Wall clock time and date at job start Mon Mar 30 2020 03:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47078 * 2 1 4 4 N 1.46897 * 109.47765 * 120.00037 * 2 1 3 5 5 C 1.46853 * 110.99644 * 56.04323 * 4 2 1 6 6 C 1.53040 * 109.51068 * 185.83941 * 5 4 2 7 7 C 1.53120 * 109.28144 * 300.82621 * 6 5 4 8 8 C 1.53122 * 109.15763 * 57.65767 * 7 6 5 9 9 C 1.50699 * 109.50520 * 62.32709 * 8 7 6 10 10 H 1.07997 * 119.99538 * 358.59480 * 9 8 7 11 11 C 1.37874 * 119.99995 * 178.60221 * 9 8 7 12 12 N 1.31511 * 119.99870 * 2.52903 * 11 9 8 13 13 Si 1.86802 * 119.99629 * 182.53767 * 11 9 8 14 14 H 1.48497 * 109.46975 * 89.99766 * 13 11 9 15 15 H 1.48509 * 109.46741 * 209.99719 * 13 11 9 16 16 H 1.48498 * 109.47073 * 329.99452 * 13 11 9 17 17 C 1.52997 * 109.50233 * 182.41047 * 8 7 6 18 18 N 1.46906 * 109.46734 * 294.62551 * 17 8 7 19 19 C 1.46814 * 110.99154 * 180.26185 * 4 2 1 20 20 H 1.08995 * 109.47007 * 299.99904 * 1 2 3 21 21 H 1.08999 * 109.47374 * 60.00570 * 1 2 3 22 22 H 1.09007 * 109.47030 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47586 * 239.99943 * 2 1 3 24 24 H 1.08995 * 109.47387 * 180.02562 * 3 2 1 25 25 H 1.09007 * 109.46885 * 299.99833 * 3 2 1 26 26 H 1.08995 * 109.47123 * 60.00167 * 3 2 1 27 27 H 1.08998 * 109.46230 * 65.83172 * 5 4 2 28 28 H 1.09001 * 109.46420 * 305.84906 * 5 4 2 29 29 H 1.09000 * 109.50374 * 60.77104 * 6 5 4 30 30 H 1.09006 * 109.50187 * 180.84732 * 6 5 4 31 31 H 1.08998 * 109.52386 * 177.56505 * 7 6 5 32 32 H 1.09004 * 109.51939 * 297.75356 * 7 6 5 33 33 H 0.97003 * 119.99418 * 179.97438 * 12 11 9 34 34 H 1.08992 * 109.47424 * 54.62434 * 17 8 7 35 35 H 1.08993 * 109.47495 * 174.63133 * 17 8 7 36 36 H 1.00903 * 111.00206 * 56.04528 * 18 17 8 37 37 H 1.00898 * 110.99924 * 180.02562 * 18 17 8 38 38 H 1.09002 * 109.46699 * 54.14274 * 19 4 2 39 39 H 1.09004 * 109.46966 * 294.16958 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.4732 -2.0530 1.2815 6 6 1.8857 -2.6902 2.6104 7 6 3.4138 -2.7273 2.7005 8 6 3.9601 -1.3034 2.5636 9 6 3.4543 -0.4586 3.7045 10 1 2.7898 -0.8869 4.4402 11 6 3.8399 0.8610 3.8089 12 7 4.6088 1.3963 2.8861 13 14 3.2702 1.8883 5.2614 14 1 4.2550 1.7716 6.3667 15 1 3.1565 3.3100 4.8477 16 1 1.9464 1.3999 5.7241 17 6 5.4894 -1.3380 2.5924 18 7 5.9440 -1.7948 3.9125 19 6 3.4874 -0.7064 1.2361 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8901 26 1 1.6767 1.9563 0.8900 27 1 1.8609 -2.6505 0.4564 28 1 0.3857 -2.0119 1.2206 29 1 1.4867 -2.1008 3.4359 30 1 1.4927 -3.7054 2.6647 31 1 3.7120 -3.1408 3.6640 32 1 3.8110 -3.3486 1.8978 33 1 4.8798 2.3248 2.9594 34 1 5.8518 -2.0233 1.8262 35 1 5.8791 -0.3386 2.3997 36 1 5.5437 -2.6920 4.1424 37 1 6.9515 -1.8259 3.9571 38 1 3.8628 0.3126 1.1421 39 1 3.8657 -1.3102 0.4112 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260659376.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:04 Heat of formation + Delta-G solvation = 3.740767 kcal Electronic energy + Delta-G solvation = -17560.361070 eV Core-core repulsion = 15116.672737 eV Total energy + Delta-G solvation = -2443.688333 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.67407 -35.52009 -32.84307 -31.74492 -29.65195 -29.18436 -26.70346 -24.62532 -23.76151 -22.58857 -20.65443 -19.08436 -18.46161 -15.64433 -15.52644 -14.76399 -14.42649 -14.06243 -13.67925 -13.09598 -13.01520 -12.81009 -12.35157 -12.20394 -12.01103 -11.58759 -11.25654 -11.12972 -10.83915 -10.67373 -10.58657 -10.44496 -10.34319 -10.06799 -9.98683 -9.62574 -9.17265 -8.77550 -8.57664 -8.06001 -7.30210 -7.09385 -5.66403 -3.63213 3.51913 3.56978 3.60806 4.72123 4.81451 5.52848 5.59791 5.63992 5.83161 5.84800 5.90275 5.97835 6.06958 6.14055 6.25922 6.35146 6.41121 6.47969 6.56964 6.58789 6.62131 6.69043 6.76840 6.84720 6.99175 7.09663 7.12479 7.22362 7.32598 7.73194 7.91042 8.19909 8.27242 8.34820 8.53151 8.61752 8.78665 9.23789 9.96211 11.39550 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020953 B = 0.013853 C = 0.010740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.977354 B = 2020.716963 C = 2606.347453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.079 3.921 3 C -0.137 4.137 4 N -0.503 5.503 5 C 0.059 3.941 6 C -0.105 4.105 7 C -0.108 4.108 8 C 0.077 3.923 9 C -0.434 4.434 10 H 0.048 0.952 11 C 0.074 3.926 12 N -0.902 5.902 13 Si 0.885 3.115 14 H -0.288 1.288 15 H -0.295 1.295 16 H -0.281 1.281 17 C 0.078 3.922 18 N -0.823 5.823 19 C 0.068 3.932 20 H 0.062 0.938 21 H 0.047 0.953 22 H 0.050 0.950 23 H 0.019 0.981 24 H 0.064 0.936 25 H 0.039 0.961 26 H 0.063 0.937 27 H 0.009 0.991 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.050 0.950 32 H 0.024 0.976 33 H 0.252 0.748 34 H -0.030 1.030 35 H 0.100 0.900 36 H 0.319 0.681 37 H 0.313 0.687 38 H 0.116 0.884 39 H -0.022 1.022 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.487 -4.458 -4.789 7.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.030 4.030 3 C -0.194 4.194 4 N -0.227 5.227 5 C -0.069 4.069 6 C -0.143 4.143 7 C -0.146 4.146 8 C 0.076 3.924 9 C -0.473 4.473 10 H 0.066 0.934 11 C -0.124 4.124 12 N -0.544 5.544 13 Si 0.716 3.284 14 H -0.214 1.214 15 H -0.221 1.221 16 H -0.206 1.206 17 C -0.053 4.053 18 N -0.349 5.349 19 C -0.060 4.060 20 H 0.081 0.919 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.037 0.963 24 H 0.083 0.917 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.027 0.973 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.062 0.938 34 H -0.012 1.012 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.134 0.866 39 H -0.004 1.004 Dipole moment (debyes) X Y Z Total from point charges -3.956 -3.357 -4.141 6.638 hybrid contribution 0.441 -0.724 -0.488 0.978 sum -3.515 -4.081 -4.628 7.101 Atomic orbital electron populations 1.21901 0.95727 1.01096 1.01386 1.21497 0.94457 0.95625 0.91382 1.21782 1.02086 0.94979 1.00595 1.61829 1.10282 1.14688 1.35946 1.22039 0.98534 0.89900 0.96409 1.21456 0.97009 0.97695 0.98124 1.21671 0.94971 0.99279 0.98671 1.18192 0.90342 0.89970 0.93935 1.20500 1.25430 0.94287 1.07043 0.93424 1.24581 0.95112 0.97438 0.95300 1.69670 1.37893 1.13010 1.33819 0.86719 0.78561 0.79373 0.83780 1.21441 1.22114 1.20628 1.21875 0.98312 0.99603 0.85539 1.58576 1.10158 1.33311 1.32882 1.22338 0.84550 1.03705 0.95373 0.91858 0.93354 0.93141 0.96295 0.91690 0.94149 0.91783 0.97330 0.92084 0.90407 0.94304 0.93165 0.95723 0.93826 1.01190 0.88244 0.86947 0.87684 0.86606 1.00422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.85 37.16 0.33 -1.91 16 2 C 0.08 1.46 2.68 -67.71 -0.18 1.27 16 3 C -0.14 -2.54 8.96 37.16 0.33 -2.21 16 4 N -0.50 -10.61 4.13 -226.71 -0.94 -11.54 16 5 C 0.06 1.13 5.14 -3.83 -0.02 1.11 16 6 C -0.11 -2.03 5.83 -26.65 -0.16 -2.19 16 7 C -0.11 -2.24 4.46 -26.61 -0.12 -2.36 16 8 C 0.08 1.79 0.33 -155.58 -0.05 1.74 16 9 C -0.43 -11.33 6.42 -34.44 -0.22 -11.55 16 10 H 0.05 1.30 6.81 -52.49 -0.36 0.94 16 11 C 0.07 1.97 5.15 -17.82 -0.09 1.88 16 12 N -0.90 -24.36 9.43 55.43 0.52 -23.84 16 13 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 15 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 16 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 17 C 0.08 1.79 5.44 -3.82 -0.02 1.77 16 18 N -0.82 -17.32 9.04 -10.37 -0.09 -17.41 16 19 C 0.07 1.57 3.74 -3.85 -0.01 1.55 16 20 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.74 6.22 -51.93 -0.32 0.41 16 23 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 1.32 6.27 -51.93 -0.33 1.00 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.06 1.05 5.91 -51.93 -0.31 0.75 16 29 H 0.08 1.65 6.80 -51.93 -0.35 1.30 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 1.02 6.81 -51.93 -0.35 0.67 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 34 H -0.03 -0.66 8.14 -51.93 -0.42 -1.08 16 35 H 0.10 2.57 6.22 -51.93 -0.32 2.25 16 36 H 0.32 6.20 7.32 -39.29 -0.29 5.91 16 37 H 0.31 5.81 9.08 -39.29 -0.36 5.45 16 38 H 0.12 2.92 3.94 -51.93 -0.20 2.71 16 39 H -0.02 -0.51 8.14 -51.93 -0.42 -0.94 16 LS Contribution 285.57 15.07 4.30 4.30 Total: -1.00 -27.20 285.57 -7.99 -35.19 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.55 Total: 7.13 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -0.21 Total: -10.89 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.51 Total: -52.79 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.20 -7.99 -35.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260659376.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.930 kcal (2) G-P(sol) polarization free energy of solvation -27.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds