 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 288.37 15.07 4.35 4.35 Total: -1.00 -29.14 288.37 -8.05 -37.19 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -6.57 Total: -1.87 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 0.20 Total: -5.33 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -1.00 Total: -51.51 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.14 -8.05 -37.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260199731.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.156 kcal (2) G-P(sol) polarization free energy of solvation -29.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds