Wall clock time and date at job start Mon Mar 30 2020 02:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47281 * 2 1 4 4 H 1.08997 * 109.52106 * 54.87290 * 3 2 1 5 5 C 1.53117 * 109.52283 * 294.68413 * 3 2 1 6 6 C 1.53036 * 109.28075 * 182.43611 * 5 3 2 7 7 N 1.46856 * 109.51915 * 59.18018 * 6 5 3 8 8 C 1.46907 * 110.99639 * 174.16190 * 7 6 5 9 9 C 1.50698 * 109.46935 * 293.22600 * 8 7 6 10 10 H 1.07996 * 120.00199 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99920 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99997 * 179.72736 * 11 9 8 13 13 Si 1.86795 * 119.99623 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47488 * 89.99891 * 13 11 9 15 15 H 1.48502 * 109.46922 * 209.99810 * 13 11 9 16 16 H 1.48499 * 109.47312 * 329.99833 * 13 11 9 17 17 C 1.46844 * 111.19673 * 298.25949 * 7 6 5 18 18 H 1.09000 * 109.46267 * 301.72260 * 17 7 6 19 19 C 1.53005 * 109.45949 * 181.74926 * 17 7 6 20 20 N 1.46899 * 109.47105 * 305.80199 * 19 17 7 21 21 C 1.53031 * 109.52341 * 61.74215 * 17 7 6 22 22 H 1.08997 * 109.47176 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47128 * 300.00135 * 1 2 3 24 24 H 1.08997 * 109.47176 * 59.99933 * 1 2 3 25 25 H 1.09005 * 109.46826 * 240.00009 * 2 1 3 26 26 H 1.08997 * 109.47176 * 120.00067 * 2 1 3 27 27 H 1.08999 * 109.50773 * 302.38418 * 5 3 2 28 28 H 1.09006 * 109.50181 * 62.46099 * 5 3 2 29 29 H 1.08995 * 109.46515 * 299.16838 * 6 5 3 30 30 H 1.08999 * 109.46617 * 179.19225 * 6 5 3 31 31 H 1.09004 * 109.46592 * 173.23248 * 8 7 6 32 32 H 1.08992 * 109.47145 * 53.22676 * 8 7 6 33 33 H 0.97000 * 119.99635 * 180.02562 * 12 11 9 34 34 H 1.08996 * 109.47385 * 65.80677 * 19 17 7 35 35 H 1.09001 * 109.46964 * 185.80255 * 19 17 7 36 36 H 1.00910 * 110.99900 * 56.05024 * 20 19 17 37 37 H 1.00899 * 111.00308 * 180.02562 * 20 19 17 38 38 H 1.08999 * 109.50402 * 60.76627 * 21 17 7 39 39 H 1.09005 * 109.50315 * 180.84035 * 21 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6041 1.9829 0.8402 5 6 1.6424 2.1258 -1.3113 6 6 2.2071 3.5480 -1.3314 7 7 3.6697 3.4970 -1.2091 8 6 4.2578 4.8343 -1.3635 9 6 4.0482 5.3151 -2.7762 10 1 3.5296 4.6901 -3.4881 11 6 4.5185 6.5531 -3.1601 12 7 4.3403 6.9705 -4.3944 13 14 5.4160 7.6339 -1.9290 14 1 6.8709 7.3407 -1.9810 15 1 5.1866 9.0622 -2.2646 16 1 4.9042 7.3582 -0.5625 17 6 4.0750 2.8876 0.0639 18 1 3.6517 3.4579 0.8907 19 6 5.6014 2.8941 0.1690 20 7 6.1767 2.2462 -1.0174 21 6 3.5660 1.4457 0.1257 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.0458 1.5621 -2.1524 28 1 0.5556 2.1641 -1.3867 29 1 1.7926 4.1153 -0.4981 30 1 1.9379 4.0325 -2.2700 31 1 5.3257 4.7884 -1.1500 32 1 3.7778 5.5246 -0.6698 33 1 4.6715 7.8413 -4.6645 34 1 5.9571 3.9226 0.2297 35 1 5.9064 2.3508 1.0634 36 1 5.8566 2.6924 -1.8640 37 1 7.1846 2.2375 -0.9717 38 1 3.9998 0.8712 -0.6927 39 1 3.8542 0.9984 1.0771 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300022366.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:28 Heat of formation + Delta-G solvation = -34.856875 kcal Electronic energy + Delta-G solvation = -16769.569831 eV Core-core repulsion = 14324.207779 eV Total energy + Delta-G solvation = -2445.362052 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.49853 -36.82130 -35.29389 -34.31923 -31.98908 -31.07081 -29.10384 -26.47576 -25.05721 -23.38834 -22.92442 -20.82504 -20.31714 -18.92863 -17.09670 -16.79620 -16.32948 -15.81063 -15.66462 -15.25354 -14.77776 -14.56623 -14.49205 -14.23297 -13.99787 -13.44456 -13.28004 -12.87674 -12.65790 -12.46019 -12.40409 -12.22048 -11.93956 -11.86910 -11.78932 -11.54818 -11.32933 -10.93102 -10.84683 -10.75832 -9.41243 -8.95078 -8.29718 -6.31803 1.28843 1.31197 1.41031 2.30431 3.02620 3.18394 3.80136 3.86807 3.94173 3.99946 4.31577 4.39848 4.43427 4.50233 4.52978 4.66922 4.72331 4.73270 4.78896 4.90954 4.94984 4.99405 5.10001 5.14933 5.18609 5.27471 5.30244 5.37564 5.45889 5.50216 5.57297 5.71698 6.04918 6.31645 6.44730 6.72610 6.73765 6.76431 7.31551 8.86815 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032697 B = 0.007926 C = 0.006948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.130975 B = 3531.772835 C = 4028.963752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.085 4.085 4 H 0.063 0.937 5 C -0.100 4.100 6 C 0.066 3.934 7 N -0.524 5.524 8 C 0.170 3.830 9 C -0.509 4.509 10 H 0.040 0.960 11 C 0.011 3.989 12 N -0.946 5.946 13 Si 0.941 3.059 14 H -0.264 1.264 15 H -0.282 1.282 16 H -0.258 1.258 17 C 0.078 3.922 18 H 0.027 0.973 19 C 0.070 3.930 20 N -0.841 5.841 21 C -0.085 4.085 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.015 0.985 30 H 0.050 0.950 31 H 0.032 0.968 32 H -0.026 1.026 33 H 0.266 0.734 34 H 0.010 0.990 35 H 0.091 0.909 36 H 0.347 0.653 37 H 0.340 0.660 38 H 0.069 0.931 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.323 -11.547 12.416 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.104 4.104 4 H 0.081 0.919 5 C -0.138 4.138 6 C -0.063 4.063 7 N -0.249 5.249 8 C 0.043 3.957 9 C -0.548 4.548 10 H 0.058 0.942 11 C -0.186 4.186 12 N -0.586 5.586 13 Si 0.765 3.235 14 H -0.189 1.189 15 H -0.208 1.208 16 H -0.183 1.183 17 C -0.031 4.031 18 H 0.044 0.956 19 C -0.062 4.062 20 N -0.371 5.371 21 C -0.123 4.123 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.050 0.950 32 H -0.009 1.009 33 H 0.075 0.925 34 H 0.028 0.972 35 H 0.109 0.891 36 H 0.161 0.839 37 H 0.152 0.848 38 H 0.087 0.913 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.506 -12.354 12.178 17.528 hybrid contribution 0.499 2.595 0.295 2.659 sum -2.007 -9.759 12.473 15.963 Atomic orbital electron populations 1.21805 0.95432 1.01913 1.01758 1.21477 0.96185 0.94954 1.02150 1.21233 0.95627 0.96751 0.96772 0.91889 1.21611 0.99878 0.93995 0.98284 1.21926 0.87587 0.97423 0.99325 1.61759 1.09006 1.21450 1.32701 1.19978 0.94843 0.86325 0.94575 1.21233 1.36111 1.01447 0.95967 0.94182 1.25766 0.96874 0.99145 0.96845 1.70043 1.48599 1.20911 1.19090 0.85806 0.79622 0.78112 0.79932 1.18897 1.20753 1.18268 1.21818 0.95094 0.96585 0.89624 0.95561 1.21834 0.93607 0.95935 0.94799 1.58723 1.12647 1.60727 1.05039 1.21468 0.94451 0.94098 1.02308 0.91910 0.92667 0.93051 0.92350 0.91108 0.92442 0.90754 0.96687 0.93142 0.94985 1.00874 0.92496 0.97227 0.89119 0.83945 0.84840 0.91264 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.67 71.98 0.70 -2.08 16 2 C -0.11 -2.27 5.41 30.59 0.17 -2.10 16 3 C -0.09 -2.18 2.25 -10.72 -0.02 -2.21 16 4 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 5 C -0.10 -3.07 5.08 30.65 0.16 -2.91 16 6 C 0.07 2.58 5.30 86.32 0.46 3.04 16 7 N -0.52 -21.46 3.64 -875.64 -3.19 -24.65 16 8 C 0.17 8.13 3.14 85.56 0.27 8.40 16 9 C -0.51 -29.29 8.99 25.60 0.23 -29.06 16 10 H 0.04 2.58 7.43 -2.91 -0.02 2.56 16 11 C 0.01 0.65 5.47 84.66 0.46 1.11 16 12 N -0.95 -59.03 13.96 21.45 0.30 -58.73 16 13 Si 0.94 44.27 27.47 68.60 1.88 46.16 16 14 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 16 H -0.26 -11.61 6.54 99.48 0.65 -10.96 16 17 C 0.08 2.57 2.21 44.94 0.10 2.67 16 18 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 19 C 0.07 2.14 5.77 86.30 0.50 2.64 16 20 N -0.84 -26.40 9.09 -186.72 -1.70 -28.10 16 21 C -0.09 -2.36 4.56 30.64 0.14 -2.22 16 22 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.05 1.00 6.63 -2.39 -0.02 0.99 16 25 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.07 2.02 6.70 -2.38 -0.02 2.01 16 29 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 2.32 6.77 -2.39 -0.02 2.30 16 31 H 0.03 1.50 4.91 -2.38 -0.01 1.48 16 32 H -0.03 -1.31 7.17 -2.39 -0.02 -1.33 16 33 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 34 H 0.01 0.32 6.44 -2.39 -0.02 0.31 16 35 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.35 13.14 7.52 -89.69 -0.67 12.46 16 37 H 0.34 9.04 9.08 -89.69 -0.81 8.23 16 38 H 0.07 2.13 7.76 -2.39 -0.02 2.11 16 39 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -63.21 292.92 -0.07 -63.29 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: -0.52 Total: 24.76 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 3.15 Total: -22.73 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -4.59 Total: -111.48 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.16 kcal Total: -63.21 -0.07 -63.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300022366.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.430 kcal (2) G-P(sol) polarization free energy of solvation -63.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds