Wall clock time and date at job start Mon Mar 30 2020 03:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46794 * 2 1 4 4 N 1.46905 * 109.46906 * 119.99782 * 2 1 3 5 5 C 1.47845 * 110.99745 * 40.36259 * 4 2 1 6 6 C 1.54913 * 104.79224 * 146.36201 * 5 4 2 7 7 C 1.55134 * 101.65420 * 322.93188 * 6 5 4 8 8 C 1.47440 * 110.99928 * 161.20567 * 4 2 1 9 9 H 1.09001 * 109.88689 * 117.33657 * 8 4 2 10 10 C 1.52998 * 109.88918 * 356.15068 * 8 4 2 11 11 N 1.46502 * 109.47266 * 173.45248 * 10 8 4 12 12 C 1.46493 * 120.00138 * 94.25442 * 11 10 8 13 13 C 1.36939 * 119.99391 * 274.25104 * 11 10 8 14 14 H 1.07997 * 120.00524 * 24.42444 * 13 11 10 15 15 C 1.38816 * 119.99556 * 204.41694 * 13 11 10 16 16 N 1.31625 * 119.99914 * 9.79122 * 15 13 11 17 17 Si 1.86800 * 120.00029 * 189.78758 * 15 13 11 18 18 H 1.48504 * 109.46913 * 89.99995 * 17 15 13 19 19 H 1.48500 * 109.47057 * 210.00094 * 17 15 13 20 20 H 1.48500 * 109.47175 * 330.00551 * 17 15 13 21 21 H 1.09001 * 109.46562 * 178.97413 * 1 2 3 22 22 H 1.08993 * 109.47444 * 298.97780 * 1 2 3 23 23 H 1.08997 * 109.47037 * 58.98005 * 1 2 3 24 24 H 1.08994 * 109.47159 * 239.99572 * 2 1 3 25 25 H 1.09002 * 109.46795 * 164.77605 * 3 2 1 26 26 H 1.08998 * 109.47191 * 284.77615 * 3 2 1 27 27 H 1.08996 * 109.46985 * 44.77978 * 3 2 1 28 28 H 1.09001 * 110.37358 * 265.18799 * 5 4 2 29 29 H 1.09000 * 110.37557 * 27.42699 * 5 4 2 30 30 H 1.09000 * 110.99113 * 81.02194 * 6 5 4 31 31 H 1.08995 * 110.98919 * 204.79767 * 6 5 4 32 32 H 1.09002 * 110.70393 * 277.27197 * 7 6 5 33 33 H 1.09004 * 110.70873 * 154.03769 * 7 6 5 34 34 H 1.09002 * 109.46898 * 293.45388 * 10 8 4 35 35 H 1.09003 * 109.47295 * 53.44972 * 10 8 4 36 36 H 1.08997 * 109.47609 * 94.45713 * 12 11 10 37 37 H 1.09005 * 109.47029 * 214.46021 * 12 11 10 38 38 H 1.09006 * 109.47051 * 334.45709 * 12 11 10 39 39 H 0.96999 * 119.99541 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.2047 -1.8916 1.4887 6 6 2.2023 -2.9118 2.0919 7 6 3.4786 -2.6346 1.2547 8 6 3.4244 -1.1085 1.0331 9 1 4.0501 -0.6043 1.7696 10 6 3.9034 -0.7703 -0.3801 11 7 5.3390 -1.0424 -0.4873 12 6 5.8035 -2.3339 -0.9993 13 6 6.2464 -0.0892 -0.1090 14 1 5.9665 0.6689 0.6075 15 6 7.5264 -0.0975 -0.6463 16 7 7.8116 -0.8936 -1.6549 17 14 8.8439 1.0214 0.0620 18 1 9.5642 0.3112 1.1493 19 1 9.8046 1.3935 -1.0075 20 1 8.2104 2.2487 0.6074 21 1 -0.3632 -1.0275 -0.0184 22 1 -0.3634 0.4978 0.8989 23 1 -0.3633 0.5296 -0.8807 24 1 1.8934 -0.5139 -0.8899 25 1 3.0960 1.4545 0.2699 26 1 1.9140 1.8724 -0.9937 27 1 1.4733 2.0281 0.7238 28 1 0.4225 -1.6540 2.2098 29 1 0.7672 -2.2836 0.5706 30 1 2.3769 -2.7092 3.1486 31 1 1.8524 -3.9336 1.9451 32 1 3.4374 -3.1640 0.3027 33 1 4.3732 -2.9116 1.8125 34 1 3.3628 -1.3815 -1.1029 35 1 3.7171 0.2840 -0.5844 36 1 5.9949 -2.2531 -2.0693 37 1 6.7221 -2.6189 -0.4863 38 1 5.0391 -3.0908 -0.8231 39 1 8.7058 -0.8991 -2.0306 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260199731.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:06 Heat of formation + Delta-G solvation = 19.742134 kcal Electronic energy + Delta-G solvation = -17013.154665 eV Core-core repulsion = 14570.160203 eV Total energy + Delta-G solvation = -2442.994461 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.87951 -37.17578 -35.28769 -33.51329 -30.95440 -29.96076 -28.02065 -27.70221 -26.55650 -23.14896 -22.92271 -21.72768 -19.71398 -18.57290 -17.61579 -16.89618 -16.47790 -15.85634 -15.12330 -15.08139 -14.93165 -14.57359 -13.98322 -13.69025 -13.27488 -13.00710 -12.98334 -12.93004 -12.78457 -12.51583 -12.35919 -12.14950 -12.10182 -11.96870 -11.82054 -11.69293 -11.66717 -11.46302 -11.22502 -10.62272 -9.22294 -8.60668 -7.81518 -5.32263 1.45036 1.45900 1.55044 2.49577 3.05629 3.30758 3.73842 3.84222 3.91280 4.05169 4.15966 4.24983 4.38724 4.48947 4.57918 4.58921 4.71076 4.81370 4.86518 4.91609 5.00314 5.03403 5.03950 5.07876 5.13534 5.21460 5.28853 5.30633 5.39206 5.47147 5.56006 5.62200 5.69157 6.18997 6.33414 6.36108 7.16304 7.87843 8.32403 9.20830 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032460 B = 0.008095 C = 0.007329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.385593 B = 3458.053642 C = 3819.470163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.058 3.942 3 C -0.140 4.140 4 N -0.527 5.527 5 C 0.043 3.957 6 C -0.123 4.123 7 C -0.124 4.124 8 C 0.062 3.938 9 H 0.052 0.948 10 C 0.133 3.867 11 N -0.614 5.614 12 C 0.181 3.819 13 C -0.255 4.255 14 H 0.065 0.935 15 C -0.054 4.054 16 N -0.941 5.941 17 Si 0.967 3.033 18 H -0.286 1.286 19 H -0.293 1.293 20 H -0.269 1.269 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.040 0.960 25 H 0.041 0.959 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.037 0.963 35 H 0.061 0.939 36 H 0.000 1.000 37 H 0.014 0.986 38 H 0.028 0.972 39 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.752 -1.608 4.956 15.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.050 4.050 3 C -0.197 4.197 4 N -0.253 5.253 5 C -0.084 4.084 6 C -0.161 4.161 7 C -0.163 4.163 8 C -0.048 4.048 9 H 0.070 0.930 10 C 0.007 3.993 11 N -0.338 5.338 12 C 0.036 3.964 13 C -0.386 4.386 14 H 0.083 0.917 15 C -0.248 4.248 16 N -0.588 5.588 17 Si 0.796 3.204 18 H -0.213 1.213 19 H -0.220 1.220 20 H -0.194 1.194 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.018 0.982 37 H 0.033 0.967 38 H 0.046 0.954 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.667 -1.261 5.267 15.634 hybrid contribution 1.455 -0.050 -0.610 1.578 sum -13.212 -1.311 4.656 14.070 Atomic orbital electron populations 1.21967 0.92660 1.02564 1.02745 1.21922 0.96376 0.95190 0.91556 1.21912 1.00552 0.95614 1.01668 1.63853 1.01393 1.24198 1.35841 1.23133 0.96292 0.89095 0.99871 1.22721 0.94116 0.99692 0.99539 1.22679 0.98601 0.95283 0.99714 1.22781 0.89175 0.94967 0.97913 0.92971 1.21711 0.83593 0.99701 0.94279 1.44039 1.01004 1.13081 1.75664 1.20542 0.94932 0.84850 0.96099 1.19423 0.93188 1.07981 1.17962 0.91737 1.25818 1.00927 1.00848 0.97248 1.70228 1.20042 1.42648 1.25869 0.85259 0.79082 0.78984 0.77109 1.21322 1.21982 1.19388 0.91680 0.91675 0.91262 0.94217 0.94024 0.91981 0.91629 0.89081 0.92896 0.90880 0.89275 0.92415 0.92719 0.94458 0.92089 0.98189 0.96696 0.95411 0.94329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.55 71.98 0.62 -2.33 16 2 C 0.06 1.62 2.22 44.92 0.10 1.72 16 3 C -0.14 -4.07 8.50 71.98 0.61 -3.46 16 4 N -0.53 -15.99 5.02 -835.51 -4.20 -20.19 16 5 C 0.04 1.04 5.36 86.78 0.47 1.51 16 6 C -0.12 -3.03 7.08 31.98 0.23 -2.80 16 7 C -0.12 -4.09 5.66 31.77 0.18 -3.91 16 8 C 0.06 2.30 3.32 45.26 0.15 2.45 16 9 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 10 C 0.13 5.64 3.50 86.38 0.30 5.95 16 11 N -0.61 -31.77 2.82 -726.93 -2.05 -33.82 16 12 C 0.18 9.26 8.63 127.77 1.10 10.36 16 13 C -0.26 -14.43 9.66 84.03 0.81 -13.62 16 14 H 0.06 3.60 7.85 -2.91 -0.02 3.58 16 15 C -0.05 -3.09 5.16 84.86 0.44 -2.65 16 16 N -0.94 -57.03 10.63 21.65 0.23 -56.80 16 17 Si 0.97 46.29 29.56 68.60 2.03 48.31 16 18 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 19 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 H 0.06 1.22 6.12 -2.39 -0.01 1.20 16 22 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 23 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.04 1.25 5.44 -2.39 -0.01 1.23 16 25 H 0.04 1.48 5.97 -2.39 -0.01 1.46 16 26 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 1.71 8.05 -2.39 -0.02 1.69 16 28 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.20 6.45 -2.39 -0.02 1.18 16 30 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.95 6.33 -2.39 -0.02 1.93 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.04 1.53 6.70 -2.39 -0.02 1.51 16 35 H 0.06 2.64 4.18 -2.39 -0.01 2.63 16 36 H 0.00 -0.01 7.36 -2.39 -0.02 -0.03 16 37 H 0.01 0.80 7.31 -2.38 -0.02 0.78 16 38 H 0.03 1.21 6.18 -2.38 -0.01 1.20 16 39 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -63.15 288.37 2.02 -61.13 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 1.00 Total: 8.15 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 5.00 Total: -6.78 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -6.02 Total: -110.81 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -63.15 2.02 -61.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260199731.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.875 kcal (2) G-P(sol) polarization free energy of solvation -63.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds