Wall clock time and date at job start Mon Mar 30 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47089 * 2 1 4 4 N 1.46897 * 109.47011 * 120.00246 * 2 1 3 5 5 C 1.47850 * 111.00035 * 54.15692 * 4 2 1 6 6 C 1.54901 * 104.79666 * 146.36237 * 5 4 2 7 7 C 1.55139 * 101.65257 * 322.92862 * 6 5 4 8 8 H 1.09004 * 110.85768 * 277.19936 * 7 6 5 9 9 C 1.53009 * 110.70616 * 154.03870 * 7 6 5 10 10 N 1.46498 * 109.47304 * 71.39771 * 9 7 6 11 11 C 1.46499 * 119.99881 * 90.00240 * 10 9 7 12 12 C 1.36935 * 119.99812 * 270.00410 * 10 9 7 13 13 H 1.08004 * 119.99900 * 141.77063 * 12 10 9 14 14 C 1.38815 * 119.99951 * 321.76224 * 12 10 9 15 15 N 1.31619 * 119.99445 * 157.40142 * 14 12 10 16 16 Si 1.86789 * 120.00017 * 337.39695 * 14 12 10 17 17 H 1.48508 * 109.46983 * 95.66817 * 16 14 12 18 18 H 1.48496 * 109.47214 * 215.66428 * 16 14 12 19 19 H 1.48500 * 109.47731 * 335.66578 * 16 14 12 20 20 C 1.47442 * 110.99856 * 174.99451 * 4 2 1 21 21 H 1.08997 * 109.46978 * 300.00068 * 1 2 3 22 22 H 1.09001 * 109.47129 * 59.99841 * 1 2 3 23 23 H 1.08998 * 109.47617 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46484 * 239.99790 * 2 1 3 25 25 H 1.09005 * 109.46643 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47265 * 300.00076 * 3 2 1 27 27 H 1.08996 * 109.46958 * 60.00553 * 3 2 1 28 28 H 1.08998 * 110.37250 * 265.19079 * 5 4 2 29 29 H 1.08997 * 110.37691 * 27.41876 * 5 4 2 30 30 H 1.09001 * 110.98900 * 204.83655 * 6 5 4 31 31 H 1.08997 * 110.99087 * 81.01881 * 6 5 4 32 32 H 1.08999 * 109.46827 * 311.39605 * 9 7 6 33 33 H 1.09001 * 109.46890 * 191.40073 * 9 7 6 34 34 H 1.08994 * 109.47163 * 85.67796 * 11 10 9 35 35 H 1.09000 * 109.46896 * 205.68363 * 11 10 9 36 36 H 1.09005 * 109.47294 * 325.67828 * 11 10 9 37 37 H 0.97002 * 119.99469 * 180.02562 * 15 14 12 38 38 H 1.09004 * 109.88432 * 117.33659 * 20 4 2 39 39 H 1.08998 * 110.02491 * 356.22803 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4342 -2.0460 1.3058 6 6 2.5463 -2.9083 1.9533 7 6 3.8222 -2.3188 1.2965 8 1 3.9902 -2.7572 0.3127 9 6 5.0414 -2.5311 2.1963 10 7 5.4063 -3.9499 2.1976 11 6 6.3552 -4.4630 1.2063 12 6 4.8605 -4.7964 3.1253 13 1 4.5876 -5.8027 2.8436 14 6 4.6582 -4.3612 4.4279 15 7 3.7657 -4.9573 5.1897 16 14 5.6527 -2.9297 5.0994 17 1 4.8749 -1.6735 4.9502 18 1 5.9468 -3.1621 6.5363 19 1 6.9271 -2.8153 4.3456 20 6 3.4886 -0.8171 1.1749 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8901 25 1 3.1301 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9562 0.8900 28 1 0.5494 -2.0278 1.9421 29 1 1.1819 -2.4292 0.3171 30 1 2.4247 -3.9603 1.6953 31 1 2.5657 -2.7727 3.0346 32 1 4.8023 -2.2165 3.2122 33 1 5.8774 -1.9412 1.8206 34 1 7.3729 -4.3192 1.5691 35 1 6.1734 -5.5257 1.0455 36 1 6.2251 -3.9259 0.2668 37 1 3.6241 -4.6530 6.0998 38 1 3.9209 -0.2720 2.0141 39 1 3.8809 -0.4248 0.2367 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260202909.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:56 Heat of formation + Delta-G solvation = 22.654282 kcal Electronic energy + Delta-G solvation = -16812.610609 eV Core-core repulsion = 14369.742427 eV Total energy + Delta-G solvation = -2442.868181 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.09080 -36.09255 -33.75374 -31.56196 -29.67807 -28.89591 -26.88465 -26.17956 -24.70008 -21.70455 -21.05313 -19.86291 -19.39837 -16.79649 -16.04433 -15.25721 -15.06762 -14.13148 -13.86397 -13.54451 -13.24745 -13.06848 -12.64455 -12.51593 -12.13666 -12.00899 -11.98545 -11.79085 -11.42905 -11.02858 -10.88977 -10.77283 -10.73119 -10.49469 -10.35767 -10.14592 -9.97937 -9.61436 -9.44356 -8.45647 -7.97526 -6.74136 -5.95686 -3.35794 3.36200 3.50451 3.55989 4.23486 4.57191 4.92086 5.04515 5.08169 5.24874 5.39923 5.46930 5.49842 5.64446 5.66701 5.74372 5.84530 5.86964 5.93829 6.01846 6.07377 6.20608 6.26826 6.28063 6.32022 6.39660 6.49894 6.56977 6.72854 6.74062 6.82385 7.00863 7.21186 7.36526 7.47210 8.10620 8.41546 9.03722 9.76290 10.18572 11.19899 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031984 B = 0.008163 C = 0.007882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.236121 B = 3429.228399 C = 3551.611810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.071 3.929 3 C -0.143 4.143 4 N -0.526 5.526 5 C 0.040 3.960 6 C -0.097 4.097 7 C -0.121 4.121 8 H 0.063 0.937 9 C 0.149 3.851 10 N -0.612 5.612 11 C 0.125 3.875 12 C -0.265 4.265 13 H 0.076 0.924 14 C 0.040 3.960 15 N -0.898 5.898 16 Si 0.872 3.128 17 H -0.283 1.283 18 H -0.302 1.302 19 H -0.272 1.272 20 C 0.046 3.954 21 H 0.062 0.938 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.036 0.964 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.035 0.965 34 H 0.005 0.995 35 H 0.044 0.956 36 H 0.024 0.976 37 H 0.262 0.738 38 H 0.071 0.929 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.270 9.664 -10.252 14.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.038 4.038 3 C -0.200 4.200 4 N -0.251 5.251 5 C -0.087 4.087 6 C -0.135 4.135 7 C -0.143 4.143 8 H 0.081 0.919 9 C 0.023 3.977 10 N -0.336 5.336 11 C -0.020 4.020 12 C -0.393 4.393 13 H 0.093 0.907 14 C -0.161 4.161 15 N -0.539 5.539 16 Si 0.702 3.298 17 H -0.211 1.211 18 H -0.230 1.230 19 H -0.197 1.197 20 C -0.082 4.082 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.055 0.945 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.023 0.977 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.483 9.927 -9.678 14.295 hybrid contribution 0.764 0.342 -0.232 0.869 sum -2.718 10.269 -9.910 14.527 Atomic orbital electron populations 1.21879 0.94682 1.02017 1.01718 1.21761 0.95435 0.95151 0.91471 1.21847 1.01052 0.95508 1.01613 1.63666 1.06197 1.18321 1.36937 1.23121 0.98828 0.87816 0.98975 1.22499 0.91469 0.98681 1.00879 1.22936 0.98361 0.93219 0.99775 0.91862 1.21127 0.93062 0.85871 0.97626 1.44039 1.48822 1.04956 1.35783 1.21057 0.91827 0.97920 0.91198 1.18711 1.35456 0.97026 0.88128 0.90657 1.25420 0.97262 0.97397 0.95999 1.69874 1.31804 1.43184 1.09080 0.87006 0.82400 0.82941 0.77466 1.21086 1.23014 1.19669 1.22865 0.87723 0.97292 1.00348 0.91911 0.92719 0.92537 0.94644 0.92720 0.92770 0.91933 0.90932 0.94456 0.90550 0.90317 0.92549 0.94654 0.97712 0.93767 0.95721 0.92803 0.91020 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.97 37.16 0.33 -1.35 16 2 C 0.07 0.93 2.24 -67.71 -0.15 0.78 16 3 C -0.14 -1.65 9.15 37.16 0.34 -1.31 16 4 N -0.53 -8.50 5.03 -223.30 -1.12 -9.62 16 5 C 0.04 0.67 5.33 -2.30 -0.01 0.66 16 6 C -0.10 -1.97 5.73 -24.60 -0.14 -2.11 16 7 C -0.12 -2.31 3.17 -88.80 -0.28 -2.60 16 8 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 9 C 0.15 3.26 3.90 -4.04 -0.02 3.24 16 10 N -0.61 -14.65 2.44 -181.11 -0.44 -15.09 16 11 C 0.13 2.55 10.70 59.85 0.64 3.19 16 12 C -0.26 -7.31 9.12 -15.06 -0.14 -7.45 16 13 H 0.08 2.26 8.06 -52.48 -0.42 1.83 16 14 C 0.04 1.14 5.29 -17.43 -0.09 1.04 16 15 N -0.90 -27.03 13.97 55.49 0.78 -26.25 16 16 Si 0.87 22.45 25.09 -169.99 -4.26 18.18 16 17 H -0.28 -7.12 6.68 56.52 0.38 -6.74 16 18 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 19 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 20 C 0.05 0.77 5.76 -2.84 -0.02 0.75 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.67 6.74 -51.93 -0.35 0.32 16 24 H 0.04 0.48 8.10 -51.92 -0.42 0.06 16 25 H 0.05 0.64 6.81 -51.93 -0.35 0.29 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.04 0.58 7.32 -51.93 -0.38 0.20 16 30 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 31 H 0.08 1.85 7.94 -51.93 -0.41 1.44 16 32 H 0.06 1.36 3.24 -51.93 -0.17 1.19 16 33 H 0.04 0.70 8.07 -51.93 -0.42 0.29 16 34 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 35 H 0.04 0.88 8.00 -51.93 -0.42 0.46 16 36 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.07 1.25 7.82 -51.93 -0.41 0.85 16 39 H 0.05 0.70 6.67 -51.93 -0.35 0.35 16 LS Contribution 297.13 15.07 4.48 4.48 Total: -1.00 -29.29 297.13 -7.17 -36.46 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -7.06 Total: -2.99 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 0.47 Total: -5.15 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.79 Total: -50.97 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.26 Total: 18.18 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.29 -7.17 -36.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260202909.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.110 kcal (2) G-P(sol) polarization free energy of solvation -29.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds