Wall clock time and date at job start Mon Mar 30 2020 03:15:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53004 * 109.47078 * 2 1
4 4 N 1.46897 * 109.47765 * 120.00037 * 2 1 3
5 5 C 1.46853 * 110.99644 * 56.04323 * 4 2 1
6 6 C 1.53040 * 109.51068 * 185.83941 * 5 4 2
7 7 C 1.53120 * 109.28144 * 300.82621 * 6 5 4
8 8 C 1.53122 * 109.15763 * 57.65767 * 7 6 5
9 9 C 1.50699 * 109.50520 * 62.32709 * 8 7 6
10 10 H 1.07997 * 119.99538 * 358.59480 * 9 8 7
11 11 C 1.37874 * 119.99995 * 178.60221 * 9 8 7
12 12 N 1.31511 * 119.99870 * 2.52903 * 11 9 8
13 13 Si 1.86802 * 119.99629 * 182.53767 * 11 9 8
14 14 H 1.48497 * 109.46975 * 89.99766 * 13 11 9
15 15 H 1.48509 * 109.46741 * 209.99719 * 13 11 9
16 16 H 1.48498 * 109.47073 * 329.99452 * 13 11 9
17 17 C 1.52997 * 109.50233 * 182.41047 * 8 7 6
18 18 N 1.46906 * 109.46734 * 294.62551 * 17 8 7
19 19 C 1.46814 * 110.99154 * 180.26185 * 4 2 1
20 20 H 1.08995 * 109.47007 * 299.99904 * 1 2 3
21 21 H 1.08999 * 109.47374 * 60.00570 * 1 2 3
22 22 H 1.09007 * 109.47030 * 180.02562 * 1 2 3
23 23 H 1.09003 * 109.47586 * 239.99943 * 2 1 3
24 24 H 1.08995 * 109.47387 * 180.02562 * 3 2 1
25 25 H 1.09007 * 109.46885 * 299.99833 * 3 2 1
26 26 H 1.08995 * 109.47123 * 60.00167 * 3 2 1
27 27 H 1.08998 * 109.46230 * 65.83172 * 5 4 2
28 28 H 1.09001 * 109.46420 * 305.84906 * 5 4 2
29 29 H 1.09000 * 109.50374 * 60.77104 * 6 5 4
30 30 H 1.09006 * 109.50187 * 180.84732 * 6 5 4
31 31 H 1.08998 * 109.52386 * 177.56505 * 7 6 5
32 32 H 1.09004 * 109.51939 * 297.75356 * 7 6 5
33 33 H 0.97003 * 119.99418 * 179.97438 * 12 11 9
34 34 H 1.08992 * 109.47424 * 54.62434 * 17 8 7
35 35 H 1.08993 * 109.47495 * 174.63133 * 17 8 7
36 36 H 1.00903 * 111.00206 * 56.04528 * 18 17 8
37 37 H 1.00898 * 110.99924 * 180.02562 * 18 17 8
38 38 H 1.09002 * 109.46699 * 54.14274 * 19 4 2
39 39 H 1.09004 * 109.46966 * 294.16958 * 19 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0198 -0.6925 1.1994
5 6 1.4732 -2.0530 1.2815
6 6 1.8857 -2.6902 2.6104
7 6 3.4138 -2.7273 2.7005
8 6 3.9601 -1.3034 2.5636
9 6 3.4543 -0.4586 3.7045
10 1 2.7898 -0.8869 4.4402
11 6 3.8399 0.8610 3.8089
12 7 4.6088 1.3963 2.8861
13 14 3.2702 1.8883 5.2614
14 1 4.2550 1.7716 6.3667
15 1 3.1565 3.3100 4.8477
16 1 1.9464 1.3999 5.7241
17 6 5.4894 -1.3380 2.5924
18 7 5.9440 -1.7948 3.9125
19 6 3.4874 -0.7064 1.2361
20 1 -0.3633 0.5138 0.8900
21 1 -0.3634 0.5137 -0.8900
22 1 -0.3633 -1.0277 0.0005
23 1 1.8934 -0.5138 -0.8900
24 1 3.1299 1.4426 -0.0005
25 1 1.6766 1.9564 -0.8901
26 1 1.6767 1.9563 0.8900
27 1 1.8609 -2.6505 0.4564
28 1 0.3857 -2.0119 1.2206
29 1 1.4867 -2.1008 3.4359
30 1 1.4927 -3.7054 2.6647
31 1 3.7120 -3.1408 3.6640
32 1 3.8110 -3.3486 1.8978
33 1 4.8798 2.3248 2.9594
34 1 5.8518 -2.0233 1.8262
35 1 5.8791 -0.3386 2.3997
36 1 5.5437 -2.6920 4.1424
37 1 6.9515 -1.8259 3.9571
38 1 3.8628 0.3126 1.1421
39 1 3.8657 -1.3102 0.4112
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260659376.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:15:04
Heat of formation + Delta-G solvation = 3.740767 kcal
Electronic energy + Delta-G solvation = -17560.361070 eV
Core-core repulsion = 15116.672737 eV
Total energy + Delta-G solvation = -2443.688333 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-38.67407 -35.52009 -32.84307 -31.74492 -29.65195 -29.18436 -26.70346 -24.62532
-23.76151 -22.58857 -20.65443 -19.08436 -18.46161 -15.64433 -15.52644 -14.76399
-14.42649 -14.06243 -13.67925 -13.09598 -13.01520 -12.81009 -12.35157 -12.20394
-12.01103 -11.58759 -11.25654 -11.12972 -10.83915 -10.67373 -10.58657 -10.44496
-10.34319 -10.06799 -9.98683 -9.62574 -9.17265 -8.77550 -8.57664 -8.06001
-7.30210 -7.09385 -5.66403 -3.63213 3.51913 3.56978 3.60806 4.72123
4.81451 5.52848 5.59791 5.63992 5.83161 5.84800 5.90275 5.97835
6.06958 6.14055 6.25922 6.35146 6.41121 6.47969 6.56964 6.58789
6.62131 6.69043 6.76840 6.84720 6.99175 7.09663 7.12479 7.22362
7.32598 7.73194 7.91042 8.19909 8.27242 8.34820 8.53151 8.61752
8.78665 9.23789 9.96211 11.39550
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.020953 B = 0.013853 C = 0.010740
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1335.977354 B = 2020.716963 C = 2606.347453
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.079 3.921
3 C -0.137 4.137
4 N -0.503 5.503
5 C 0.059 3.941
6 C -0.105 4.105
7 C -0.108 4.108
8 C 0.077 3.923
9 C -0.434 4.434
10 H 0.048 0.952
11 C 0.074 3.926
12 N -0.902 5.902
13 Si 0.885 3.115
14 H -0.288 1.288
15 H -0.295 1.295
16 H -0.281 1.281
17 C 0.078 3.922
18 N -0.823 5.823
19 C 0.068 3.932
20 H 0.062 0.938
21 H 0.047 0.953
22 H 0.050 0.950
23 H 0.019 0.981
24 H 0.064 0.936
25 H 0.039 0.961
26 H 0.063 0.937
27 H 0.009 0.991
28 H 0.061 0.939
29 H 0.077 0.923
30 H 0.038 0.962
31 H 0.050 0.950
32 H 0.024 0.976
33 H 0.252 0.748
34 H -0.030 1.030
35 H 0.100 0.900
36 H 0.319 0.681
37 H 0.313 0.687
38 H 0.116 0.884
39 H -0.022 1.022
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.487 -4.458 -4.789 7.414
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.030 4.030
3 C -0.194 4.194
4 N -0.227 5.227
5 C -0.069 4.069
6 C -0.143 4.143
7 C -0.146 4.146
8 C 0.076 3.924
9 C -0.473 4.473
10 H 0.066 0.934
11 C -0.124 4.124
12 N -0.544 5.544
13 Si 0.716 3.284
14 H -0.214 1.214
15 H -0.221 1.221
16 H -0.206 1.206
17 C -0.053 4.053
18 N -0.349 5.349
19 C -0.060 4.060
20 H 0.081 0.919
21 H 0.066 0.934
22 H 0.069 0.931
23 H 0.037 0.963
24 H 0.083 0.917
25 H 0.059 0.941
26 H 0.082 0.918
27 H 0.027 0.973
28 H 0.079 0.921
29 H 0.096 0.904
30 H 0.057 0.943
31 H 0.068 0.932
32 H 0.043 0.957
33 H 0.062 0.938
34 H -0.012 1.012
35 H 0.118 0.882
36 H 0.131 0.869
37 H 0.123 0.877
38 H 0.134 0.866
39 H -0.004 1.004
Dipole moment (debyes) X Y Z Total
from point charges -3.956 -3.357 -4.141 6.638
hybrid contribution 0.441 -0.724 -0.488 0.978
sum -3.515 -4.081 -4.628 7.101
Atomic orbital electron populations
1.21901 0.95727 1.01096 1.01386 1.21497 0.94457 0.95625 0.91382
1.21782 1.02086 0.94979 1.00595 1.61829 1.10282 1.14688 1.35946
1.22039 0.98534 0.89900 0.96409 1.21456 0.97009 0.97695 0.98124
1.21671 0.94971 0.99279 0.98671 1.18192 0.90342 0.89970 0.93935
1.20500 1.25430 0.94287 1.07043 0.93424 1.24581 0.95112 0.97438
0.95300 1.69670 1.37893 1.13010 1.33819 0.86719 0.78561 0.79373
0.83780 1.21441 1.22114 1.20628 1.21875 0.98312 0.99603 0.85539
1.58576 1.10158 1.33311 1.32882 1.22338 0.84550 1.03705 0.95373
0.91858 0.93354 0.93141 0.96295 0.91690 0.94149 0.91783 0.97330
0.92084 0.90407 0.94304 0.93165 0.95723 0.93826 1.01190 0.88244
0.86947 0.87684 0.86606 1.00422
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.23 8.85 37.16 0.33 -1.91 16
2 C 0.08 1.46 2.68 -67.71 -0.18 1.27 16
3 C -0.14 -2.54 8.96 37.16 0.33 -2.21 16
4 N -0.50 -10.61 4.13 -226.71 -0.94 -11.54 16
5 C 0.06 1.13 5.14 -3.83 -0.02 1.11 16
6 C -0.11 -2.03 5.83 -26.65 -0.16 -2.19 16
7 C -0.11 -2.24 4.46 -26.61 -0.12 -2.36 16
8 C 0.08 1.79 0.33 -155.58 -0.05 1.74 16
9 C -0.43 -11.33 6.42 -34.44 -0.22 -11.55 16
10 H 0.05 1.30 6.81 -52.49 -0.36 0.94 16
11 C 0.07 1.97 5.15 -17.82 -0.09 1.88 16
12 N -0.90 -24.36 9.43 55.43 0.52 -23.84 16
13 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16
14 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16
15 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16
16 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16
17 C 0.08 1.79 5.44 -3.82 -0.02 1.77 16
18 N -0.82 -17.32 9.04 -10.37 -0.09 -17.41 16
19 C 0.07 1.57 3.74 -3.85 -0.01 1.55 16
20 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16
21 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16
22 H 0.05 0.74 6.22 -51.93 -0.32 0.41 16
23 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16
24 H 0.06 1.32 6.27 -51.93 -0.33 1.00 16
25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16
26 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16
27 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16
28 H 0.06 1.05 5.91 -51.93 -0.31 0.75 16
29 H 0.08 1.65 6.80 -51.93 -0.35 1.30 16
30 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16
31 H 0.05 1.02 6.81 -51.93 -0.35 0.67 16
32 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16
33 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16
34 H -0.03 -0.66 8.14 -51.93 -0.42 -1.08 16
35 H 0.10 2.57 6.22 -51.93 -0.32 2.25 16
36 H 0.32 6.20 7.32 -39.29 -0.29 5.91 16
37 H 0.31 5.81 9.08 -39.29 -0.36 5.45 16
38 H 0.12 2.92 3.94 -51.93 -0.20 2.71 16
39 H -0.02 -0.51 8.14 -51.93 -0.42 -0.94 16
LS Contribution 285.57 15.07 4.30 4.30
Total: -1.00 -27.20 285.57 -7.99 -35.19
By element:
Atomic # 1 Polarization: 13.69 SS G_CDS: -6.55 Total: 7.13 kcal
Atomic # 6 Polarization: -10.67 SS G_CDS: -0.21 Total: -10.89 kcal
Atomic # 7 Polarization: -52.28 SS G_CDS: -0.51 Total: -52.79 kcal
Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -27.20 -7.99 -35.19 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260659376.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.930 kcal
(2) G-P(sol) polarization free energy of solvation -27.197 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.733 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.189 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.741 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds