Wall clock time and date at job start Mon Mar 30 2020 02:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47281 * 2 1 4 4 H 1.08997 * 109.52106 * 54.87290 * 3 2 1 5 5 C 1.53117 * 109.52283 * 294.68413 * 3 2 1 6 6 C 1.53036 * 109.28075 * 182.43611 * 5 3 2 7 7 N 1.46856 * 109.51915 * 59.18018 * 6 5 3 8 8 C 1.46907 * 110.99639 * 174.16190 * 7 6 5 9 9 C 1.50698 * 109.46935 * 293.22600 * 8 7 6 10 10 H 1.07996 * 120.00199 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99920 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99997 * 179.72736 * 11 9 8 13 13 Si 1.86795 * 119.99623 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47488 * 89.99891 * 13 11 9 15 15 H 1.48502 * 109.46922 * 209.99810 * 13 11 9 16 16 H 1.48499 * 109.47312 * 329.99833 * 13 11 9 17 17 C 1.46844 * 111.19673 * 298.25949 * 7 6 5 18 18 H 1.09000 * 109.46267 * 301.72260 * 17 7 6 19 19 C 1.53005 * 109.45949 * 181.74926 * 17 7 6 20 20 N 1.46899 * 109.47105 * 305.80199 * 19 17 7 21 21 C 1.53031 * 109.52341 * 61.74215 * 17 7 6 22 22 H 1.08997 * 109.47176 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47128 * 300.00135 * 1 2 3 24 24 H 1.08997 * 109.47176 * 59.99933 * 1 2 3 25 25 H 1.09005 * 109.46826 * 240.00009 * 2 1 3 26 26 H 1.08997 * 109.47176 * 120.00067 * 2 1 3 27 27 H 1.08999 * 109.50773 * 302.38418 * 5 3 2 28 28 H 1.09006 * 109.50181 * 62.46099 * 5 3 2 29 29 H 1.08995 * 109.46515 * 299.16838 * 6 5 3 30 30 H 1.08999 * 109.46617 * 179.19225 * 6 5 3 31 31 H 1.09004 * 109.46592 * 173.23248 * 8 7 6 32 32 H 1.08992 * 109.47145 * 53.22676 * 8 7 6 33 33 H 0.97000 * 119.99635 * 180.02562 * 12 11 9 34 34 H 1.08996 * 109.47385 * 65.80677 * 19 17 7 35 35 H 1.09001 * 109.46964 * 185.80255 * 19 17 7 36 36 H 1.00910 * 110.99900 * 56.05024 * 20 19 17 37 37 H 1.00899 * 111.00308 * 180.02562 * 20 19 17 38 38 H 1.08999 * 109.50402 * 60.76627 * 21 17 7 39 39 H 1.09005 * 109.50315 * 180.84035 * 21 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6041 1.9829 0.8402 5 6 1.6424 2.1258 -1.3113 6 6 2.2071 3.5480 -1.3314 7 7 3.6697 3.4970 -1.2091 8 6 4.2578 4.8343 -1.3635 9 6 4.0482 5.3151 -2.7762 10 1 3.5296 4.6901 -3.4881 11 6 4.5185 6.5531 -3.1601 12 7 4.3403 6.9705 -4.3944 13 14 5.4160 7.6339 -1.9290 14 1 6.8709 7.3407 -1.9810 15 1 5.1866 9.0622 -2.2646 16 1 4.9042 7.3582 -0.5625 17 6 4.0750 2.8876 0.0639 18 1 3.6517 3.4579 0.8907 19 6 5.6014 2.8941 0.1690 20 7 6.1767 2.2462 -1.0174 21 6 3.5660 1.4457 0.1257 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.0458 1.5621 -2.1524 28 1 0.5556 2.1641 -1.3867 29 1 1.7926 4.1153 -0.4981 30 1 1.9379 4.0325 -2.2700 31 1 5.3257 4.7884 -1.1500 32 1 3.7778 5.5246 -0.6698 33 1 4.6715 7.8413 -4.6645 34 1 5.9571 3.9226 0.2297 35 1 5.9064 2.3508 1.0634 36 1 5.8566 2.6924 -1.8640 37 1 7.1846 2.2375 -0.9717 38 1 3.9998 0.8712 -0.6927 39 1 3.8542 0.9984 1.0771 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300022366.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:28 Heat of formation + Delta-G solvation = -14.836619 kcal Electronic energy + Delta-G solvation = -16768.701688 eV Core-core repulsion = 14324.207779 eV Total energy + Delta-G solvation = -2444.493909 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.08445 -35.55217 -33.66613 -32.43978 -30.62048 -29.69159 -27.37976 -25.06024 -23.64999 -22.12309 -21.16858 -19.64515 -18.86334 -16.81212 -15.69927 -15.18943 -14.68290 -14.59700 -14.24498 -13.68991 -13.46581 -13.11697 -12.95576 -12.79097 -12.49328 -11.98771 -11.82376 -11.51153 -11.21352 -11.14750 -10.91994 -10.70276 -10.55800 -10.48443 -10.20102 -9.90616 -9.76869 -9.53057 -9.21472 -8.59252 -8.08020 -7.29325 -6.07900 -4.04729 3.23328 3.32035 3.33884 4.38382 4.71775 4.95376 5.06385 5.13993 5.20607 5.25341 5.50891 5.53082 5.60560 5.74915 5.80818 5.88752 5.95012 5.99313 6.07673 6.08564 6.16434 6.22748 6.32997 6.41600 6.48074 6.53112 6.69185 6.73691 6.85171 6.94744 7.03412 7.57110 7.69276 7.96707 8.08981 8.13074 8.65902 9.02363 9.54395 11.05148 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032697 B = 0.007926 C = 0.006948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.130975 B = 3531.772835 C = 4028.963752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.090 4.090 4 H 0.058 0.942 5 C -0.110 4.110 6 C 0.066 3.934 7 N -0.516 5.516 8 C 0.156 3.844 9 C -0.507 4.507 10 H 0.082 0.918 11 C 0.069 3.931 12 N -0.899 5.899 13 Si 0.871 3.129 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.269 1.269 17 C 0.083 3.917 18 H 0.026 0.974 19 C 0.069 3.931 20 N -0.842 5.842 21 C -0.094 4.094 22 H 0.048 0.952 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.015 0.985 30 H 0.087 0.913 31 H 0.024 0.976 32 H -0.016 1.016 33 H 0.263 0.737 34 H 0.024 0.976 35 H 0.061 0.939 36 H 0.363 0.637 37 H 0.326 0.674 38 H 0.082 0.918 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.730 -10.423 9.880 14.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.109 4.109 4 H 0.076 0.924 5 C -0.147 4.147 6 C -0.062 4.062 7 N -0.241 5.241 8 C 0.030 3.970 9 C -0.545 4.545 10 H 0.100 0.900 11 C -0.133 4.133 12 N -0.538 5.538 13 Si 0.699 3.301 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.194 1.194 17 C -0.027 4.027 18 H 0.044 0.956 19 C -0.062 4.062 20 N -0.374 5.374 21 C -0.131 4.131 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.105 0.895 31 H 0.042 0.958 32 H 0.002 0.998 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.180 0.820 37 H 0.137 0.863 38 H 0.101 0.899 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.919 -11.198 9.620 15.049 hybrid contribution 0.672 2.305 1.137 2.657 sum -2.247 -8.893 10.757 14.137 Atomic orbital electron populations 1.21813 0.96383 1.00946 1.01847 1.21534 0.95393 0.96826 1.01594 1.21262 0.96226 0.95270 0.98119 0.92374 1.21688 0.99141 0.96602 0.97304 1.21952 0.87814 0.95133 1.01339 1.61816 1.08577 1.23495 1.30253 1.20255 0.94333 0.84747 0.97670 1.21048 1.37094 1.01782 0.94613 0.89986 1.24893 0.95870 0.97561 0.94928 1.69891 1.46949 1.20152 1.16808 0.86922 0.80532 0.80329 0.82330 1.20295 1.21158 1.19432 1.21634 0.94129 0.95403 0.91497 0.95610 1.21776 0.94395 0.96236 0.93810 1.58729 1.11541 1.61257 1.05847 1.21520 0.93916 0.96132 1.01580 0.93335 0.93161 0.92369 0.91950 0.92622 0.91277 0.92418 0.96648 0.89465 0.95791 0.99789 0.92690 0.95794 0.92026 0.82035 0.86332 0.89947 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.67 37.16 0.36 -1.26 16 2 C -0.12 -1.37 5.41 -26.73 -0.14 -1.51 16 3 C -0.09 -1.26 2.25 -90.50 -0.20 -1.47 16 4 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 5 C -0.11 -1.72 5.08 -26.65 -0.14 -1.85 16 6 C 0.07 1.27 5.30 -3.83 -0.02 1.25 16 7 N -0.52 -10.53 3.64 -228.12 -0.83 -11.36 16 8 C 0.16 3.72 3.14 -4.97 -0.02 3.70 16 9 C -0.51 -14.08 8.99 -34.44 -0.31 -14.39 16 10 H 0.08 2.49 7.43 -52.49 -0.39 2.10 16 11 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 12 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 13 Si 0.87 21.39 27.47 -169.99 -4.67 16.73 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.27 -6.46 6.54 56.52 0.37 -6.10 16 17 C 0.08 1.44 2.21 -67.72 -0.15 1.29 16 18 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 19 C 0.07 1.14 5.77 -3.82 -0.02 1.12 16 20 N -0.84 -13.86 9.09 -10.37 -0.09 -13.96 16 21 C -0.09 -1.41 4.56 -26.66 -0.12 -1.53 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.63 6.63 -51.93 -0.34 0.29 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.06 0.81 6.70 -51.93 -0.35 0.47 16 29 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 1.89 6.77 -51.93 -0.35 1.54 16 31 H 0.02 0.57 4.91 -51.93 -0.26 0.31 16 32 H -0.02 -0.39 7.17 -51.93 -0.37 -0.76 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.02 0.43 6.44 -51.93 -0.33 0.09 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.36 6.95 7.52 -39.29 -0.30 6.65 16 37 H 0.33 4.65 9.08 -39.29 -0.36 4.29 16 38 H 0.08 1.36 7.76 -51.93 -0.40 0.95 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 292.92 15.07 4.41 4.41 Total: -1.00 -28.75 292.92 -8.11 -36.86 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.85 Total: 6.56 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -0.86 Total: -12.77 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.15 Total: -51.79 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.75 -8.11 -36.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300022366.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.025 kcal (2) G-P(sol) polarization free energy of solvation -28.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds