Wall clock time and date at job start Mon Mar 30 2020 03:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47078 * 2 1 4 4 N 1.46897 * 109.47765 * 120.00037 * 2 1 3 5 5 C 1.46853 * 110.99644 * 56.04323 * 4 2 1 6 6 C 1.53040 * 109.51068 * 185.83941 * 5 4 2 7 7 C 1.53120 * 109.28144 * 300.82621 * 6 5 4 8 8 C 1.53122 * 109.15763 * 57.65767 * 7 6 5 9 9 C 1.50699 * 109.50520 * 62.32709 * 8 7 6 10 10 H 1.07997 * 119.99538 * 358.59480 * 9 8 7 11 11 C 1.37874 * 119.99995 * 178.60221 * 9 8 7 12 12 N 1.31511 * 119.99870 * 2.52903 * 11 9 8 13 13 Si 1.86802 * 119.99629 * 182.53767 * 11 9 8 14 14 H 1.48497 * 109.46975 * 89.99766 * 13 11 9 15 15 H 1.48509 * 109.46741 * 209.99719 * 13 11 9 16 16 H 1.48498 * 109.47073 * 329.99452 * 13 11 9 17 17 C 1.52997 * 109.50233 * 182.41047 * 8 7 6 18 18 N 1.46906 * 109.46734 * 294.62551 * 17 8 7 19 19 C 1.46814 * 110.99154 * 180.26185 * 4 2 1 20 20 H 1.08995 * 109.47007 * 299.99904 * 1 2 3 21 21 H 1.08999 * 109.47374 * 60.00570 * 1 2 3 22 22 H 1.09007 * 109.47030 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47586 * 239.99943 * 2 1 3 24 24 H 1.08995 * 109.47387 * 180.02562 * 3 2 1 25 25 H 1.09007 * 109.46885 * 299.99833 * 3 2 1 26 26 H 1.08995 * 109.47123 * 60.00167 * 3 2 1 27 27 H 1.08998 * 109.46230 * 65.83172 * 5 4 2 28 28 H 1.09001 * 109.46420 * 305.84906 * 5 4 2 29 29 H 1.09000 * 109.50374 * 60.77104 * 6 5 4 30 30 H 1.09006 * 109.50187 * 180.84732 * 6 5 4 31 31 H 1.08998 * 109.52386 * 177.56505 * 7 6 5 32 32 H 1.09004 * 109.51939 * 297.75356 * 7 6 5 33 33 H 0.97003 * 119.99418 * 179.97438 * 12 11 9 34 34 H 1.08992 * 109.47424 * 54.62434 * 17 8 7 35 35 H 1.08993 * 109.47495 * 174.63133 * 17 8 7 36 36 H 1.00903 * 111.00206 * 56.04528 * 18 17 8 37 37 H 1.00898 * 110.99924 * 180.02562 * 18 17 8 38 38 H 1.09002 * 109.46699 * 54.14274 * 19 4 2 39 39 H 1.09004 * 109.46966 * 294.16958 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.4732 -2.0530 1.2815 6 6 1.8857 -2.6902 2.6104 7 6 3.4138 -2.7273 2.7005 8 6 3.9601 -1.3034 2.5636 9 6 3.4543 -0.4586 3.7045 10 1 2.7898 -0.8869 4.4402 11 6 3.8399 0.8610 3.8089 12 7 4.6088 1.3963 2.8861 13 14 3.2702 1.8883 5.2614 14 1 4.2550 1.7716 6.3667 15 1 3.1565 3.3100 4.8477 16 1 1.9464 1.3999 5.7241 17 6 5.4894 -1.3380 2.5924 18 7 5.9440 -1.7948 3.9125 19 6 3.4874 -0.7064 1.2361 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8901 26 1 1.6767 1.9563 0.8900 27 1 1.8609 -2.6505 0.4564 28 1 0.3857 -2.0119 1.2206 29 1 1.4867 -2.1008 3.4359 30 1 1.4927 -3.7054 2.6647 31 1 3.7120 -3.1408 3.6640 32 1 3.8110 -3.3486 1.8978 33 1 4.8798 2.3248 2.9594 34 1 5.8518 -2.0233 1.8262 35 1 5.8791 -0.3386 2.3997 36 1 5.5437 -2.6920 4.1424 37 1 6.9515 -1.8259 3.9571 38 1 3.8628 0.3126 1.1421 39 1 3.8657 -1.3102 0.4112 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260659376.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:04 Heat of formation + Delta-G solvation = -14.324908 kcal Electronic energy + Delta-G solvation = -17561.144456 eV Core-core repulsion = 15116.672737 eV Total energy + Delta-G solvation = -2444.471719 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.32113 -37.16514 -34.47020 -33.68376 -31.25252 -30.86923 -28.15705 -26.59963 -25.42226 -24.25544 -22.25500 -20.60462 -20.31306 -17.45804 -17.19001 -16.60586 -16.21707 -15.59568 -15.43389 -14.70968 -14.67653 -14.51923 -13.98768 -13.78919 -13.54203 -13.16158 -12.91936 -12.87447 -12.56065 -12.43394 -12.31689 -12.13189 -11.92403 -11.80853 -11.62794 -11.39156 -10.82235 -10.61810 -10.38548 -10.10211 -9.01904 -8.70438 -7.70858 -5.70645 1.49574 1.52761 1.57786 2.67706 3.29771 3.59782 4.11087 4.17371 4.23807 4.31636 4.40153 4.48751 4.56594 4.70448 4.82938 4.84578 4.87621 4.91920 4.99423 5.02429 5.07167 5.13457 5.16046 5.34028 5.38519 5.48081 5.52775 5.57997 5.63151 5.88003 5.96882 6.36906 6.48085 6.72564 6.81759 6.87322 7.04566 7.21368 7.88660 9.31424 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020953 B = 0.013853 C = 0.010740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.977354 B = 2020.716963 C = 2606.347453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.074 3.926 3 C -0.129 4.129 4 N -0.523 5.523 5 C 0.059 3.941 6 C -0.102 4.102 7 C -0.104 4.104 8 C 0.069 3.931 9 C -0.429 4.429 10 H 0.032 0.968 11 C 0.039 3.961 12 N -0.910 5.910 13 Si 0.923 3.077 14 H -0.293 1.293 15 H -0.297 1.297 16 H -0.282 1.282 17 C 0.085 3.915 18 N -0.831 5.831 19 C 0.077 3.923 20 H 0.051 0.949 21 H 0.073 0.927 22 H 0.062 0.938 23 H 0.024 0.976 24 H 0.038 0.962 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.015 0.985 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.034 0.966 33 H 0.245 0.755 34 H -0.021 1.021 35 H 0.068 0.932 36 H 0.330 0.670 37 H 0.328 0.672 38 H 0.091 0.909 39 H -0.027 1.027 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.652 -5.610 -5.400 9.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.034 4.034 3 C -0.186 4.186 4 N -0.248 5.248 5 C -0.069 4.069 6 C -0.140 4.140 7 C -0.142 4.142 8 C 0.068 3.932 9 C -0.468 4.468 10 H 0.050 0.950 11 C -0.158 4.158 12 N -0.553 5.553 13 Si 0.753 3.247 14 H -0.220 1.220 15 H -0.224 1.224 16 H -0.208 1.208 17 C -0.047 4.047 18 N -0.360 5.360 19 C -0.052 4.052 20 H 0.070 0.930 21 H 0.092 0.908 22 H 0.081 0.919 23 H 0.042 0.958 24 H 0.057 0.943 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.033 0.967 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.055 0.945 34 H -0.003 1.003 35 H 0.087 0.913 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.109 0.891 39 H -0.009 1.009 Dipole moment (debyes) X Y Z Total from point charges -5.125 -4.518 -4.746 8.319 hybrid contribution 0.816 -0.376 -0.302 0.948 sum -4.309 -4.894 -5.048 8.246 Atomic orbital electron populations 1.21829 0.93190 1.02127 1.02076 1.21628 0.96427 0.94830 0.90532 1.21700 1.00337 0.95683 1.00920 1.61797 1.08962 1.16314 1.37721 1.22103 0.99698 0.88764 0.96289 1.21433 0.95860 0.99203 0.97521 1.21597 0.96077 0.97471 0.99081 1.18244 0.90544 0.91306 0.93119 1.20579 1.24517 0.94418 1.07238 0.94953 1.24998 0.95810 0.98372 0.96591 1.69803 1.38559 1.12578 1.34377 0.86140 0.77916 0.78434 0.82180 1.21979 1.22415 1.20773 1.21653 0.98149 0.98184 0.86666 1.58467 1.11517 1.34147 1.31890 1.22094 0.86159 1.01999 0.94910 0.93027 0.90818 0.91906 0.95793 0.94287 0.91056 0.94075 0.96655 0.89984 0.92700 0.91117 0.93024 0.94748 0.94500 1.00299 0.91345 0.85718 0.86088 0.89090 1.00918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 8.85 71.98 0.64 -3.17 16 2 C 0.07 2.60 2.68 44.92 0.12 2.72 16 3 C -0.13 -4.71 8.96 71.98 0.65 -4.07 16 4 N -0.52 -21.46 4.13 -871.17 -3.60 -25.06 16 5 C 0.06 2.10 5.14 86.33 0.44 2.54 16 6 C -0.10 -3.72 5.83 30.65 0.18 -3.54 16 7 C -0.10 -4.14 4.46 30.68 0.14 -4.00 16 8 C 0.07 3.17 0.33 -52.87 -0.02 3.16 16 9 C -0.43 -22.35 6.42 25.60 0.16 -22.19 16 10 H 0.03 1.76 6.81 -2.91 -0.02 1.74 16 11 C 0.04 2.08 5.15 84.65 0.44 2.52 16 12 N -0.91 -50.07 9.43 21.45 0.20 -49.87 16 13 Si 0.92 45.55 29.54 68.60 2.03 47.57 16 14 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 15 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 16 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 17 C 0.09 3.89 5.44 86.30 0.47 4.36 16 18 N -0.83 -34.26 9.04 -186.73 -1.69 -35.95 16 19 C 0.08 3.53 3.74 86.33 0.32 3.85 16 20 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 21 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.06 1.61 6.22 -2.38 -0.01 1.59 16 23 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.04 1.60 6.27 -2.39 -0.01 1.59 16 25 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.08 2.55 5.91 -2.39 -0.01 2.54 16 29 H 0.05 2.25 6.80 -2.39 -0.02 2.23 16 30 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.05 2.00 6.81 -2.39 -0.02 1.98 16 32 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.25 13.45 8.31 -92.71 -0.77 12.67 16 34 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 35 H 0.07 3.58 6.22 -2.39 -0.01 3.57 16 36 H 0.33 12.35 7.32 -89.69 -0.66 11.70 16 37 H 0.33 11.81 9.08 -89.70 -0.81 11.00 16 38 H 0.09 4.67 3.94 -2.39 -0.01 4.67 16 39 H -0.03 -1.24 8.14 -2.38 -0.02 -1.26 16 Total: -1.00 -57.51 285.57 0.04 -57.47 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.44 Total: 23.67 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: 3.54 Total: -17.83 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -5.09 Total: -110.88 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -57.51 0.04 -57.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260659376.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.142 kcal (2) G-P(sol) polarization free energy of solvation -57.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds