Wall clock time and date at job start Mon Mar 30 2020 03:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47089 * 2 1 4 4 N 1.46897 * 109.47011 * 120.00246 * 2 1 3 5 5 C 1.47850 * 111.00035 * 54.15692 * 4 2 1 6 6 C 1.54901 * 104.79666 * 146.36237 * 5 4 2 7 7 C 1.55139 * 101.65257 * 322.92862 * 6 5 4 8 8 H 1.09004 * 110.85768 * 277.19936 * 7 6 5 9 9 C 1.53009 * 110.70616 * 154.03870 * 7 6 5 10 10 N 1.46498 * 109.47304 * 71.39771 * 9 7 6 11 11 C 1.46499 * 119.99881 * 90.00240 * 10 9 7 12 12 C 1.36935 * 119.99812 * 270.00410 * 10 9 7 13 13 H 1.08004 * 119.99900 * 141.77063 * 12 10 9 14 14 C 1.38815 * 119.99951 * 321.76224 * 12 10 9 15 15 N 1.31619 * 119.99445 * 157.40142 * 14 12 10 16 16 Si 1.86789 * 120.00017 * 337.39695 * 14 12 10 17 17 H 1.48508 * 109.46983 * 95.66817 * 16 14 12 18 18 H 1.48496 * 109.47214 * 215.66428 * 16 14 12 19 19 H 1.48500 * 109.47731 * 335.66578 * 16 14 12 20 20 C 1.47442 * 110.99856 * 174.99451 * 4 2 1 21 21 H 1.08997 * 109.46978 * 300.00068 * 1 2 3 22 22 H 1.09001 * 109.47129 * 59.99841 * 1 2 3 23 23 H 1.08998 * 109.47617 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46484 * 239.99790 * 2 1 3 25 25 H 1.09005 * 109.46643 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47265 * 300.00076 * 3 2 1 27 27 H 1.08996 * 109.46958 * 60.00553 * 3 2 1 28 28 H 1.08998 * 110.37250 * 265.19079 * 5 4 2 29 29 H 1.08997 * 110.37691 * 27.41876 * 5 4 2 30 30 H 1.09001 * 110.98900 * 204.83655 * 6 5 4 31 31 H 1.08997 * 110.99087 * 81.01881 * 6 5 4 32 32 H 1.08999 * 109.46827 * 311.39605 * 9 7 6 33 33 H 1.09001 * 109.46890 * 191.40073 * 9 7 6 34 34 H 1.08994 * 109.47163 * 85.67796 * 11 10 9 35 35 H 1.09000 * 109.46896 * 205.68363 * 11 10 9 36 36 H 1.09005 * 109.47294 * 325.67828 * 11 10 9 37 37 H 0.97002 * 119.99469 * 180.02562 * 15 14 12 38 38 H 1.09004 * 109.88432 * 117.33659 * 20 4 2 39 39 H 1.08998 * 110.02491 * 356.22803 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4342 -2.0460 1.3058 6 6 2.5463 -2.9083 1.9533 7 6 3.8222 -2.3188 1.2965 8 1 3.9902 -2.7572 0.3127 9 6 5.0414 -2.5311 2.1963 10 7 5.4063 -3.9499 2.1976 11 6 6.3552 -4.4630 1.2063 12 6 4.8605 -4.7964 3.1253 13 1 4.5876 -5.8027 2.8436 14 6 4.6582 -4.3612 4.4279 15 7 3.7657 -4.9573 5.1897 16 14 5.6527 -2.9297 5.0994 17 1 4.8749 -1.6735 4.9502 18 1 5.9468 -3.1621 6.5363 19 1 6.9271 -2.8153 4.3456 20 6 3.4886 -0.8171 1.1749 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8901 25 1 3.1301 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9562 0.8900 28 1 0.5494 -2.0278 1.9421 29 1 1.1819 -2.4292 0.3171 30 1 2.4247 -3.9603 1.6953 31 1 2.5657 -2.7727 3.0346 32 1 4.8023 -2.2165 3.2122 33 1 5.8774 -1.9412 1.8206 34 1 7.3729 -4.3192 1.5691 35 1 6.1734 -5.5257 1.0455 36 1 6.2251 -3.9259 0.2668 37 1 3.6241 -4.6530 6.0998 38 1 3.9209 -0.2720 2.0141 39 1 3.8809 -0.4248 0.2367 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260202909.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:55 Heat of formation + Delta-G solvation = 3.612000 kcal Electronic energy + Delta-G solvation = -16813.436344 eV Core-core repulsion = 14369.742427 eV Total energy + Delta-G solvation = -2443.693917 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.44805 -37.78479 -35.13213 -33.66069 -31.12423 -30.19380 -28.08462 -27.92395 -26.33487 -23.03660 -22.88894 -21.34884 -20.67463 -18.81075 -17.46274 -16.89739 -16.58632 -15.67549 -15.43112 -15.13797 -14.84756 -14.45268 -14.19789 -14.06424 -13.78122 -13.24334 -13.18664 -13.11274 -12.91298 -12.67957 -12.52120 -12.20706 -12.10524 -11.87593 -11.79050 -11.71102 -11.62917 -11.56556 -11.20844 -10.60433 -9.22202 -8.70785 -8.17397 -5.53649 1.30380 1.39259 1.49573 2.43349 3.02104 3.06784 3.41911 3.82190 3.86820 4.06900 4.15119 4.20994 4.37780 4.46388 4.48836 4.57801 4.69437 4.74296 4.78823 4.83699 4.87251 4.96424 4.98081 5.02757 5.04469 5.11608 5.14011 5.20004 5.33857 5.37719 5.42542 5.53621 5.97201 6.05026 6.18817 6.29629 7.02354 7.66598 8.09633 9.02176 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031984 B = 0.008163 C = 0.007882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.236121 B = 3429.228399 C = 3551.611810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.066 3.934 3 C -0.139 4.139 4 N -0.538 5.538 5 C 0.054 3.946 6 C -0.096 4.096 7 C -0.114 4.114 8 H 0.073 0.927 9 C 0.145 3.855 10 N -0.626 5.626 11 C 0.123 3.877 12 C -0.249 4.249 13 H 0.039 0.961 14 C -0.009 4.009 15 N -0.943 5.943 16 Si 0.930 3.070 17 H -0.277 1.277 18 H -0.309 1.309 19 H -0.263 1.263 20 C 0.054 3.946 21 H 0.056 0.944 22 H 0.077 0.923 23 H 0.050 0.950 24 H 0.040 0.960 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.062 0.938 34 H 0.013 0.987 35 H 0.040 0.960 36 H 0.057 0.943 37 H 0.260 0.740 38 H 0.063 0.937 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.765 11.911 -12.370 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.042 4.042 3 C -0.196 4.196 4 N -0.263 5.263 5 C -0.074 4.074 6 C -0.134 4.134 7 C -0.135 4.135 8 H 0.091 0.909 9 C 0.019 3.981 10 N -0.350 5.350 11 C -0.021 4.021 12 C -0.378 4.378 13 H 0.057 0.943 14 C -0.206 4.206 15 N -0.587 5.587 16 Si 0.760 3.240 17 H -0.204 1.204 18 H -0.238 1.238 19 H -0.187 1.187 20 C -0.074 4.074 21 H 0.075 0.925 22 H 0.096 0.904 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.031 0.969 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.959 12.198 -11.834 17.251 hybrid contribution 0.579 -0.410 0.337 0.785 sum -2.380 11.788 -11.497 16.637 Atomic orbital electron populations 1.21865 0.93541 1.01979 1.02623 1.21930 0.96438 0.95741 0.90116 1.21826 1.00940 0.94370 1.02476 1.63664 1.05828 1.17685 1.39132 1.22946 0.97400 0.87741 0.99301 1.22310 0.94388 0.98066 0.98676 1.22810 0.96339 0.95194 0.99187 0.90910 1.21204 0.95091 0.84735 0.97051 1.44197 1.49695 1.05433 1.35702 1.21168 0.91230 0.98148 0.91547 1.18533 1.34245 0.96175 0.88892 0.94308 1.25908 0.98130 1.00133 0.96395 1.69988 1.33713 1.45565 1.09393 0.86050 0.81161 0.80533 0.76251 1.20381 1.23811 1.18727 1.22764 0.88265 0.95027 1.01355 0.92452 0.90403 0.93066 0.94250 0.92851 0.90468 0.92553 0.90934 0.92884 0.93130 0.94376 0.95023 0.91986 0.96852 0.94139 0.92482 0.93046 0.91830 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.97 71.98 0.65 -2.24 16 2 C 0.07 1.53 2.24 44.92 0.10 1.63 16 3 C -0.14 -2.72 9.15 71.98 0.66 -2.06 16 4 N -0.54 -16.20 5.03 -860.38 -4.33 -20.53 16 5 C 0.05 1.74 5.33 86.77 0.46 2.20 16 6 C -0.10 -3.94 5.73 31.98 0.18 -3.75 16 7 C -0.11 -4.16 3.17 -9.61 -0.03 -4.19 16 8 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 9 C 0.14 6.06 3.90 86.38 0.34 6.40 16 10 N -0.63 -29.39 2.44 -726.92 -1.77 -31.16 16 11 C 0.12 4.75 10.70 127.77 1.37 6.12 16 12 C -0.25 -14.02 9.12 84.03 0.77 -13.25 16 13 H 0.04 2.44 8.06 -2.91 -0.02 2.42 16 14 C -0.01 -0.51 5.29 84.86 0.45 -0.06 16 15 N -0.94 -58.84 13.97 21.65 0.30 -58.54 16 16 Si 0.93 47.01 25.09 68.60 1.72 48.73 16 17 H -0.28 -13.53 6.68 99.48 0.66 -12.86 16 18 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16 19 H -0.26 -12.76 7.11 99.48 0.71 -12.05 16 20 C 0.05 1.67 5.76 86.64 0.50 2.17 16 21 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.05 1.08 6.74 -2.39 -0.02 1.06 16 24 H 0.04 0.91 8.10 -2.38 -0.02 0.89 16 25 H 0.05 1.06 6.81 -2.38 -0.02 1.04 16 26 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.05 1.56 7.32 -2.39 -0.02 1.54 16 30 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.04 1.85 7.94 -2.39 -0.02 1.83 16 32 H 0.03 1.50 3.24 -2.39 -0.01 1.49 16 33 H 0.06 2.27 8.07 -2.39 -0.02 2.25 16 34 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.04 1.56 8.00 -2.39 -0.02 1.54 16 36 H 0.06 1.82 8.10 -2.38 -0.02 1.81 16 37 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 38 H 0.06 2.07 7.82 -2.39 -0.02 2.06 16 39 H 0.07 1.87 6.67 -2.39 -0.02 1.86 16 Total: -1.00 -64.04 297.13 2.30 -61.74 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 0.94 Total: 6.80 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 5.44 Total: -7.05 kcal Atomic # 7 Polarization: -104.42 SS G_CDS: -5.80 Total: -110.22 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.72 Total: 48.73 kcal Total: -64.04 2.30 -61.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260202909.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.351 kcal (2) G-P(sol) polarization free energy of solvation -64.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds